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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR176
Library CH
(Link to library)
Clone ID CHR176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CHR176P
(Link to Original site)
Representative DNA sequence 
>CHR176 (CHR176Q) /CSM/CH/CHR1-D/CHR176Q.Seq.d/
CTGTTGGCCTATTGGTAATAATTATNCCCTTAAAATAATAACAATAAAATAGATTTTTAC
ATTTATTTTTATTTATTTCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAA
AAGAAAAAAAAAAXXXXXXXXXXGTCTTACAATGGTTTTAAATTGTGATGATAATAACGA
TTGTACTGAAGATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTG
TGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATC
ACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGA
AATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGG
TACAACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTT
ATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGA
ATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGG
TGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTA
TGGTGAATCATGTTGTA
sequence update 2002.10.25
Translated Amino Acid sequence 
llayw**lxp*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKKKKK---

---LTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECD
CCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYH
CKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCC
Translated Amino Acid sequence (All Frames) 
Frame A:
llayw**lxp*NNNNKIDFYIYFYLFHIYFCWKKKKKKKKKKKK---

---vlqwf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsv
ivvqlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidi
ivkeewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhv
v

Frame B:
cwpignnyxlkiitik*iftfifiyfififvgkkrkkrkkrkkk---

---syngfkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*
llsnwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**is
l*krngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml

Frame C:
vgllviixplk**q*nrflhlflfisylfllekkekkekkekk---

---LTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECD
CCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYH
CKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCC
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                       1059   0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/                       1059   0.0
SHK847 (SHK847Q) /CSM/SH/SHK8-B/SHK847Q.Seq.d/                       1059   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                       1059   0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/                       1059   0.0
SHJ837 (SHJ837Q) /CSM/SH/SHJ8-B/SHJ837Q.Seq.d/                       1059   0.0
SHJ748 (SHJ748Q) /CSM/SH/SHJ7-B/SHJ748Q.Seq.d/                       1059   0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/                       1059   0.0
SHJ548 (SHJ548Q) /CSM/SH/SHJ5-B/SHJ548Q.Seq.d/                       1059   0.0
SHJ540 (SHJ540Q) /CSM/SH/SHJ5-B/SHJ540Q.Seq.d/                       1059   0.0
own update 2004. 5.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    42   0.16   5
CR385071|CR385071.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-245B7.    48   0.24   1
CR936281|CR936281.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48   0.24   1
AC149417|AC149417.1 Phakopsora pachyrhizi clone JGIAFNA-77J13, complete sequence.    46   0.94   1
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   0.94   1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   1.4    3
BX548047|BX548047.12 Zebrafish DNA sequence from clone CH211-77G15 in linkage group 2.    32   1.8    2
CR925748|CR925748.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-142K17.    32   1.8    2
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   1.9    2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.7    1
dna update 2005.11.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                327   1e-88
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                189   5e-47
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   2e-05
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    41   0.027
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    41   0.035
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    41   0.035
AL773562_2(AL773562|pid:none) Pig DNA sequence from clone PigI-6...    40   0.060
BX883044_5(BX883044|pid:none) Rattus norvegicus chromosome 20, m...    39   0.13
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    38   0.23
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    38   0.23
protein update 2009. 4.12
PSORT 

 psg: 0.91  gvh: 0.26  alm: 0.47  top: 0.43  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHR176 is nuc
5' end seq. ID CHR176F
5' end seq. 
>CHR176F.Seq
CTGTTGGCCTATTGGTAATAATTATNCCCTTAAAATAATAACAATAAAATAGATTTTTAC
ATTTATTTTTATTTATTTCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAA
AAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 143
3' end seq. ID CHR176Z
3' end seq. 
>CHR176Z.Seq
NNNNNNNNNNGTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGAT
AAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCA
CCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGT
GATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAA
CCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGC
AGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATAT
CATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCA
AACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGT
TTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGT
TGTA
Length of 3' end seq. 544
Connected seq. ID CHR176P
Connected seq. 
>CHR176P.Seq
CTGTTGGCCTATTGGTAATAATTATNCCCTTAAAATAATAACAATAAAATAGATTTTTAC
ATTTATTTTTATTTATTTCATATTTATTTTTGTTGGAAAAAAAAGAAAAAAAAGAAAAAA
AAGAAAAAAAAAA----------GTCTTACAATGGTTTTAAATTGTGATGATAATAACGA
TTGTACTGAAGATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTG
TGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATC
ACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGA
AATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGG
TACAACAACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTT
ATGTGATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGA
ATGTTTACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGG
TGATTTCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTA
TGGTGAATCATGTTGTA
Length of connected seq. 667
Full length Seq ID -
Full length Seq. -
Length of full length seq. -