CHR186
Library CH
(Link to library)
Clone ID CHR186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16328-1
Original site URL
Representative seq. ID CHR186P
(Link to Original site)
Representative DNA sequence
>CHR186 (CHR186Q) /CSM/CH/CHR1-D/CHR186Q.Seq.d/
AGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTACCATTAATTATTATT
TTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGAGAAGAGGCATATTTTGAATATAGG
ATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGA
AGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAA
CCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTT
GAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAA
CTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTA
TATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAA
CAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCA
GAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATT
CATGAAAAACCAGTTTATGAAGGTGATATCAAACAAGATTTATTACGTCGTAAAAATAAA
AATAATCCAGNAGAAACAAGTATATGAAGGTGATATTAAACAAGATTTATTACGTCCGTA
AAXXXXXXXXXXGTATNNCCAGGNTGATACTTTTCAAGAATNTTTTAAGGTATTATTAAT
TCGTGATGAAGAAAGTTTACGAAAGGTGATATTAACCAAGNNCTTTCCAGGTGGTAAAAA
TCATCAAGAGAAAACCTGTTTTATGAAGGGTGATATCCAANCAAGACTTATTACGTCGTA
AAAAATTCTTGATAAACNTGATTCAAAACAAGTATATCCAGGTGATGTTATTCAAGATAT
TTTACGTGTTATTAATCGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTT
ATTACATCGTAATAACAAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACA
AGATTTATTACGTCGTAATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATAT
TATTCAAGATATTTTACGTGTTTTAAATCATGAAGAGAAAGAAGTTTACGAAGGTGATAT
TAAACAAAATTTGTTGCGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGG
TGATATTAAACAAGATTTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTA
TGAAGGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACA
AGTATATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGA
AGTAAATGAGGATGAAATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGA
AGAGGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGC
ATTTGTTGAACAACATCCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAGACA
ATAAATTACTATCAATAAAAATAATTATT
sequence update 2002.10.25
Translated Amino Acid sequence
flnnnikne*ilfitinyyfnnfvwcffyprrrgif*i*ds**kiyfqt***y*nstckk
siiw**nkfnkrcr*ny*qtnri*y*lgfss*prlsyff*i*nrvl*pkipvckwiy**t
l*k**llflpmgwftc*giifwry*trsits***kstsktsi*r*y*trfnss*k*nssr
ktna*rgy*ttsffpyqkys*ktsl*r*yqtrfits*k*k*SXRNKYMKVILNKIYYVRK
---

---YXQXDTFQEXFKVLLIRDEESLRKVILTKXFPGGKNHQEKTCFMKGDIQXRLITS*k
ildkxdskqvypgdviqdilrvinrdekevyegdikqdllhrnnknrqekpvyegdikqd
llrrnnknhqeeqvyqgdiiqdilrvlnheekevyegdikqnllrrknhdhpekeiyegd
ikqdllrrnnknhqeklvyegdikqdllrrnnknhkeeqvyqgdiiqdilrvlnhgekev
nedeiekdlmqrknhhqeeeasedleeeigklwnkqsqafveqhpnqhnnqktihlsrq*
itinknny


Translated Amino Acid sequence (All Frames)
Frame A:
sf*iii*kmnkfyslpliiiliiscgaffihgeeayfeyrihnekfifklsddikiqhar
rvlsgdeisltnvvgkiinkpieyninwdfhldpdsvtffesetefcnqkfqyvngyidk
lcesdncyfcpwdgslvrelyfgdikqdlllrnnenqqvkqvyegdikqdlirrknkihp
ekqmheedikqqvffriknihekpvyegdikqdllrrknknnpxetsi*r*y*trfitsv
---

---vxpg*yfsrxf*giins**rkftkgdinqxlsrw*kssrenlfyeg*ypxktyyvvk
ns**t*fktsisr*cysryftcy*s**krsl*r*y*trlits**qkssretsi*r*h*tr
fits**qkssrrtsisr*yysryftcfks*rerslrr*y*tkfvaskks*ssrkrnl*r*
y*trfits**qkpsretcl*r*h*trfits**qks*rrtsisr*yysryftcfkswrkrs
k*g*n*krfdat*kspsrrrgf*rlgrrnwktle*tkssic*ttskptqqsknnslvkti
nyyq*k*l

