CHR162
Library CH
(Link to library)
Clone ID CHR162
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11768-1
Original site URL
Representative seq. ID CHR162P
(Link to Original site)
Representative DNA sequence
>CHR162 (CHR162Q) /CSM/CH/CHR1-C/CHR162Q.Seq.d/
ACACTTAATAATAAATAATTAAAAATATCATATAAATAAAATCTTATAAAAATATGTCTT
TATCAAAATTATCACTATCATCAAAAGCATTATCAAATCCTCAAAATTCTAAATTATGTT
TAAATGGATTTAAAAGTTTAATATTAAAGAATATTATATCACCATCATCATCTTATAAAA
GTAGAAATTATACAAGTGGTTTAAATATTCGCCAATATAATAATAAATCAATTTATAATA
ATGAATTTAAAAATATAATTAAAAATAACAATATCACCAATAATCAATCTAATCCATTAA
ATATATCTTCATTTTCAAATAATTTATTAAATAGTAATACATCAATTTCAACAACAAATA
CATCATCTTTATCAAATATTAGAACATATGCAACTGCAAGAGAGAAAGTTCTTTCAAATG
CTGATTCATTACCAAATGATGAAAATATTCAAGAGATGGCATATAAAGAATTAATTGAAA
TGGGTGATTATGATACTATTGTAAAAAGATTTGAAAGTTTAGCATTTTCATCAAATGAAG
AATGTGTAAGATATTATTTTAAAGCATTAGTATATAGTGGTAAAATTAATAAAGCAAATT
TAGGAATGACAAAATTACCACCACCAACTAAAAAAATGACAAAAGCAGCAAGGGAAXXXX
XXXXXXCGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAGAGA
TGATATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACGTAA
CACTGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGACCC
AATTCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATTGCC
AGAGATGGATCATGTCCAATATACTCGTAAACAAATGATGGCTCGTCTTGCAATTTGTTT
GGCTGGTCGTGCCGCTGAAGAAATCTTTTTCGGTGTCGATGGTGTTACAAGCGGTGCATC
ATCCGATTTCCAACAAGCTTCTTCTTTGGCTTTCTCTATGATTACCAAATGGGGTATGTC
CGATAAAGTTGGTTTCATCTATCATAAAGATAAAACTTCACCAGAGGTTCAAAAGATCAT
CGAAGATGAAGTTAAAGATCTTTTAGATAAACAATATCAATACTCTAAAGAATTAATCAT
TAAAAATAGAGATAACATGGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTTTAAC
TGGTGAAGAAATTTTAAAGATTTTAAATCCAAAAGTAACTTTACCAATTCAAAATAATAA
TAATAATAATAATATTTCTGTTCCATCTTCACCATCTTCATCATCTGGAAATTCATTATT
ACCATTACCTGTACCATCATCTTCTTCACCAATTGCAA
sequence update 2002.10.25
Translated Amino Acid sequence
t***iiknii*IKSYKNMSLSKLSLSSKALSNPQNSKLCLNGFKSLILKNIISPSSSYKS
RNYTSGLNIRQYNNKSIYNNEFKNIIKNNNITNNQSNPLNISSFSNNLLNSNTSISTTNT
SSLSNIRTYATAREKVLSNADSLPNDENIQEMAYKELIEMGDYDTIVKRFESLAFSSNEE
CVRYYFKALVYSGKINKANLGMTKLPPPTKKMTKAARE---

---VQNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVAAMTEAAD
PIHKATIVQRGQALGMVSQLPEMDHVQYTRKQMMARLAICLAGRAAEEIFFGVDGVTSGA
SSDFQQASSLAFSMITKWGMSDKVGFIYHKDKTSPEVQKIIEDEVKDLLDKQYQYSKELI
IKNRDNMEKLVGQLLEKETLTGEEILKILNPKVTLPIQNNNNNNNISVPSSPSSSSGNSL
LPLPVPSSSSPIA


Translated Amino Acid sequence (All Frames)
Frame A:
tlnnk*lkisyk*nlikiclyqnyhyhqkhyqilkilnyv*mdlkv*y*rilyhhhhlik
veiiqvv*ifaniiinqfiimnlki*lkitispiinlih*iylhfqiiy*ivihqfqqqi
hhlyqilehmqlqerkffqmlihyqmmkifkrwhikn*lkwvimill*kdlkv*hfhqmk
nv*diilkh*yivvklikqi*e*qnyhhqlkk*qkqqg---

---rskw*rnh*yqtnr*ckr*yfngscsfeccne*rskt*hcls*swscfgssnd*srr
pns*shyrskrssfrygftiardgscpiys*tndgsscnlfgwscr*rnlfrcrwcykrc
iirfptsfffgflydyqmgyvr*swfhls*r*nftrgskdhrr*s*rsfr*tisil*rin
h*k*r*hgeisrpiigernfnw*rnfkdfksksnftnsk******yfcsiftifiiwkfi
ititctiifftnc

