CHR189
Library CH
(Link to library)
Clone ID CHR189
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHR189P
(Link to Original site)
Representative DNA sequence
>CHR189 (CHR189Q) /CSM/CH/CHR1-D/CHR189Q.Seq.d/
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATTTCT
TTTTCTTTTTTTGAAATNGGTATAATTAAAAATGTATAGTAAAAAATATACATCCTTTGT
AATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANA
TGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANAXXXXXX
XXXXCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGA
GGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAA
GATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCAT
TGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGC
TGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAA
TGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAA
AAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGT
TCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCA
AAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAG
TGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGA
GAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCA
ATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGA
AAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTNCTT
TTTAAAAAACTA
sequence update 2002.10.25
Translated Amino Acid sequence
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkkrflflflkxv*LKMYSKKYTSFV
IVLILSCIISTCXSNQISEXXGKAINQKLNENIEKVE---

---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxflkn


Translated Amino Acid sequence (All Frames)
Frame A:
kiinllsnnyfffsfflkfk**k**klilkkrnvkkkkisfsffexgiiknv**kiyilc
nsidfimyhfnmxi*snf*xxg*sn*skik*ky*ks*x---

---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxflkn

Frame B:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkkrflflflkxv*LKMYSKKYTSFV
IVLILSCIISTCXSNQISEXXGKAINQKLNENIEKVE---

---qrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinny*nknkiknnliilxf*kt

Frame C:
nnkftik*lfflfflfkv*iieiikinikkker*kkkdfffff*nxyn*kcivknihpl*
*y*fyhvsfqhvhlikflxmxvkqlikn*mkilkklx---

---reti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iks
rkkstiirtrtkskii*sfxlfkkl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 765 0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 765 0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 765 0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/ 765 0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/ 765 0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/ 765 0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/ 765 0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/ 765 0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/ 765 0.0
SHL546 (SHL546Q) /CSM/SH/SHL5-B/SHL546Q.Seq.d/ 765 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 765 0.0 6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 5e-25 1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 3e-06 10
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 44 3e-05 15
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 34 1e-04 14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 2e-04 16
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 2e-04 10
AX344618|AX344618.1 Sequence 43 from Patent WO0200927. 42 9e-04 5
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 34 0.001 12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 0.001 16
dna update 2005.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 300 6e-80
AE014188_14(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 40 0.10
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l... 40 0.14
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 38 0.67
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei... 37 0.88
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 1.2
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr... 37 1.2
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 37 1.5
AE014187_317(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.5
CP000077_909(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 37 1.5
protein update 2009. 4.12
PSORT

psg: 0.98 gvh: 0.71 alm: 0.58 top: 0.27 tms: 0.00 mit: 0.42 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: extracellular, including cell wall
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHR189 is nuc

5' end seq. ID CHR189F
5' end seq.
>CHR189F.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATTTCT
TTTTCTTTTTTTGAAATNGGTATAATTAAAAATGTATAGTAAAAAATATACATCCTTTGT
AATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANA
TGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANANNNNNN
NNNN
Length of 5' end seq. 304
3' end seq. ID CHR189Z
3' end seq.
>CHR189Z.Seq
NNNNNNNNNNCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGT
TCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAA
TCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTC
TTNCTTTTTAAAAAACTA
Length of 3' end seq. 798
Connected seq. ID CHR189P
Connected seq.
>CHR189P.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGATTTCT
TTTTCTTTTTTTGAAATNGGTATAATTAAAAATGTATAGTAAAAAATATACATCCTTTGT
AATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAANA
TGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANA------
----CCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGA
GGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAA
GATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCAT
TGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGC
TGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAA
TGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAA
AAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGT
TCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCA
AAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAG
TGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGA
GAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCA
ATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGA
AAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTNCTT
TTTAAAAAACTA
Length of connected seq. 1082
Full length Seq ID -
Full length Seq. -
Length of full length seq. -