Frame B:
vfk**ykk*infihyh*llf**frvvlflstekrhilnigfimknlfsnlvmilkfnmqe
eyylvmk*v*qtl*vklltnq*niiligifiltqtqllflnlkqsfvtknssm*mdilin
fvkviivifahgmvhllgnyileilnkiyyfvimkink*nkymkvilnki*fvvkikfiq
knkcmkrilnnkffsvskifmknqfmkvisnkiyyvvkikiiqxkqvyegdikqdllrp*
---

---YXQXDTFQEXFKVLLIRDEESLRKVILTKXFPGGKNHQEKTCFMKGDIQXRLITS*k
ildkxdskqvypgdviqdilrvinrdekevyegdikqdllhrnnknrqekpvyegdikqd
llrrnnknhqeeqvyqgdiiqdilrvlnheekevyegdikqnllrrknhdhpekeiyegd
ikqdllrrnnknhqeklvyegdikqdllrrnnknhkeeqvyqgdiiqdilrvlnhgekev
nedeiekdlmqrknhhqeeeasedleeeigklwnkqsqafveqhpnqhnnqktihlsrq*
itinknny

Frame C:
flnnnikne*ilfitinyyfnnfvwcffyprrrgif*i*ds**kiyfqt***y*nstckk
siiw**nkfnkrcr*ny*qtnri*y*lgfss*prlsyff*i*nrvl*pkipvckwiy**t
l*k**llflpmgwftc*giifwry*trsits***kstsktsi*r*y*trfnss*k*nssr
ktna*rgy*ttsffpyqkys*ktsl*r*yqtrfits*k*k*SXRNKYMKVILNKIYYVRK
---

---xxrxilfknxlryy*fvmkkvyer*y*pxxfqvvkiikrkpvl*rvisxqdllrrkk
flinxiqnkyiqvmlfkifyvllivmkkkfmkvilnktyyivitkivkrnqymkvtlnki
yyvvitkiikknkyikvilfkifyvf*imkrkkftkvilnkiccvekimiiqkkkfmkvi
lnkiyyvvitktikrnlfmkvtlnkiyyvvitkiikknkyikvilfkifyvf*imekkk*
mrmklkki*cnvkitikkkrllktwkkklenfginkvkhllnniqtnttikkqftcqdnk
llsikiii

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR186 (CHR186Q) /CSM/CH/CHR1-D/CHR186Q.Seq.d/ 2904 0.0
CHR763 (CHR763Q) /CSM/CH/CHR7-C/CHR763Q.Seq.d/ 1588 0.0
SHL720 (SHL720Q) /CSM/SH/SHL7-A/SHL720Q.Seq.d/ 1556 0.0
AHR270 (AHR270Q) /CSM/AH/AHR2-C/AHR270Q.Seq.d/ 1556 0.0
AHC684 (AHC684Q) /CSM/AH/AHC6-D/AHC684Q.Seq.d/ 1556 0.0
CHR612 (CHR612Q) /CSM/CH/CHR6-A/CHR612Q.Seq.d/ 1552 0.0
AHM148 (AHM148Q) /CSM/AH/AHM1-B/AHM148Q.Seq.d/ 1552 0.0
AHH626 (AHH626Q) /CSM/AH/AHH6-B/AHH626Q.Seq.d/ 1552 0.0
SHL717 (SHL717Q) /CSM/SH/SHL7-A/SHL717Q.Seq.d/ 1550 0.0
CHQ744 (CHQ744Q) /CSM/CH/CHQ7-B/CHQ744Q.Seq.d/ 1548 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M29237|M29237.1 D.discoideum cyclic AMP-inducible protein gene, complete cds. 846 0.0 8
CN952096| membrane protein, putative [Wolbachia endosymbiont of Drosophila. Score = 34.3 bits (77), Expect = 2.0, mRNA sequence. 30 1e-05 5
AE015943|AE015943.1 Clostridium tetani E88, section 8 of 10 of the complete genome. 36 0.008 15
AC115588|AC115588.2 Dictyostelium discoideum chromosome 2 map complement(5515123-5500836) strain AX4, complete sequence. 34 0.028 6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 0.032 12
AE017244|AE017244.1 Mycoplasma hyopneumoniae 7448, complete genome. 36 0.036 20
AL450107|AL450107.11 Human DNA sequence from clone RP11-495K23 on chromosome 13. 48 0.053 2
AY394561|AY394561.1 Campylobacter jejuni plasmid pTet, complete sequence. 42 0.062 8
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 32 0.062 17
CL118754|CL118754.1 ISB1-72L7_Sp6.1 ISB1 Silurana tropicalis genomic clone ISB1-72L7, genomic survey sequence. 36 0.11 3
dna update 2005.11.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ... 96 5e-18
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 84 1e-14
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 80 2e-13
AL844506_118(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 64 2e-08
(Q9MTL3) RecName: Full=Acetyl-coenzyme A carboxylase carboxyl tr... 60 2e-07
AM180355_2790(AM180355|pid:none) Clostridium difficile 630 compl... 52 5e-05
AF056936_1(AF056936|pid:none) Plasmodium falciparum mature paras... 50 2e-04
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr... 49 7e-04
AL844501_130(AL844501|pid:none) Plasmodium falciparum strain 3D7... 48 9e-04
EU262889_31(EU262889|pid:none) Oenothera biennis chloroplast, co... 48 9e-04
protein update 2009. 4.12
PSORT