Frame B:
hliinn*kyhinkil*kyvfikiitiiksiiksskf*imfkwi*kfnikeyyitiiil*k
*klykwfkyspi***inl***i*kyn*k*qyhq*si*sikyififk*fik**yinfnnky
iifiky*nicnckressfkc*fitk**kysrdgi*rin*ng*l*yyckki*kfsifik*r
mckilf*sisi*w*n**skfrndkitttn*kndksskg---

---VQNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVAAMTEAAD
PIHKATIVQRGQALGMVSQLPEMDHVQYTRKQMMARLAICLAGRAAEEIFFGVDGVTSGA
SSDFQQASSLAFSMITKWGMSDKVGFIYHKDKTSPEVQKIIEDEVKDLLDKQYQYSKELI
IKNRDNMEKLVGQLLEKETLTGEEILKILNPKVTLPIQNNNNNNNISVPSSPSSSSGNSL
LPLPVPSSSSPIA

Frame C:
t***iiknii*IKSYKNMSLSKLSLSSKALSNPQNSKLCLNGFKSLILKNIISPSSSYKS
RNYTSGLNIRQYNNKSIYNNEFKNIIKNNNITNNQSNPLNISSFSNNLLNSNTSISTTNT
SSLSNIRTYATAREKVLSNADSLPNDENIQEMAYKELIEMGDYDTIVKRFESLAFSSNEE
CVRYYFKALVYSGKINKANLGMTKLPPPTKKMTKAARE---

---fkmvkkplvsnksmmqemif*wvvlv*ml**vkkqdvtlpimklvmlw*qq*lkppt
qfikplsfkevkl*vwfhncqrwimsnilvnk*wlvlqfvwlvvplkksfsvsmvlqavh
hpisnklllwlsl*lpngvcpiklvssiikiklhqrfkrsskmklkif*innintlkn*s
lkieitwrn*sanywrkkl*lvkkf*rf*iqk*lyqfkiiiiiiiflfhlhhlhhleihy
yhylyhhllhqlq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR162 (CHR162Q) /CSM/CH/CHR1-C/CHR162Q.Seq.d/ 1929 0.0
CHI518 (CHI518Q) /CSM/CH/CHI5-A/CHI518Q.Seq.d/ 1279 0.0
AFN304 (AFN304Q) /CSM/AF/AFN3-A/AFN304Q.Seq.d/ 1279 0.0
VHN314 (VHN314Q) /CSM/VH/VHN3-A/VHN314Q.Seq.d/ 1273 0.0
CHO268 (CHO268Q) /CSM/CH/CHO2-C/CHO268Q.Seq.d/ 1098 0.0
CHH639 (CHH639Q) /CSM/CH/CHH6-B/CHH639Q.Seq.d/ 1005 0.0
SSI556 (SSI556Q) /CSM/SS/SSI5-C/SSI556Q.Seq.d/ 704 0.0
VSA860 (VSA860Q) /CSM/VS/VSA8-C/VSA860Q.Seq.d/ 678 0.0
SSA716 (SSA716Q) /CSM/SS/SSA7-A/SSA716Q.Seq.d/ 504 e-141
SLA125 (SLA125Q) /CSM/SL/SLA1-B/SLA125Q.Seq.d/ 42 0.023

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 3e-05 15
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 38 3e-05 11
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 0.006 15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 42 0.007 14
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 36 0.009 10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.010 16
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 0.013 12
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome. 34 0.016 21
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome. 40 0.023 17
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12 section 7 of 9 of the complete sequence. 42 0.069 9
dna update 2005.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ635223_1(AJ635223|pid:none) Pisum sativum mRNA for ftsH-like p... 206 1e-51
(Q8LQJ8) RecName: Full=Cell division protease ftsH homolog 5, mi... 203 1e-50
AE017196_1130(AE017196|pid:none) Wolbachia endosymbiont of Droso... 201 4e-50
CP000236_1047(CP000236|pid:none) Ehrlichia chaffeensis str. Arka... 201 5e-50
BT063337_1(BT063337|pid:none) Zea mays full-length cDNA clone ZM... 200 1e-49
CR954217_1(CR954217|pid:none) Ostreococcus tauri strain OTTH0595... 199 2e-49
(Q8LQJ9) RecName: Full=Cell division protease ftsH homolog 4, mi... 199 2e-49
CP000596_9(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 c... 198 3e-49
DQ308538_1(DQ308538|pid:none) Triticum monococcum cultivar DV92 ... 198 4e-49
CR767821_870(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 197 7e-49
protein update 2009. 4.12
PSORT

psg: 0.79 gvh: 0.63 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.55 mip: 0.19
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: mitochondrial
20.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: extracellular, including cell wall

