>CHR164 (CHR164Q) /CSM/CH/CHR1-C/CHR164Q.Seq.d/
XXXXXXXXXXTAGATACGAAAAAGNCAATGAGGTATATCAACATCAACCAACTGAAGAAA
ACTCACTCTTATACTCAACATCAATCATTTCAAGAATTGTGGAAATGGAAGTAACTGATC
TTTTATCAGTGGTTCTTAAAAATTTAACTCAACAAGGTTGTTCATTAGCACGTGAAGCCG
TTGATGAGAGATCTTTGTTAAGTACAATTCATTCGGATAAATACTATAATAGTTCAATTG
TGGTATTACATAATTATTGGCCAATTCCACCAAAGTTTTGTGATTGTTCAACATCATTTA
TTTCAATGGCCAATGGTAAATTGCCTAGAACCTATTCTGGTAGCGATGGTGTTATACCTT
ATATATTTTTCGCTAGAAATCATTTAACACTTGGATTCTTACTATCAATTCATAATAATA
TCACCGATACCATTGATATTAATCATTGGATTTCCGTTGCGATATCTGGTGGACTTTATT
ATGACAAAGAGGAAATCTTTAGGAAATATCCATTACTTCAAAAAGAATCTACACTTCAAA
AATATCCAAGACCAGTTAATATTTTAGAATTTCAAACTTTATTAGAAAATAATGAGTGTA
TCGAATATATCGCCAGAACTTTCATTAAAGAAATTCCACCTCATGAAGTACCAACTGTTA
AACATTCA

---RYEKXNEVYQHQPTEENSLLYSTSIISRIVEMEVTDLLSVVLKNLTQQGCSLAREAV
DERSLLSTIHSDKYYNSSIVVLHNYWPIPPKFCDCSTSFISMANGKLPRTYSGSDGVIPY
IFFARNHLTLGFLLSIHNNITDTIDINHWISVAISGGLYYDKEEIFRKYPLLQKESTLQK
YPRPVNILEFQTLLENNECIEYIARTFIKEIPPHEVPTVKHS

Frame A:
---RYEKXNEVYQHQPTEENSLLYSTSIISRIVEMEVTDLLSVVLKNLTQQGCSLAREAV
DERSLLSTIHSDKYYNSSIVVLHNYWPIPPKFCDCSTSFISMANGKLPRTYSGSDGVIPY
IFFARNHLTLGFLLSIHNNITDTIDINHWISVAISGGLYYDKEEIFRKYPLLQKESTLQK
YPRPVNILEFQTLLENNECIEYIARTFIKEIPPHEVPTVKHS


Frame B:
---dtkkxmryininqlkkthsytqhqsfqelwkwk*lifyqwflki*lnkvvh*hvkpl
mrdlc*vqfirintiivqlwyyiiigqfhqsfvivqhhlfqwpmvnclepilvamvlyli
yfsleii*hldsyyqfiiispipliliigfplrylvdfimtkrkslgnihyfkknlhfkn
iqdqlif*nfkly*kimsvsnispelslkkfhlmkyqllni


Frame C:
---irkxq*giststn*rkltlilninhfkncgngsn*sfisgs*kfnstrlfist*sr*
*eifvkynsfg*il**fncgit*llanstkvl*lfniiyfngqw*ia*nlfw*rwcytly
ifr*ksfntwiltins**yhryh*y*sldfrcdiwwtll*qrgnl*eisitskriytski
skts*yfrisnfirk**vyriyrqnfh*rnsts*stnc*tf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR164 (CHR164Q) /CSM/CH/CHR1-C/CHR164Q.Seq.d/                       1298   0.0
VHD808 (VHD808Q) /CSM/VH/VHD8-A/VHD808Q.Seq.d/                       1039   0.0
SSG506 (SSG506Q) /CSM/SS/SSG5-A/SSG506Q.Seq.d/                         40   0.042
VHQ215 (VHQ215Q) /CSM/VH/VHQ2-A/VHQ215Q.Seq.d/                         38   0.17
VFE784 (VFE784Q) /CSM/VF/VFE7-D/VFE784Q.Seq.d/                         38   0.17
SLA733 (SLA733Q) /CSM/SL/SLA7-B/SLA733Q.Seq.d/                         38   0.17
SFF550 (SFF550Q) /CSM/SF/SFF5-C/SFF550Q.Seq.d/                         38   0.17
SFE360 (SFE360Q) /CSM/SF/SFE3-C/SFE360Q.Seq.d/                         38   0.17
SFD635 (SFD635Q) /CSM/SF/SFD6-B/SFD635Q.Seq.d/                         38   0.17
CHD581 (CHD581Q) /CSM/CH/CHD5-D/CHD581Q.Seq.d/                         38   0.17

