CHR211 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHR211
Library	CH (Link to library)
Clone ID	CHR211 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16366-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHR2-A/CHR211Q.Seq.d/
Representative seq. ID	CHR211P (Link to Original site)
Representative DNA sequence	>CHR211 (CHR211Q) /CSM/CH/CHR2-A/CHR211Q.Seq.d/ AATTTCGAAAACAAGTTTTGGAAAAAACATATATTTATAGATATTAAAAAATTCTAAAAA ATGTTTAACCCAGTATTTGGATCGAATCAACCAAATAATGTAGGAATACAACCTCAAACT CCACAACATCAAACATCACAATCTCAAACTCCACTTAGAAAAATTTTAACAAGCCCAATG TCATCGTCAGATCAATTACCCCCTGTTGAAACTTTAAATCCCGATGCTTTAAAGGATTTA ACTAAATTACAATTACAAGCATATTTAAAAGCACATCAAATTGTACCAGCAGTATCAAAA CCTGAAATGAAAAAACAAATGAGAACACTTATTCATGCAATTTCAAATAAAGATTCATTA CCACCAAATGCAAATAATGTACCGCCAGGTGTTTATCCACAATCTATACAACCAGTTGGT GCACCAACTATGTTAATGCATCAAGTTGGAGGAAATGTACCACCACAATCACCCTATGGA TATCCACAACCACCACAACAATTCCCAGGTGGTGGTACAATAGCACCAGTTCACCAACAA ATACAACAACAATTACATATTCAACAACAGCAACAGCAACAACAACAGCAACAACAACAA CAACTTCAACAACTTCAATTACAACAACAATTAATAGCACAACAACAAGCACAACAACAA GCATTAGCACAACAACAATACGCAGCACAACAAGCAGCATTGGCACAACAACAATATGCA GCACAACAAGCAGCATTAGCTCAACAAGCAGCATTGGCACAXXXXXXXXXXCAAGAGAAT CAACTTCTGCATTACTTTTTAATTCTGATAGNATATATAATAATCCAAAACAAAAAACNA CAGAAAGATTTNATTTAACTATTGAATGGTTAGAAGAATTATTTTCNCCAATTCCNCCNC CAGAAGTTACAGATAAAAAGTTTTTTAATGAAAGAAAAGCAATGTTATTAGAATTTGAAT CAAAGNTAAGTTNTTTAATTGATTNTTTTGATGAAAATATAGATCCAGTCNCTTCAAAAT ATTCAGTTTTANAGAATTTATTAAAAGAATTTGATACTTTCCATAAATATTATGATAGTT TATCAACTTNTCAAAATAATGAAGAATTAAAAAATATNATTCNACAATATGAAAATGAAA AAAATGNACNTTTTGAACAAAGACCTTTAGTAATTACTCCATATCATCCTTCAACAGTTT TTTCAAATGGCAAAGTTCCAGCATTTGAATTTATTGAGAGTGATACCNCCTTTTCNCTTT GTTNTTTATAAAAAAAATAAAATAAAATAAAAATAAACAAAAAAAAAAGATAAAATAAAA CAAAGTATAATAATACTAATAGTAATAATATAATAATAATAANATAAAAACTAATTATTA TTATTTATATTTTATCAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	nfenkfwkkhifidikkfKMFNPVFGSNQPNNVGIQPQTPQHQTSQSQTPLRKILTSPM SSSDQLPPVETLNPDALKDLTKLQLQAYLKAHQIVPAVSKPEMKKQMRTLIHAISNKDSL PPNANNVPPGVYPQSIQPVGAPTMLMHQVGGNVPPQSPYGYPQPPQQFPGGGTIAPVHQQ IQQQLHIQQQQQQQQQQQQQQLQQLQLQQQLIAQQQAQQQALAQQQYAAQQAALAQQQYA AQQAALAQQAALA--- ---RESTSALLFNSDXIYNNPKQKTTERFXLTIEWLEELFSPIPPPEVTDKKFFNERKAM LLEFESKXSXLIDXFDENIDPVXSKYSVLXNLLKEFDTFHKYYDSLSTXQNNEELKNXIX QYENEKNXXFEQRPLVITPYHPSTVFSNGKVPAFEFIESDTXFSLCXLkknkikinkk krnktkynntnsnniiiix*kliiiiyilsk