>> prediction for CHR162 is mit

5' end seq. ID CHR162F
5' end seq.
>CHR162F.Seq
ACACTTAATAATAAATAATTAAAAATATCATATAAATAAAATCTTATAAAAATATGTCTT
TATCAAAATTATCACTATCATCAAAAGCATTATCAAATCCTCAAAATTCTAAATTATGTT
TAAATGGATTTAAAAGTTTAATATTAAAGAATATTATATCACCATCATCATCTTATAAAA
GTAGAAATTATACAAGTGGTTTAAATATTCGCCAATATAATAATAAATCAATTTATAATA
ATGAATTTAAAAATATAATTAAAAATAACAATATCACCAATAATCAATCTAATCCATTAA
ATATATCTTCATTTTCAAATAATTTATTAAATAGTAATACATCAATTTCAACAACAAATA
CATCATCTTTATCAAATATTAGAACATATGCAACTGCAAGAGAGAAAGTTCTTTCAAATG
CTGATTCATTACCAAATGATGAAAATATTCAAGAGATGGCATATAAAGAATTAATTGAAA
TGGGTGATTATGATACTATTGTAAAAAGATTTGAAAGTTTAGCATTTTCATCAAATGAAG
AATGTGTAAGATATTATTTTAAAGCATTAGTATATAGTGGTAAAATTAATAAAGCAAATT
TAGGAATGACAAAATTACCACCACCAACTAAAAAAATGACAAAAGCAGCAAGGGAANNNN
NNNNNN
Length of 5' end seq. 666
3' end seq. ID CHR162Z
3' end seq.
>CHR162Z.Seq
NNNNNNNNNNCGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAA
GAGATGATATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGAC
GTAACACTGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCG
ACCCAATTCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAAT
TGCCAGAGATGGATCATGTCCAATATACTCGTAAACAAATGATGGCTCGTCTTGCAATTT
GTTTGGCTGGTCGTGCCGCTGAAGAAATCTTTTTCGGTGTCGATGGTGTTACAAGCGGTG
CATCATCCGATTTCCAACAAGCTTCTTCTTTGGCTTTCTCTATGATTACCAAATGGGGTA
TGTCCGATAAAGTTGGTTTCATCTATCATAAAGATAAAACTTCACCAGAGGTTCAAAAGA
TCATCGAAGATGAAGTTAAAGATCTTTTAGATAAACAATATCAATACTCTAAAGAATTAA
TCATTAAAAATAGAGATAACATGGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTT
TAACTGGTGAAGAAATTTTAAAGATTTTAAATCCAAAAGTAACTTTACCAATTCAAAATA
ATAATAATAATAATAATATTTCTGTTCCATCTTCACCATCTTCATCATCTGGAAATTCAT
TATTACCATTACCTGTACCATCATCTTCTTCACCAATTGCAA
Length of 3' end seq. 762
Connected seq. ID CHR162P
Connected seq.
>CHR162P.Seq
ACACTTAATAATAAATAATTAAAAATATCATATAAATAAAATCTTATAAAAATATGTCTT
TATCAAAATTATCACTATCATCAAAAGCATTATCAAATCCTCAAAATTCTAAATTATGTT
TAAATGGATTTAAAAGTTTAATATTAAAGAATATTATATCACCATCATCATCTTATAAAA
GTAGAAATTATACAAGTGGTTTAAATATTCGCCAATATAATAATAAATCAATTTATAATA
ATGAATTTAAAAATATAATTAAAAATAACAATATCACCAATAATCAATCTAATCCATTAA
ATATATCTTCATTTTCAAATAATTTATTAAATAGTAATACATCAATTTCAACAACAAATA
CATCATCTTTATCAAATATTAGAACATATGCAACTGCAAGAGAGAAAGTTCTTTCAAATG
CTGATTCATTACCAAATGATGAAAATATTCAAGAGATGGCATATAAAGAATTAATTGAAA
TGGGTGATTATGATACTATTGTAAAAAGATTTGAAAGTTTAGCATTTTCATCAAATGAAG
AATGTGTAAGATATTATTTTAAAGCATTAGTATATAGTGGTAAAATTAATAAAGCAAATT
TAGGAATGACAAAATTACCACCACCAACTAAAAAAATGACAAAAGCAGCAAGGGAA----
------CGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAGAGA
TGATATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACGTAA
CACTGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGACCC
AATTCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATTGCC
AGAGATGGATCATGTCCAATATACTCGTAAACAAATGATGGCTCGTCTTGCAATTTGTTT
GGCTGGTCGTGCCGCTGAAGAAATCTTTTTCGGTGTCGATGGTGTTACAAGCGGTGCATC
ATCCGATTTCCAACAAGCTTCTTCTTTGGCTTTCTCTATGATTACCAAATGGGGTATGTC
CGATAAAGTTGGTTTCATCTATCATAAAGATAAAACTTCACCAGAGGTTCAAAAGATCAT
CGAAGATGAAGTTAAAGATCTTTTAGATAAACAATATCAATACTCTAAAGAATTAATCAT
TAAAAATAGAGATAACATGGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTTTAAC
TGGTGAAGAAATTTTAAAGATTTTAAATCCAAAAGTAACTTTACCAATTCAAAATAATAA
TAATAATAATAATATTTCTGTTCCATCTTCACCATCTTCATCATCTGGAAATTCATTATT
ACCATTACCTGTACCATCATCTTCTTCACCAATTGCAA
Length of connected seq. 1408
Full length Seq ID -
Full length Seq. -
Length of full length seq. -