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.  1298   0.0    1
AC026896|AC026896.2 Homo sapiens chromosome 7 clone RP11-546P19 map 7, WORKING DRAFT SEQUENCE, 34 unordered pieces.    46   0.93   1
AC162113|AC162113.2 Bos taurus clone CH240-25H6, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    46   0.93   1
AY212287|AY212287.1 Escherichia coli plasmid p3605 truncated PerA (perA) gene, complete cds.    46   0.93   1
AP005205|AP005205.3 Homo sapiens genomic DNA, chromosome 18 clone:RP11-91I8, complete sequence.    46   0.93   1
AL442163|AL442163.5 Human chromosome 14 DNA sequence BAC R-90P16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human).    46   0.93   1
AC161276|AC161276.2 Pan troglodytes BAC clone CH251-520C21 from chromosome 7, complete sequence.    38   1.2    6
AL138702|AL138702.8 Human DNA sequence from clone RP11-407E23 on chromosome 13. Contains GSSs, ESTs and STSs.    44   1.3    3
AE011474|AE011474.1 Leptospira interrogans serovar lai str. 56601 chromosome I, section 283 of 397 of the complete sequence.    44   1.5    2
AC162511|AC162511.3 Bos taurus clone CH240-113F1, *** SEQUENCING IN PROGRESS ***, 45 unordered pieces.    32   1.7    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q559A2) RecName: Full=Probable serine/threonine-protein kinase ...   412   e-114
(Q55DJ9) RecName: Full=Probable serine/threonine-protein kinase ...    94   3e-18
CP001393_1339(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    34   3.3
CP000679_1874(CP000679|pid:none) Caldicellulosiruptor saccharoly...    33   7.4
(A6ZQE9) RecName: Full=Alpha-1,2-mannosyltransferase MNN5;      ...    33   9.7

 psg: 0.58  gvh: 0.48  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHR164 is cyt

>CHR164Z.Seq
NNNNNNNNNNTAGATACGAAAAAGNCAATGAGGTATATCAACATCAACCAACTGAAGAAA
ACTCACTCTTATACTCAACATCAATCATTTCAAGAATTGTGGAAATGGAAGTAACTGATC
TTTTATCAGTGGTTCTTAAAAATTTAACTCAACAAGGTTGTTCATTAGCACGTGAAGCCG
TTGATGAGAGATCTTTGTTAAGTACAATTCATTCGGATAAATACTATAATAGTTCAATTG
TGGTATTACATAATTATTGGCCAATTCCACCAAAGTTTTGTGATTGTTCAACATCATTTA
TTTCAATGGCCAATGGTAAATTGCCTAGAACCTATTCTGGTAGCGATGGTGTTATACCTT
ATATATTTTTCGCTAGAAATCATTTAACACTTGGATTCTTACTATCAATTCATAATAATA
TCACCGATACCATTGATATTAATCATTGGATTTCCGTTGCGATATCTGGTGGACTTTATT
ATGACAAAGAGGAAATCTTTAGGAAATATCCATTACTTCAAAAAGAATCTACACTTCAAA
AATATCCAAGACCAGTTAATATTTTAGAATTTCAAACTTTATTAGAAAATAATGAGTGTA
TCGAATATATCGCCAGAACTTTCATTAAAGAAATTCCACCTCATGAAGTACCAACTGTTA
AACATTCA