Translated Amino Acid sequence (All Frames)	Frame A: nfenkfwkkhifidikkfKMFNPVFGSNQPNNVGIQPQTPQHQTSQSQTPLRKILTSPM SSSDQLPPVETLNPDALKDLTKLQLQAYLKAHQIVPAVSKPEMKKQMRTLIHAISNKDSL PPNANNVPPGVYPQSIQPVGAPTMLMHQVGGNVPPQSPYGYPQPPQQFPGGGTIAPVHQQ IQQQLHIQQQQQQQQQQQQQQLQQLQLQQQLIAQQQAQQQALAQQQYAAQQAALAQQQYA AQQAALAQQAALA--- ---qenqllhyflilixyiiiqnkkxqkdxillngknyfxqfxxqklqiksflmkekq cynlnqxvxlixlmkiiqslqniqfxriyknlilsinimivyqlxkimknkixf xnmkmkkmxxlnkdlllhiilqqffqmakfqhlnllrvippfxfvxykknkikktk kkdkikqsiiilivii**xknlllfifyq Frame B: isktsfgkniylilknskkcltqyldrinqimeynlklhnikhhnlklhlekfqaqc hrqinypllklipmlrilnynykhikhiklyqqyqnlkknkehlfmqfqikihy hqmqimyrqvfihnlynqlvhqlccikleemyhhnhpmdihnhhnnsqvvvqhqftnk ynnnyifnnsnsnnnsnnnnnfnnfnynnnhnnkhnnkhhnnntqhnkqhwhnnnmq hnkqhlnkqhwh--- ---krinfcitffxisktknxrkixfnymvrriifxnsxxrsyrkvf*kksn viriikxkxfnxfkyrssxfkifsfxefikriyfpilfinxskrikkyxs tikkkxtftktfsnysissfnsffkwqsssiiyeyxlfxlxfikkiknknkqk kkiknkvy**ynnnxiktnyyylyfik Frame C: frkqvlektyiyrykilknvpsiwiestkcrnttsnsttsnitisnstknfnkpnv ivrsitpcnfksrcfkgfnititsifkstsnctssiktnektnentyscnfkrfit tkckctarclstiyttswctnyvnasswrkctttitlwistttttiprwwynstssptn tttitysttatatttatttttsttsitttinstttstttsistttirsttssigtttics ttssisstssigt--- ---RESTSALLFNSDXIYNNPKQKTTERFXLTIEWLEELFSPIPPPEVTDKKFFNERKAM LLEFESKXSXLIDXFDENIDPVXSKYSVLXNLLKEFDTFHKYYDSLSTXQNNEELKNXIX QYENEKNXXFEQRPLVITPYHPSTVFSNGKVPAFEFIESDTXFSLCXLkknkikinkk krnktkynntnsnniiiixkliiiiyilsk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHO235 (VHO235Q) /CSM/VH/VHO2-B/VHO235Q.Seq.d/ 952 0.0 VHB487 (VHB487Q) /CSM/VH/VHB4-D/VHB487Q.Seq.d/ 952 0.0 SHE560 (SHE560Q) /CSM/SH/SHE5-C/SHE560Q.Seq.d/ 952 0.0 SFJ878 (SFJ878Q) /CSM/SF/SFJ8-D/SFJ878Q.Seq.d/ 952 0.0 CHR733 (CHR733Q) /CSM/CH/CHR7-B/CHR733Q.Seq.d/ 952 0.0 CHR211 (CHR211Q) /CSM/CH/CHR2-A/CHR211Q.Seq.d/ 952 0.0 CHQ762 (CHQ762Q) /CSM/CH/CHQ7-C/CHQ762Q.Seq.d/ 952 0.0 CHQ723 (CHQ723Q) /CSM/CH/CHQ7-A/CHQ723Q.Seq.d/ 952 0.0 CHM660 (CHM660Q) /CSM/CH/CHM6-C/CHM660Q.Seq.d/ 952 0.0 CHL151 (CHL151Q) /CSM/CH/CHL1-C/CHL151Q.Seq.d/ 952 0.0
own update	2002.11.28
