>CHR209 (CHR209Q) /CSM/CH/CHR2-A/CHR209Q.Seq.d/
TTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAATCCAT
GTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCATC
CAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACGTACTT
TTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGATG
ATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAATT
TCCTTTATGTACTCTTACAAAAGGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTAA
CAAGTCAACATGAAGATCCACATGGTATTCTAAATGAAACCAGTTCAAAGATTGAATCCT
CAACAAAGGAAGTCATTGAAGCAGAGGTTCAATGGTTTATTGAATATTTCCTATTGAATT
CATGGTTTGGTGTTGGTCAAGAGATTCCAAGAGATGCCGATGATGCTGAACGTGCTTTAA
TCGCTAAACTTCGTGATGATAATTTCTCACCATATCGTACATTCACAAAGAGTGAGAGTG
AAAAGATTTCCAACTTTACCATTGACTCCCTXXXXXXXXXXGCTTCTCCATTAATTATGA
GTATTTGGACTGTACCCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATG
ATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCT
TATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCT
GAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCT
TCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAAT
TGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATCG
GTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTC
CGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATT
ATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTC
CAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCAT
TTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCT
TCATACCATGCTCACAATATTGTTTTATTCTGGTACTGGTTTCT

VEFISFLGSALHLNNFTNPCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVSRTF
RTAISMDYPSENLWIGLLDDSVNYRESRGWAHLQSVEKNFLYVLLQKAVYSVHNIRPPVT
SQHEDPHGILNETSSKIESSTKEVIEAEVQWFIEYFLLNSWFGVGQEIPRDADDAERALI
AKLRDDNFSPYRTFTKSESEKISNFTIDS---

---ASPLIMSIWTVPNRCKRSNHFHSRRYDSCNGVTKSHSIYDS*sqetl*sr*ewsitl
grsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketss
l*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyd
ecct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfil
vlvs

Frame A:
l*slshfwvqhci*itlpihvllfww*hwnkslpreersiqpl*ctfvltknhhplyhvl
lelqslwiiqvktfglvywmil*iivnqevghifnrlkrisfmysykrqfipftifvhl*
qvnmkihmvf*mkpvqrlnpqqrkslkqrfngllnisy*ihglvlvkrfqempmmlnvl*
slnfvmiishhivhsqrvrvkrfptlpltp---

---ASPLIMSIWTVPNRCKRSNHFHSRRYDSCNGVTKSHSIYDS*sqetl*sr*ewsitl
grsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketss
l*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyd
ecct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfil
vlvs

Frame B:
crvylifgfsiafe*lyqsmyfcfggnigtnpcqekkeasnrydvrlylqrttihcityf
*ncnlyglsk*kpldwfig*fckls*ikrlgtssig*kefplctltkgslfrsqysstcn
kst*rstwysk*nqfkd*ilnkgsh*srgsmvy*ifpiefmvwcwsrdskrcr*c*tcfn
r*ts***fltisyihke*e*kdfqlyh*lp---

---llh*l*vfglypivvkdpiifilvgmipvmvlprviqymilrakrpyeagksgpslw
veatdlwraeqtffgfagtyisswregsasivkllkarkisrhklamwnwkrdfvkkpvv
cevfrqtksvnendnaqessgkhkaeqsfrtsnkesdtiknsrlflpniilfvvnilamm
savlrfncfqndmwllvvvagfsfstlwhlwsfipmalrqsekqwpyassyhahnivlfw
ywf

Frame C:
VEFISFLGSALHLNNFTNPCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVSRTF
RTAISMDYPSENLWIGLLDDSVNYRESRGWAHLQSVEKNFLYVLLQKAVYSVHNIRPPVT
SQHEDPHGILNETSSKIESSTKEVIEAEVQWFIEYFLLNSWFGVGQEIPRDADDAERALI
AKLRDDNFSPYRTFTKSESEKISNFTIDS---

---fsinyeyldctqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg
*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*f
vkfsvklnrsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**
vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfysg
tgf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR209 (CHR209Q) /CSM/CH/CHR2-A/CHR209Q.Seq.d/                       2644   0.0
CHE872 (CHE872Q) /CSM/CH/CHE8-C/CHE872Q.Seq.d/                       1425   0.0
AHL455 (AHL455Q) /CSM/AH/AHL4-C/AHL455Q.Seq.d/                       1425   0.0
SHK732 (SHK732Q) /CSM/SH/SHK7-B/SHK732Q.Seq.d/                       1413   0.0
SHG583 (SHG583Q) /CSM/SH/SHG5-D/SHG583Q.Seq.d/                       1411   0.0
AHK241 (AHK241Q) /CSM/AH/AHK2-B/AHK241Q.Seq.d/                       1411   0.0
AHB878 (AHB878Q) /CSM/AH/AHB8-D/AHB878Q.Seq.d/                       1411   0.0
SHK160 (SHK160Q) /CSM/SH/SHK1-C/SHK160Q.Seq.d/                       1409   0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/                       1409   0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/                       1409   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1332   0.0    2
BX119928|BX119928.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  CTD-2022C3.    34   5.3    5
CX655723|CX655723.1 PO02039A06 Poplar SC cDNA library Populus alba x Populus tremula var. glandulosa cDNA clone PO02039A06 5', mRNA sequence.    44   7.6    1
CX175850|CX175850.1 B04_69-65_04.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoides cDNA, mRNA sequence.    44   7.6    1
CJ395546|CJ395546.1 Molgula tectiformis cDNA, gonad clone:mtgd025l22, 5' end.    44   7.6    1
CJ352353|CJ352353.1 Molgula tectiformis cDNA, cleaving embryo clone:mtcl022l02, 5' end.    44   7.6    1
CA929806|CA929806.1 MTU2CA.P3.A01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    44   7.6    1
CA929196|CA929196.1 MTU2CA.P10.C05 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.    44   7.6    1
AC156264|AC156264.1 Takifugu rubripes, *** SEQUENCING IN PROGRESS ***, 10 ordered pieces.    44   7.6    1
AC152510|AC152510.3 Bos taurus clone CH240-16D7, WORKING DRAFT SEQUENCE, 24 unordered pieces.    44   7.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   456   e-128
CP000137_363(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4...    50   2e-04
CP001075_288(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid ...    49   4e-04
CP000320_131(CP000320|pid:none) Nitrobacter hamburgensis X14 pla...    48   7e-04
CP000494_3389(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    47   0.002
CP001001_369(CP001001|pid:none) Methylobacterium radiotolerans J...    46   0.003
CP001037_1366(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    45   0.004
CP000951_2081(CP000951|pid:none) Synechococcus sp. PCC 7002, com...    44   0.013
CP001029_1254(CP001029|pid:none) Methylobacterium populi BJ001, ...    44   0.013
CP001298_1161(CP001298|pid:none) Methylobacterium chloromethanic...    44   0.017

 psg: 0.75  gvh: 0.60  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.11
 nuc: 0.15  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHR209 is nuc

>CHR209F.Seq
TTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAATCCAT
GTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCATC
CAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACGTACTT
TTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGATG
ATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAATT
TCCTTTATGTACTCTTACAAAAGGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTAA
CAAGTCAACATGAAGATCCACATGGTATTCTAAATGAAACCAGTTCAAAGATTGAATCCT
CAACAAAGGAAGTCATTGAAGCAGAGGTTCAATGGTTTATTGAATATTTCCTATTGAATT
CATGGTTTGGTGTTGGTCAAGAGATTCCAAGAGATGCCGATGATGCTGAACGTGCTTTAA
TCGCTAAACTTCGTGATGATAATTTCTCACCATATCGTACATTCACAAAGAGTGAGAGTG
AAAAGATTTCCAACTTTACCATTGACTCCCTNNNNNNNNNN

>CHR209Z.Seq
NNNNNNNNNNGCTTCTCCATTAATTATGAGTATTTGGACTGTACCCAATCGTTGTAAAAG
ATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTC
AATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTT
GGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTT
ATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGA
TTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAG
TTTGTGAAGTTTTCCGTCAAACTAAATCGGTCAATGAAAATGATAATGCTCAAGAATCAA
GTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTA
AAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGA
TGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAG
CTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTC
AAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCT
GGTACTGGTTTCT

>CHR209P.Seq
TTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAATCCAT
GTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAAGCATC
CAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACGTACTT
TTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATTGGATG
ATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAAGAATT
TCCTTTATGTACTCTTACAAAAGGCAGTTTATTCCGTTCACAATATTCGTCCACCTGTAA
CAAGTCAACATGAAGATCCACATGGTATTCTAAATGAAACCAGTTCAAAGATTGAATCCT
CAACAAAGGAAGTCATTGAAGCAGAGGTTCAATGGTTTATTGAATATTTCCTATTGAATT
CATGGTTTGGTGTTGGTCAAGAGATTCCAAGAGATGCCGATGATGCTGAACGTGCTTTAA
TCGCTAAACTTCGTGATGATAATTTCTCACCATATCGTACATTCACAAAGAGTGAGAGTG
AAAAGATTTCCAACTTTACCATTGACTCCCT----------GCTTCTCCATTAATTATGA
GTATTTGGACTGTACCCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATG
ATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCT
TATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCT
GAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCT
TCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAAT
TGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATCG
GTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTC
CGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATT
ATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTC
CAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCAT
TTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCT
TCATACCATGCTCACAATATTGTTTTATTCTGGTACTGGTTTCT