CHR202
Library CH
(Link to library)
Clone ID CHR202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID CHR202P
(Link to Original site)
Representative DNA sequence
>CHR202 (CHR202Q) /CSM/CH/CHR2-A/CHR202Q.Seq.d/
ACTGCGCAAAAGCCAGTGTCAATAAATATAAAGATATTTGATCAATTACCTTTATATAAT
GATAATTTTGGTTCACAATCAAGAGCAGCAACCATTAAGAGTATGGTTGCAACATCATTA
AATACAACATTTAAAACTCCAAGTTTAGGATCAGCCACCTCAAGCTTACCATCACCACAA
TTATTCCAATATTGGTTTCAATCAAATTTTGCCAATGAAACAAAAAACTCTGGTTTAAAT
GCCCCATTAACAAGAACAATTACCTTAAACTATGATTCTGACAGTGGTAATTATATTTTC
AACAATCCAAATTTCTTTTTAATTGATACAGATGGATTCGATAAAACAGCATCAAATCGT
ATTTATAAAGACTCAACTGGTACATATCATAATTACCATTATTGTGTTGCCTTTAATTAT
GTTTTTAAACCAGACGGCCAAGGAAAAGAAATGTTTAAATTCACTGGTAATGATGATGTT
TGGGTATTTGTAAACAATAAATTATTATTAGATGGCGGTGGTGTTCGTTCACCAGAGGCA
ACAACAGTTGATTTCACAAAAGCCGGACTTGTTAAAAGTCAAGAAACTCCATTAGATTTC
TTTTAXXXXXXXXXXATGTTCAGGTTGTAACACTTGTGATGTTAAGACTGGTAAATGTGT
AGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACTGATAATGCTTGTGTCGCTTC
AGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATG
TGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAAC
TCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGG
TTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGA
TGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCA
AGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGA
AGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTAT
TGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAA
AGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCTAATCC
ATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACATAAAT
CCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGTCTTAT
TTTCATAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
TAQKPVSINIKIFDQLPLYNDNFGSQSRAATIKSMVATSLNTTFKTPSLGSATSSLPSPQ
LFQYWFQSNFANETKNSGLNAPLTRTITLNYDSDSGNYIFNNPNFFLIDTDGFDKTASNR
IYKDSTGTYHNYHYCVAFNYVFKPDGQGKEMFKFTGNDDVWVFVNNKLLLDGGGVRSPEA
TTVDFTKAGLVKSQETPLDFF---

---CSGCNTCDVKTGKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDL
GDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAK
YGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIAS
VVVVGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqk
pnl*nhvlf*f*ffsslifik


Translated Amino Acid sequence (All Frames)
Frame A:
TAQKPVSINIKIFDQLPLYNDNFGSQSRAATIKSMVATSLNTTFKTPSLGSATSSLPSPQ
LFQYWFQSNFANETKNSGLNAPLTRTITLNYDSDSGNYIFNNPNFFLIDTDGFDKTASNR
IYKDSTGTYHNYHYCVAFNYVFKPDGQGKEMFKFTGNDDVWVFVNNKLLLDGGGVRSPEA
TTVDFTKAGLVKSQETPLDFF---

---mfrl*hl*c*dw*mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*f
g**myglqlylgrwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ck
iwlhsir*kmcs****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyck
cccswcccfrccyicg*erl*clenksrkcygsfts*siiysik*wr*kstl*ltninpk
t*fikscivliliffqsyfhk

Frame B:
lrksqcq*i*rylinylyimiilvhnqeqqplrvwlqhh*iqhlklqv*dqppqayhhhn
ysnigfnqilpmkqktlv*mph*qeqlp*tmiltvviifstiqisf*liqmdsikqhqiv
fiktqlvhiiitiivlplimflnqtakekkclnslvmmmfgyl*tinyy*mavvfvhqrq
qqlisqkpdllkvkklh*isf---

---CSGCNTCDVKTGKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDL
GDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAK
YGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIAS
VVVVGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqk
pnl*nhvlf*f*ffsslifik

Frame C:
cakasvnkykdi*sitfi***fwftikssnh*eygcniikyni*nskfrishlkltitti
ipilvsikfcq*nkklwfkcpinknnylkl*f*qw*lyfqqskflfn*yrwir*nsiksy
l*rlnwyis*lpllccl*lcf*trrprkrnv*ihw***clgickq*iiirwrwcsftrgn
ns*fhksrtc*ksrnsirfll---