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116330\|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 523 0.0 8 AC114261\|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence. 34 0.12 6 CR046111\|CR046111.1 Forward strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN350f07. 50 0.13 1 BX965467\|BX965467.1 Forward strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN315c20. 50 0.13 1 AL606926\|AL606926.6 Mouse DNA sequence from clone RP23-231M4 on chromosome 4. 50 0.13 1 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 36 0.28 9 AC004688\|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS , 4 unordered pieces. 36 0.47 10 CR456630\|CR456630.3 Zebrafish DNA sequence SEQUENCING IN PROGRESS * from clone. 48 0.50 1 CR792441\|CR792441.3 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone DKEY-229D11. 48 0.50 1 BX890634\|BX890634.2 Zebrafish DNA sequence * SEQUENCING IN PROGRESS * from clone. 48 0.50 1
dna update	2005.11.13
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116330_24(AC116330\|pid:none) Dictyostelium discoideum chromoso... 294 4e-78 CP000792_1402(CP000792\|pid:none) Campylobacter concisus 13826, c... 36 2.8
protein update	2008.11. 8
PSORT	psg: 0.86 gvh: 0.44 alm: 0.51 top: 0.57 tms: 0.00 mit: 0.45 mip: 0.07 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 60.0 %: mitochondrial 20.0 %: nuclear 12.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for CHR211 is mit
5' end seq. ID	CHR211F
5' end seq.	>CHR211F.Seq AATTTCGAAAACAAGTTTTGGAAAAAACATATATTTATAGATATTAAAAAATTCTAAAAA ATGTTTAACCCAGTATTTGGATCGAATCAACCAAATAATGTAGGAATACAACCTCAAACT CCACAACATCAAACATCACAATCTCAAACTCCACTTAGAAAAATTTTAACAAGCCCAATG TCATCGTCAGATCAATTACCCCCTGTTGAAACTTTAAATCCCGATGCTTTAAAGGATTTA ACTAAATTACAATTACAAGCATATTTAAAAGCACATCAAATTGTACCAGCAGTATCAAAA CCTGAAATGAAAAAACAAATGAGAACACTTATTCATGCAATTTCAAATAAAGATTCATTA CCACCAAATGCAAATAATGTACCGCCAGGTGTTTATCCACAATCTATACAACCAGTTGGT GCACCAACTATGTTAATGCATCAAGTTGGAGGAAATGTACCACCACAATCACCCTATGGA TATCCACAACCACCACAACAATTCCCAGGTGGTGGTACAATAGCACCAGTTCACCAACAA ATACAACAACAATTACATATTCAACAACAGCAACAGCAACAACAACAGCAACAACAACAA CAACTTCAACAACTTCAATTACAACAACAATTAATAGCACAACAACAAGCACAACAACAA GCATTAGCACAACAACAATACGCAGCACAACAAGCAGCATTGGCACAACAACAATATGCA GCACAACAAGCAGCATTAGCTCAACAAGCAGCATTGGCACANNNNNNNNNN
Length of 5' end seq.	771
3' end seq. ID	CHR211Z