psg: 0.72 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.04
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for CHR186 is nuc

5' end seq. ID CHR186F
5' end seq.
>CHR186F.Seq
AGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTACCATTAATTATTATT
TTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGAGAAGAGGCATATTTTGAATATAGG
ATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGA
AGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAA
CCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTT
GAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAA
CTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTA
TATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAA
CAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCA
GAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATT
CATGAAAAACCAGTTTATGAAGGTGATATCAAACAAGATTTATTACGTCGTAAAAATAAA
AATAATCCAGNAGAAACAAGTATATGAAGGTGATATTAAACAAGATTTATTACGTCCGTA
AANNNNNNNNNN
Length of 5' end seq. 732
3' end seq. ID CHR186Z
3' end seq.
>CHR186Z.Seq
NNNNNNNNNNGTATNNCCAGGNTGATACTTTTCAAGAATNTTTTAAGGTATTATTAATTC
GTGATGAAGAAAGTTTACGAAAGGTGATATTAACCAAGNNCTTTCCAGGTGGTAAAAATC
ATCAAGAGAAAACCTGTTTTATGAAGGGTGATATCCAANCAAGACTTATTACGTCGTAAA
AAATTCTTGATAAACNTGATTCAAAACAAGTATATCCAGGTGATGTTATTCAAGATATTT
TACGTGTTATTAATCGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTTAT
TACATCGTAATAACAAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACAAG
ATTTATTACGTCGTAATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATATTA
TTCAAGATATTTTACGTGTTTTAAATCATGAAGAGAAAGAAGTTTACGAAGGTGATATTA
AACAAAATTTGTTGCGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGGTG
ATATTAAACAAGATTTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTATG
AAGGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACAAG
TATATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGAAG
TAAATGAGGATGAAATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGAAG
AGGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGCAT
TTGTTGAACAACATCCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAGACAAT
AAATTACTATCAATAAAAATAATTATT
Length of 3' end seq. 927
Connected seq. ID CHR186P
Connected seq.
>CHR186P.Seq
AGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTACCATTAATTATTATT
TTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGAGAAGAGGCATATTTTGAATATAGG
ATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGA
AGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAA
CCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTT
GAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAA
CTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTA
TATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAA
CAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCA
GAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATT
CATGAAAAACCAGTTTATGAAGGTGATATCAAACAAGATTTATTACGTCGTAAAAATAAA
AATAATCCAGNAGAAACAAGTATATGAAGGTGATATTAAACAAGATTTATTACGTCCGTA
AA----------GTATNNCCAGGNTGATACTTTTCAAGAATNTTTTAAGGTATTATTAAT
TCGTGATGAAGAAAGTTTACGAAAGGTGATATTAACCAAGNNCTTTCCAGGTGGTAAAAA
TCATCAAGAGAAAACCTGTTTTATGAAGGGTGATATCCAANCAAGACTTATTACGTCGTA
AAAAATTCTTGATAAACNTGATTCAAAACAAGTATATCCAGGTGATGTTATTCAAGATAT
TTTACGTGTTATTAATCGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTT
ATTACATCGTAATAACAAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACA
AGATTTATTACGTCGTAATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATAT
TATTCAAGATATTTTACGTGTTTTAAATCATGAAGAGAAAGAAGTTTACGAAGGTGATAT
TAAACAAAATTTGTTGCGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGG
TGATATTAAACAAGATTTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTA
TGAAGGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACA
AGTATATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGA
AGTAAATGAGGATGAAATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGA
AGAGGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGC
ATTTGTTGAACAACATCCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAGACA
ATAAATTACTATCAATAAAAATAATTATT
Length of connected seq. 1639
Full length Seq ID -
Full length Seq. -
Length of full length seq. -