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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR194
Library CH
(Link to library)
Clone ID CHR194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID CHR194P
(Link to Original site)
Representative DNA sequence 
>CHR194 (CHR194Q) /CSM/CH/CHR1-D/CHR194Q.Seq.d/
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAAXXXXXXXXXXGGTCGATAATGGTGATGGTACATATGATGTTGAATT
TGAACCAAAAGAAGCCGGTGACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAA
TGGTTTCCCAAAGACTGTTACCGTTAAACCAGCCCCATCCGCTGAACACTCTTATGCTGA
AGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGT
TGACACTAAAGGTGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGG
TCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGT
TGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCC
AATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATC
ATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTA
TGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---VDNGDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSYAEGEGLV
KVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAP
VEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKF
EVSITGPAE
Translated Amino Acid sequence (All Frames) 
Frame A:
ilpflfiyllnyylfikllfielcklpsnkf*yfvyiflyk*kk---

---gr*w*wyi*c*i*tkrsr*lcyqshfrw*qrqwfpkdcyr*tspir*tllc*r*rfs
qsi**cps*ihyfrr*h*rccsyrww*si*sryqwsrwfsr*cqsyr*q*rylwccl*cp
s*r*lqc*chppw*snqkyanrcqmh*rcqw*rfiirfihfyrrc*k*er*s*nlww**i
*slyhwss*

Frame B:
syhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---VDNGDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSYAEGEGLV
KVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAP
VEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKF
EVSITGPAE

Frame C:
ltifiylfikllfiy*iiiy*vv*ttfq*ilifciyilv*ikkk---

---simvmvhmmlnlnqkkpvtmlsisl*mvttsmvsqrllplnqphplntlmlkvkv*s
kylimpqlnslfspltlkvllvpmvvihlkslsmvqmv*slmpklpitmtvlmvlsmmpq
lkvttmlmspsvviqskicqsmsnalkvpmvkihhsvhsllpsllkirkvklkpmvvinl
kslslvqlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP113 (VHP113Q) /CSM/VH/VHP1-A/VHP113Q.Seq.d/                       1110   0.0
VHO119 (VHO119Q) /CSM/VH/VHO1-A/VHO119Q.Seq.d/                       1110   0.0
VHA759 (VHA759Q) /CSM/VH/VHA7-C/VHA759Q.Seq.d/                       1110   0.0
SHL695 (SHL695Q) /CSM/SH/SHL6-D/SHL695Q.Seq.d/                       1110   0.0
SHK682 (SHK682Q) /CSM/SH/SHK6-D/SHK682Q.Seq.d/                       1110   0.0
SHK588 (SHK588Q) /CSM/SH/SHK5-D/SHK588Q.Seq.d/                       1110   0.0
SHJ823 (SHJ823Q) /CSM/SH/SHJ8-A/SHJ823Q.Seq.d/                       1110   0.0
SHG710 (SHG710Q) /CSM/SH/SHG7-A/SHG710Q.Seq.d/                       1110   0.0
SHG675 (SHG675Q) /CSM/SH/SHG6-D/SHG675Q.Seq.d/                       1110   0.0
SHG278 (SHG278Q) /CSM/SH/SHG2-D/SHG278Q.Seq.d/                       1110   0.0
own update 2002.10. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15430|X15430.1 Dictyostelium discoideum mRNA for gelation factor.  1110   0.0    1
AZ672601|AZ672601.1 ENTMD77TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.045  2
BH158643|BH158643.1 ENTTI80TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.046  2
BH136620|BH136620.1 ENTOX80TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.048  2
AZ544960|AZ544960.1 ENTFM28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.048  2
AZ544906|AZ544906.1 ENTFK82TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.049  2
AF080395|AF080395.1 Entamoeba histolytica actin binding protein (abp2) mRNA, partial cds.    46   0.092  2
AQ543434|AQ543434.1 RPCI-11-349G2.TV RPCI-11 Homo sapiens genomic clone RPCI-11-349G2, genomic survey sequence.    48   0.25   1
AL356308|AL356308.16 Human DNA sequence from clone RP11-475L16 on chromosome 10.    48   0.25   1
CR940353|CR940353.1 Theileria annulata genomic DNA chromosome 4.    36   0.45   2
dna update 2005.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...   100   5e-20
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    97   3e-19
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co...    88   2e-16
BX664723_1(BX664723|pid:none) Human DNA sequence from clone WI2-...    83   9e-15
AL807376_3(AL807376|pid:none) Mouse DNA sequence from clone RP23...    82   2e-14
AK131179_1(AK131179|pid:none) Mus musculus mRNA for mFLJ00343 pr...    80   7e-14
BC151024_1(BC151024|pid:none) Mus musculus filamin, alpha, mRNA ...    80   7e-14
AL807376_2(AL807376|pid:none) Mouse DNA sequence from clone RP23...    80   7e-14
FJ416060_1(FJ416060|pid:none) Rattus norvegicus filamin alpha (F...    80   7e-14
AL807376_1(AL807376|pid:none) Mouse DNA sequence from clone RP23...    80   7e-14
protein update 2009. 4.12
PSORT 

 psg: 0.89  gvh: 0.39  alm: 0.36  top: 0.40  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane

>> prediction for CHR194 is cyt
5' end seq. ID CHR194F
5' end seq. 
>CHR194F.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 144
3' end seq. ID CHR194Z
3' end seq. 
>CHR194Z.Seq
NNNNNNNNNNGGTCGATAATGGTGATGGTACATATGATGTTGAATTTGAACCAAAAGAAG
CCGGTGACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAATGGTTTCCCAAAGA
CTGTTACCGTTAAACCAGCCCCATCCGCTGAACACTCTTATGCTGAAGGTGAAGGTTTAG
TCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTG
TTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAG
TCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCC
CAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGC
CAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCA
CTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAAT
TTGAAGTCTCTATCACTGGTCCAGCTGAAG
Length of 3' end seq. 570
Connected seq. ID CHR194P
Connected seq. 
>CHR194P.Seq
ATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATTTATTAAATTATTATTT
ATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGTATATATATTCTTGTAT
AAATAAAAAAAAAA----------GGTCGATAATGGTGATGGTACATATGATGTTGAATT
TGAACCAAAAGAAGCCGGTGACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAA
TGGTTTCCCAAAGACTGTTACCGTTAAACCAGCCCCATCCGCTGAACACTCTTATGCTGA
AGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGT
TGACACTAAAGGTGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGG
TCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGT
TGTCTATGATGCCCCAGTTGAAGGTAACTACAATGTTAATGTCACCCTCCGTGGTAATCC
AATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATC
ATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTA
TGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAAG
Length of connected seq. 694
Full length Seq ID -
Full length Seq. -
Length of full length seq. -