---vqvvtlvmlrlvnv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviw
vinvwftvvpwkvvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqn
mvafnsiedvlliivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqv
ll*lvllf*vllylrvrkvmmlgkqvkemlwqlhklihyilnqvmevkihsithqhkskn
liykimycfnfnffpvlfs*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR202 (CHR202Q) /CSM/CH/CHR2-A/CHR202Q.Seq.d/ 2619 0.0
SHG135 (SHG135Q) /CSM/SH/SHG1-B/SHG135Q.Seq.d/ 1459 0.0
SFE864 (SFE864Q) /CSM/SF/SFE8-C/SFE864Q.Seq.d/ 1459 0.0
CHR774 (CHR774Q) /CSM/CH/CHR7-D/CHR774Q.Seq.d/ 1459 0.0
AHM704 (AHM704Q) /CSM/AH/AHM7-A/AHM704Q.Seq.d/ 1457 0.0
CHI889 (CHI889Q) /CSM/CH/CHI8-D/CHI889Q.Seq.d/ 1455 0.0
CHL113 (CHL113Q) /CSM/CH/CHL1-A/CHL113Q.Seq.d/ 1453 0.0
AHN266 (AHN266Q) /CSM/AH/AHN2-C/AHN266Q.Seq.d/ 1453 0.0
CHH363 (CHH363Q) /CSM/CH/CHH3-C/CHH363Q.Seq.d/ 1451 0.0
CHF537 (CHF537Q) /CSM/CH/CHF5-B/CHF537Q.Seq.d/ 1451 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds. 56 1e-11 4
AJ548837|AJ548837.1 Dictyostelium discoideum mRNA for extracellular signalling molecule DicA (dicA gene). 60 3e-09 3
AJ548838|AJ548838.1 Dictyostelium discoideum dicA gene for extracellular signalling molecule DicA, exons 1-2. 60 4e-09 3
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 40 1e-08 6
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 42 1e-06 6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 66 2e-06 1
AR550782|AR550782.1 Sequence 5913 from patent US 6747137. 38 0.079 2
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence. 50 0.13 1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence. 50 0.13 1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence. 50 0.13 1
dna update 2005.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 452 e-125
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 198 3e-49
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 193 1e-47
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 190 1e-46
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 181 7e-44
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 149 8e-42
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 151 1e-37
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 145 4e-33
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 117 6e-32
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 135 4e-30
protein update 2009. 4.12
PSORT

psg: 0.74 gvh: 0.44 alm: 0.16 top: 0.73 tms: 0.07 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.01 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHR202 is cyt

5' end seq. ID CHR202F
5' end seq.
>CHR202F.Seq
ACTGCGCAAAAGCCAGTGTCAATAAATATAAAGATATTTGATCAATTACCTTTATATAAT
GATAATTTTGGTTCACAATCAAGAGCAGCAACCATTAAGAGTATGGTTGCAACATCATTA
AATACAACATTTAAAACTCCAAGTTTAGGATCAGCCACCTCAAGCTTACCATCACCACAA
TTATTCCAATATTGGTTTCAATCAAATTTTGCCAATGAAACAAAAAACTCTGGTTTAAAT
GCCCCATTAACAAGAACAATTACCTTAAACTATGATTCTGACAGTGGTAATTATATTTTC
AACAATCCAAATTTCTTTTTAATTGATACAGATGGATTCGATAAAACAGCATCAAATCGT
ATTTATAAAGACTCAACTGGTACATATCATAATTACCATTATTGTGTTGCCTTTAATTAT
GTTTTTAAACCAGACGGCCAAGGAAAAGAAATGTTTAAATTCACTGGTAATGATGATGTT
TGGGTATTTGTAAACAATAAATTATTATTAGATGGCGGTGGTGTTCGTTCACCAGAGGCA
ACAACAGTTGATTTCACAAAAGCCGGACTTGTTAAAAGTCAAGAAACTCCATTAGATTTC
TTTTANNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID CHR202Z
3' end seq.
>CHR202Z.Seq
NNNNNNNNNNATGTTCAGGTTGTAACACTTGTGATGTTAAGACTGGTAAATGTGTAGCTC
AAGATTCTCATTGTGATGATGGTAATCCATGTACTGATAATGCTTGTGTCGCTTCAGCTA
ATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATT
TGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAAC
GTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTA
AATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAA
AATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAG
GTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATT
ATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAA
GTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTT
ATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCTAATCCATTAT
ATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACATAAATCCAAA
AACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGTCTTATTTTCA
TAAAAA
Length of 3' end seq. 786
Connected seq. ID CHR202P
Connected seq.
>CHR202P.Seq
ACTGCGCAAAAGCCAGTGTCAATAAATATAAAGATATTTGATCAATTACCTTTATATAAT
GATAATTTTGGTTCACAATCAAGAGCAGCAACCATTAAGAGTATGGTTGCAACATCATTA
AATACAACATTTAAAACTCCAAGTTTAGGATCAGCCACCTCAAGCTTACCATCACCACAA
TTATTCCAATATTGGTTTCAATCAAATTTTGCCAATGAAACAAAAAACTCTGGTTTAAAT
GCCCCATTAACAAGAACAATTACCTTAAACTATGATTCTGACAGTGGTAATTATATTTTC
AACAATCCAAATTTCTTTTTAATTGATACAGATGGATTCGATAAAACAGCATCAAATCGT
ATTTATAAAGACTCAACTGGTACATATCATAATTACCATTATTGTGTTGCCTTTAATTAT
GTTTTTAAACCAGACGGCCAAGGAAAAGAAATGTTTAAATTCACTGGTAATGATGATGTT
TGGGTATTTGTAAACAATAAATTATTATTAGATGGCGGTGGTGTTCGTTCACCAGAGGCA
ACAACAGTTGATTTCACAAAAGCCGGACTTGTTAAAAGTCAAGAAACTCCATTAGATTTC
TTTTA----------ATGTTCAGGTTGTAACACTTGTGATGTTAAGACTGGTAAATGTGT
AGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACTGATAATGCTTGTGTCGCTTC
AGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTGCTAAATG
TGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTAATGCAAC
TCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGG
TTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTCAATGTGA
TGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCA
AGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGA
AGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTAT
TGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAA
AGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCTAATCC
ATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACATAAAT
CCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGTCTTAT
TTTCATAAAAA
Length of connected seq. 1381
Full length Seq ID -
Full length Seq. -
Length of full length seq. -