CHR196
Library CH
(Link to library)
Clone ID CHR196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHR196 (CHR196Q) /CSM/CH/CHR1-D/CHR196Q.Seq.d/
XXXXXXXXXXTATTCCAAGAAATACAACAATTCCCATGTAAGAAAACTCAAACCTTCTCT
ACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATG
ACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGA
GGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATT
sequence update 2002. 9.10
Translated Amino Acid sequence
---FQEIQQFPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRG
VPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDE
QQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKD
EYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDE


Translated Amino Acid sequence (All Frames)
Frame A:
---iprnttipm*ensnllyil**strcinssl*r*tcydqr**fig*i*tfwyststkr
ctts*syi*c*ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*
ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg
*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrri


Frame B:
---FQEIQQFPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRG
VPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDE
QQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKD
EYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDE


Frame C:
---skkynnshvrklkpslhtliinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqev
yhklklhlmlmqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmn
nkkivlnqrinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrm
nmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 1358 0.0
VHD617 (VHD617Q) /CSM/VH/VHD6-A/VHD617Q.Seq.d/ 1358 0.0
VHA854 (VHA854Q) /CSM/VH/VHA8-C/VHA854Q.Seq.d/ 1358 0.0
CHR196 (CHR196Q) /CSM/CH/CHR1-D/CHR196Q.Seq.d/ 1358 0.0
CHM141 (CHM141Q) /CSM/CH/CHM1-B/CHM141Q.Seq.d/ 1358 0.0
CHL177 (CHL177Q) /CSM/CH/CHL1-D/CHL177Q.Seq.d/ 1358 0.0
CHI127 (CHI127Q) /CSM/CH/CHI1-B/CHI127Q.Seq.d/ 1358 0.0
CHE894 (CHE894Q) /CSM/CH/CHE8-D/CHE894Q.Seq.d/ 1356 0.0
VHK815 (VHK815Q) /CSM/VH/VHK8-A/VHK815Q.Seq.d/ 1354 0.0
VHA444 (VHA444Q) /CSM/VH/VHA4-B/VHA444Q.Seq.d/ 1352 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1312 0.0 2
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1304 0.0 2
BI773123|BI773123.1 kq45c07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence. 96 1e-46 3
BI772941|BI772941.1 kq08c08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence. 96 1e-46 3
BI773212|BI773212.1 kq63e05.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence. 96 1e-46 3
BI773035|BI773035.1 kq26d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:HS70_ONCVO P11503 HEAT SHOCK 70 KD PROTEIN ;, mRNA sequence. 96 1e-46 3
BI773038|BI773038.1 kq28d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:HS70_ONCVO P11503 HEAT SHOCK 70 KD PROTEIN ;, mRNA sequence. 96 1e-46 3
BI772945|BI772945.1 kq08h11.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence. 96 7e-45 3
DQ060429|DQ060429.1 Cryptosporidium baileyi strain sbcb heat shock protein 70-like gene, partial sequence. 96 1e-44 4
CJ378579|CJ378579.1 Molgula tectiformis cDNA, gastrula/neurula clone:mtga005e17, 3' end. 139 2e-44 4
dna update 2005.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 374 e-102
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 374 e-102
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 276 3e-73
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote... 275 7e-73
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s... 275 9e-73
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803... 275 1e-72
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 274 2e-72
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 274 2e-72
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot... 274 2e-72
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803... 273 3e-72
protein update 2009. 5.20
PSORT

psg: 0.79 gvh: 0.39 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHR196 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHR196Z
3' end seq.
>CHR196Z.Seq
NNNNNNNNNNTATTCCAAGAAATACAACAATTCCCATGTAAGAAAACTCAAACCTTCTCT
ACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATG
ACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGA
GGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATT
Length of 3' end seq. 695
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -