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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR167
Library CH
(Link to library)
Clone ID CHR167
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11934-1
Original site URL
Representative seq. ID CHR167P
(Link to Original site)
Representative DNA sequence 
>CHR167 (CHR167Q) /CSM/CH/CHR1-C/CHR167Q.Seq.d/
CAACAAAAAATTTTATACATATAAAGGAATAAGAATTCTTCCTTCCTTCTTTCCCTTAAA
TTAGTTTTTCTTTTTATTTTTATTTTATAAATTTTTTTTTTTTTACATTXXXXXXXXXXA
NTATTGAAAGAANCAATCACAAAATCAATTAATCAATTAAAATATTTTCAACCACAACAA
TCTTCATTATCCTCTTCTTTTGGTATTAGCACAAGTAATAATAATAATCCTGTCTTTCAA
GAANTATTGGGTAATAGTGTTCAAATGATTCANAGTGTAATGTTACATNTCNTTNAAANG
AAACCAATTGGTCGTCCTCATGTNTATGCTANAGAGGTAATTGGAGTTTAGTTAGGAATC
AA
sequence update 2002.10.25
Translated Amino Acid sequence 
tknfihike*efflpsfp*ISFSFYFYFINFFFFT---

---XLKEXITKSINQLKYFQPQQSSLSSSFGISTSNNNNPVFQEXLGNSVQMIXSVMLHX
XXXKPIGRPHVYAXEVIGV*lgi
Translated Amino Acid sequence (All Frames) 
Frame A:
qqkilyi*rnknssfllslklvflfifil*iffflh---

---xierxnhkin*sikifstttifiilffwy*hk****sclsrxig**csndsxcnvtx
xxxetnwssscxcxrgnwslvrnq

Frame B:
nkkfytykgirilpsffpln*ffflflfykffffyi---

---XLKEXITKSINQLKYFQPQQSSLSSSFGISTSNNNNPVFQEXLGNSVQMIXSVMLHX
XXXKPIGRPHVYAXEVIGV*lgi

Frame C:
tknfihike*efflpsfp*ISFSFYFYFINFFFFT---

---y*kxqsqnqlin*nifnhnnlhyplllvlaqviiiilsfkxywvivfk*fxv*cyxs
xkxnqlvvlmxmlxr*lefs*es
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR167 (CHR167Q) /CSM/CH/CHR1-C/CHR167Q.Seq.d/                        424   e-118
SFJ877 (SFJ877Q) /CSM/SF/SFJ8-D/SFJ877Q.Seq.d/                        404   e-112
VFD319 (VFD319Q) /CSM/VF/VFD3-A/VFD319Q.Seq.d/                         38   0.088
SSM815 (SSM815Q) /CSM/SS/SSM8-A/SSM815Q.Seq.d/                         38   0.088
SSA162 (SSA162Q) /CSM/SS/SSA1-C/SSA162Q.Seq.d/                         38   0.088
SLC509 (SLC509Q) /CSM/SL/SLC5-A/SLC509Q.Seq.d/                         38   0.088
SFJ480 (SFJ480Q) /CSM/SF/SFJ4-D/SFJ480Q.Seq.d/                         38   0.088
FCL-AD15 (FCL-AD15Q) /CSM/FCL/FCL-AD/FCL-AD15Q.Seq.d/                  38   0.088
AFM171 (AFM171Q) /CSM/AF/AFM1-C/AFM171Q.Seq.d/                         38   0.088
VSC851 (VSC851Q) /CSM/VS/VSC8-C/VSC851Q.Seq.d/                         36   0.35
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC084688|AC084688.2 Homo sapiens chromosome 1 clone RP11-25F12 map 1, WORKING DRAFTSEQUENCE, 41 unordered pieces.    40   0.011  3
AC147589|AC147589.3 Atelerix albiventris clone LB4-422F21, WORKING DRAFT SEQUENCE, 13 ordered pieces.    38   0.013  4
CR388221|CR388221.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46   0.064  5
AL512284|AL512284.20 Human DNA sequence from clone RP11-248M22 on chromosome 10.    40   0.076  2
BX569791|BX569791.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-185K16.    36   0.12   4
BX248089|BX248089.5 Zebrafish DNA sequence from clone DKEY-21K10 in linkage group 20.    36   0.12   4
AP005626|AP005626.2 Homo sapiens genomic DNA, chromosome 8q24, clone: KB51H10, complete sequence.    44   0.19   2
BX323866|BX323866.5 Zebrafish DNA sequence from clone CH211-278M12 in linkage group 13.    42   0.26   3
AL355486|AL355486.14 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-164I18.    40   0.35   2
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    42   0.39   4
dna update 2005.11.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 297,971,663
protein update 2009. 4.12
PSORT 

 psg: 0.94  gvh: 0.41  alm: 0.40  top: 0.60  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHR167 is cyt
5' end seq. ID CHR167F
5' end seq. 
>CHR167F.Seq
CAACAAAAAATTTTATACATATAAAGGAATAAGAATTCTTCCTTCCTTCTTTCCCTTAAA
TTAGTTTTTCTTTTTATTTTTATTTTATAAATTTTTTTTTTTTTACATTNNNNNNNNNN
Length of 5' end seq. 119
3' end seq. ID CHR167Z
3' end seq. 
>CHR167Z.Seq
NNNNNNNNNNANTATTGAAAGAANCAATCACAAAATCAATTAATCAATTAAAATATTTTC
AACCACAACAATCTTCATTATCCTCTTCTTTTGGTATTAGCACAAGTAATAATAATAATC
CTGTCTTTCAAGAANTATTGGGTAATAGTGTTCAAATGATTCANAGTGTAATGTTACATN
TCNTTNAAANGAAACCAATTGGTCGTCCTCATGTNTATGCTANAGAGGTAATTGGAGTTT
AGTTAGGAATCAA
Length of 3' end seq. 253
Connected seq. ID CHR167P
Connected seq. 
>CHR167P.Seq
CAACAAAAAATTTTATACATATAAAGGAATAAGAATTCTTCCTTCCTTCTTTCCCTTAAA
TTAGTTTTTCTTTTTATTTTTATTTTATAAATTTTTTTTTTTTTACATT----------A
NTATTGAAAGAANCAATCACAAAATCAATTAATCAATTAAAATATTTTCAACCACAACAA
TCTTCATTATCCTCTTCTTTTGGTATTAGCACAAGTAATAATAATAATCCTGTCTTTCAA
GAANTATTGGGTAATAGTGTTCAAATGATTCANAGTGTAATGTTACATNTCNTTNAAANG
AAACCAATTGGTCGTCCTCATGTNTATGCTANAGAGGTAATTGGAGTTTAGTTAGGAATC
AA
Length of connected seq. 352
Full length Seq ID -
Full length Seq. -
Length of full length seq. -