3' end seq.	>CHR211Z.Seq NNNNNNNNNNCAAGAGAATCAACTTCTGCATTACTTTTTAATTCTGATAGNATATATAAT AATCCAAAACAAAAAACNACAGAAAGATTTNATTTAACTATTGAATGGTTAGAAGAATTA TTTTCNCCAATTCCNCCNCCAGAAGTTACAGATAAAAAGTTTTTTAATGAAAGAAAAGCA ATGTTATTAGAATTTGAATCAAAGNTAAGTTNTTTAATTGATTNTTTTGATGAAAATATA GATCCAGTCNCTTCAAAATATTCAGTTTTANAGAATTTATTAAAAGAATTTGATACTTTC CATAAATATTATGATAGTTTATCAACTTNTCAAAATAATGAAGAATTAAAAAATATNATT CNACAATATGAAAATGAAAAAAATGNACNTTTTGAACAAAGACCTTTAGTAATTACTCCA TATCATCCTTCAACAGTTTTTTCAAATGGCAAAGTTCCAGCATTTGAATTTATTGAGAGT GATACCNCCTTTTCNCTTTGTTNTTTATAAAAAAAATAAAATAAAATAAAAATAAACAAA AAAAAAAGATAAAATAAAACAAAGTATAATAATACTAATAGTAATAATATAATAATAATA ANATAAAAACTAATTATTATTATTTATATTTTATCAAAA
Length of 3' end seq.	639
Connected seq. ID	CHR211P
Connected seq.	>CHR211P.Seq AATTTCGAAAACAAGTTTTGGAAAAAACATATATTTATAGATATTAAAAAATTCTAAAAA ATGTTTAACCCAGTATTTGGATCGAATCAACCAAATAATGTAGGAATACAACCTCAAACT CCACAACATCAAACATCACAATCTCAAACTCCACTTAGAAAAATTTTAACAAGCCCAATG TCATCGTCAGATCAATTACCCCCTGTTGAAACTTTAAATCCCGATGCTTTAAAGGATTTA ACTAAATTACAATTACAAGCATATTTAAAAGCACATCAAATTGTACCAGCAGTATCAAAA CCTGAAATGAAAAAACAAATGAGAACACTTATTCATGCAATTTCAAATAAAGATTCATTA CCACCAAATGCAAATAATGTACCGCCAGGTGTTTATCCACAATCTATACAACCAGTTGGT GCACCAACTATGTTAATGCATCAAGTTGGAGGAAATGTACCACCACAATCACCCTATGGA TATCCACAACCACCACAACAATTCCCAGGTGGTGGTACAATAGCACCAGTTCACCAACAA ATACAACAACAATTACATATTCAACAACAGCAACAGCAACAACAACAGCAACAACAACAA CAACTTCAACAACTTCAATTACAACAACAATTAATAGCACAACAACAAGCACAACAACAA GCATTAGCACAACAACAATACGCAGCACAACAAGCAGCATTGGCACAACAACAATATGCA GCACAACAAGCAGCATTAGCTCAACAAGCAGCATTGGCACA----------CAAGAGAAT CAACTTCTGCATTACTTTTTAATTCTGATAGNATATATAATAATCCAAAACAAAAAACNA CAGAAAGATTTNATTTAACTATTGAATGGTTAGAAGAATTATTTTCNCCAATTCCNCCNC CAGAAGTTACAGATAAAAAGTTTTTTAATGAAAGAAAAGCAATGTTATTAGAATTTGAAT CAAAGNTAAGTTNTTTAATTGATTNTTTTGATGAAAATATAGATCCAGTCNCTTCAAAAT ATTCAGTTTTANAGAATTTATTAAAAGAATTTGATACTTTCCATAAATATTATGATAGTT TATCAACTTNTCAAAATAATGAAGAATTAAAAAATATNATTCNACAATATGAAAATGAAA AAAATGNACNTTTTGAACAAAGACCTTTAGTAATTACTCCATATCATCCTTCAACAGTTT TTTCAAATGGCAAAGTTCCAGCATTTGAATTTATTGAGAGTGATACCNCCTTTTCNCTTT GTTNTTTATAAAAAAAATAAAATAAAATAAAAATAAACAAAAAAAAAAGATAAAATAAAA CAAAGTATAATAATACTAATAGTAATAATATAATAATAATAANATAAAAACTAATTATTA TTATTTATATTTTATCAAAA
Length of connected seq.	1390
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas