>CHR168 (CHR168Q) /CSM/CH/CHR1-C/CHR168Q.Seq.d/
ACTGTTGGCCTACTGTTTATTTTTTTTTATTTTTTTTATTTTTTTTAAAAATTTTAAATA
AAAATATTAACAAATATTATTTAATTTATTTATTTTTTATATATATATAAAATATAGATT
TATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAAAAAAXXXXXXXXXXTCTTCACAAGT
TGTAAATTTCCCTTGTATCGTATTGAATACCATTGTTGCTGAATCATTACGTTTCATTCG
TGAAGAGATTCTCAGAGAGATGAAAGTTAGTAGTAGACAAACTGCATTCAATAAAATCAT
TAAAGATACATTGATTCAACATGTTCGTGTTGTTTTCAATGGTGATGGTTATAGTGGTGA
TTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCATCGACTCCAGAGGCTTT
AACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTCTGAAAGTAATATTCTCTCACC
AGTTGAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAATCAATTAAAAT
CGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGTACTTCCAGCTTGTTTTGCTCA
TCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAAGTCAAAAATC
TTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGAAGTCGTTGAATCTGTCAATCT
CTTAATTGAAGCTAATCAAAAACTTTTGACTCTCATTAAACAAACTAAAGATTTCAATTC
TGAACATTCACTCGCAACTTTCCTCAATCAATCTGTAATTCCACAAATGAATGAAGTTCG
TAAATTTTAAAAATCANAAAAAANGTATTGT

cwptvyfflfflfflkilnkninkyyliylffiyi*NIDLFFFKKKKKKKKK---

---SSQVVNFPCIVLNTIVAESLRFIREEILREMKVSSRQTAFNKIIKDTLIQHVRVVFN
GDGYSGDWKELAKSRGLANLPSTPEALTNINSEKNIKLFSESNILSPVELESRQEILFEI
YNKSIKIEANSLYDLVSTLVLPACFAHQKNIAESVNSIMPFIQSQKSFSQPNHQYSHLSE
VVESVNLLIEANQKLLTLIKQTKDFNSEHSLATFLNQSVIPQMNEVRKF*ksxkxyc

Frame A:
tvgllfiffyffyff*kf*ikiltnii*fiyflyiyki*iyfflkrkrrkrkk---

---SSQVVNFPCIVLNTIVAESLRFIREEILREMKVSSRQTAFNKIIKDTLIQHVRVVFN
GDGYSGDWKELAKSRGLANLPSTPEALTNINSEKNIKLFSESNILSPVELESRQEILFEI
YNKSIKIEANSLYDLVSTLVLPACFAHQKNIAESVNSIMPFIQSQKSFSQPNHQYSHLSE
VVESVNLLIEANQKLLTLIKQTKDFNSEHSLATFLNQSVIPQMNEVRKF*ksxkxyc

Frame B:
llayclfffiffiffknfk*ky*qilfnlfifyiyikyrfiff*kekeekek---

---lhkl*islvsy*iplllnhyvsfvkrfser*klvvdklhsikslkih*fnmfvlfsm
vmvivvigknspnlev*qiyhrlqrl*qiltlkrilnsflkvifshqlnwnhvkrfslkf
iinqlkskqtlymi*fqlwyfqlvllikrillnl*tl*chsfkvknlsvnqiinilislk
slnlsis*lkliknf*lslnklkisilnihsqlssinl*fhk*mkfvnfknxkkxi

Frame C:
cwptvyfflfflfflkilnkninkyyliylffiyi*NIDLFFFKKKKKKKKK---

---ftsckfplyrieyhcc*iitfhs*rdsqrdes***tnciq*nh*ryidstcsccfqw
*wl*w*lertrqi*rfskftidsrgfnky*l*key*tlf*k*yslts*igitsrdsl*nl
**in*nrsklfi*fsfnfgtsslfcsskeyc*icklynaihskskifqstkssifssl*s
r*icqsln*s*sktfdsh*tn*rfqf*tftrnfpqsicnstne*ss*ilkixkxvl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR168 (CHR168Q) /CSM/CH/CHR1-C/CHR168Q.Seq.d/                       1380   0.0
CHQ709 (CHQ709Q) /CSM/CH/CHQ7-A/CHQ709Q.Seq.d/                       1350   0.0
CHQ879 (CHQ879Q) /CSM/CH/CHQ8-D/CHQ879Q.Seq.d/                       1348   0.0
SHJ542 (SHJ542Q) /CSM/SH/SHJ5-B/SHJ542Q.Seq.d/                       1342   0.0
CHM738 (CHM738Q) /CSM/CH/CHM7-B/CHM738Q.Seq.d/                       1342   0.0
AHM789 (AHM789Q) /CSM/AH/AHM7-D/AHM789Q.Seq.d/                       1342   0.0
CHR354 (CHR354Q) /CSM/CH/CHR3-C/CHR354Q.Seq.d/                       1340   0.0
AHN434 (AHN434Q) /CSM/AH/AHN4-B/AHN434Q.Seq.d/                       1340   0.0
SHA796 (SHA796Q) /CSM/SH/SHA7-D/SHA796Q.Seq.d/                       1338   0.0
CHQ559 (CHQ559Q) /CSM/CH/CHQ5-C/CHQ559Q.Seq.d/                       1338   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.046  2
BB222082|BB222082.1 Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530073L17, 3' end partial sequence.    34   0.88   2
AC098759|AC098759.5 Rattus norvegicus clone CH230-167F9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40   1.1    7
CT333556|CT333556.1 Sus scrofa genomic clone CH242-389K11, genomic survey sequence.    46   1.2    1
AJ231860|AJ231860.1 Gallus gallus anonymous sequence from Cosmid mapping to a  microchromosome (Cosmid 21 - Contig 18).    40   1.6    2
AX345695|AX345695.1 Sequence 766 from Patent WO0200928.            36   2.3    3
AC149663|AC149663.3 Bos taurus clone CH240-65H8, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces.    32   2.3    2
B50795|B50795.1 CIT-HSP-758A21.TV CIT-HSP Homo sapiens genomic clone 758A21, genomic survey sequence.    34   3.2    2
CJ469742|CJ469742.1 Macaca fascicularis mRNA, clone: QnpA-21002, 5' end, expressed in brain parietal lobe.    36   3.5    2
AC007178|AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.    44   4.1    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase;          EC=...   435   e-121
CP000359_1193(CP000359|pid:none) Deinococcus geothermalis DSM 11...   119   1e-25
CT573071_568(CT573071|pid:none) Kuenenia stuttgartiensis genome ...   117   6e-25
CP000885_3336(CP000885|pid:none) Clostridium phytofermentans ISD...   115   2e-24
CP000951_239(CP000951|pid:none) Synechococcus sp. PCC 7002, comp...   115   2e-24
CP001101_909(CP001101|pid:none) Chlorobium phaeobacteroides BS1,...   115   2e-24
CP000568_1524(CP000568|pid:none) Clostridium thermocellum ATCC 2...   115   2e-24
AE017285_1252(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...   113   7e-24
BA000022_1934(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,...   112   2e-23
CP001124_3048(CP001124|pid:none) Geobacter bemidjiensis Bem, com...   111   3e-23

 psg: 0.27  gvh: 0.42  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for CHR168 is nuc

>CHR168F.Seq
ACTGTTGGCCTACTGTTTATTTTTTTTTATTTTTTTTATTTTTTTTAAAAATTTTAAATA
AAAATATTAACAAATATTATTTAATTTATTTATTTTTTATATATATATAAAATATAGATT
TATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAAAAAANNNNNNNNNN

>CHR168Z.Seq
NNNNNNNNNNTCTTCACAAGTTGTAAATTTCCCTTGTATCGTATTGAATACCATTGTTGC
TGAATCATTACGTTTCATTCGTGAAGAGATTCTCAGAGAGATGAAAGTTAGTAGTAGACA
AACTGCATTCAATAAAATCATTAAAGATACATTGATTCAACATGTTCGTGTTGTTTTCAA
TGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTT
ACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTC
TGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCTTTGAAAT
TTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGT
ACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCC
ATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGA
AGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTTTGACTCTCATTAA
ACAAACTAAAGATTTCAATTCTGAACATTCACTCGCAACTTTCCTCAATCAATCTGTAAT
TCCACAAATGAATGAAGTTCGTAAATTTTAAAAATCANAAAAAANGTATTGT

>CHR168P.Seq
ACTGTTGGCCTACTGTTTATTTTTTTTTATTTTTTTTATTTTTTTTAAAAATTTTAAATA
AAAATATTAACAAATATTATTTAATTTATTTATTTTTTATATATATATAAAATATAGATT
TATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAAAAAA----------TCTTCACAAGT
TGTAAATTTCCCTTGTATCGTATTGAATACCATTGTTGCTGAATCATTACGTTTCATTCG
TGAAGAGATTCTCAGAGAGATGAAAGTTAGTAGTAGACAAACTGCATTCAATAAAATCAT
TAAAGATACATTGATTCAACATGTTCGTGTTGTTTTCAATGGTGATGGTTATAGTGGTGA
TTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCATCGACTCCAGAGGCTTT
AACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTCTGAAAGTAATATTCTCTCACC
AGTTGAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAATCAATTAAAAT
CGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGTACTTCCAGCTTGTTTTGCTCA
TCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAAGTCAAAAATC
TTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGAAGTCGTTGAATCTGTCAATCT
CTTAATTGAAGCTAATCAAAAACTTTTGACTCTCATTAAACAAACTAAAGATTTCAATTC
TGAACATTCACTCGCAACTTTCCTCAATCAATCTGTAATTCCACAAATGAATGAAGTTCG
TAAATTTTAAAAATCANAAAAAANGTATTGT