>CHR152 (CHR152Q) /CSM/CH/CHR1-C/CHR152Q.Seq.d/
XXXXXXXXXXTTGAAAAAAAATGAGATTATTAGCAGCATTTCTTTTAGTTATTTATGCAG
CACATAATGGAGTATTTGCAAGAGATCATATTGTTTCATTATCAAAAGGTGAAAGTTTTG
AATTAAATATTGAACAAGGTGATAGAATTAATTTCCATGTAAGAGATAATAATAAACATG
TTTTAACCATTCAAGGAGAATCTCAATCATTTGCAAACCTTTCTCCAAAAGATTCTGCCA
AGCAACAATTTAATGAAGCTGGTGAATTCATTGTTACCGATTCAGCTAATATCTATGTCA
ATAAGGTTATAGTAAGTCAAAAACAACAACAAGATCAACAAAAATGGTTTGAAAAGGATG
CTAAAGATCATGCCAACAAAATGGCAGCAACTAAAGATATGGAACAACATGAACATGAGG
ATCTCCAAAATACAAATGATGCTCAAAACAATGAAAATGCTAAACCAAATTCAGCAGCCA
CCAAAGATTCAAATACCGCTAACAATAAAGCTAAACCATCATCAAATGTTAGTGATAACA
AAGAAAACAATGCTTCCAATAAAGCCAAACCATCATCAAATACCAATGATGCCAAACCAA
AGACTGATGAAACTAAAACCAAAGCTGGTTCACCAAAAACTGATGCCAAACCAAAAACTA
CTCAAGATGAATCCCTTGATAGTGCTGATCCAGAAGCA

---*KKMRLLAAFLLVIYAAHNGVFARDHIVSLSKGESFELNIEQGDRINFHVRDNNKHV
LTIQGESQSFANLSPKDSAKQQFNEAGEFIVTDSANIYVNKVIVSQKQQQDQQKWFEKDA
KDHANKMAATKDMEQHEHEDLQNTNDAQNNENAKPNSAATKDSNTANNKAKPSSNVSDNK
ENNASNKAKPSSNTNDAKPKTDETKTKAGSPKTDAKPKTTQDESLDSADPEA

Frame A:
---*KKMRLLAAFLLVIYAAHNGVFARDHIVSLSKGESFELNIEQGDRINFHVRDNNKHV
LTIQGESQSFANLSPKDSAKQQFNEAGEFIVTDSANIYVNKVIVSQKQQQDQQKWFEKDA
KDHANKMAATKDMEQHEHEDLQNTNDAQNNENAKPNSAATKDSNTANNKAKPSSNVSDNK
ENNASNKAKPSSNTNDAKPKTDETKTKAGSPKTDAKPKTTQDESLDSADPEA


Frame B:
---ekk*dy*qhff*lfmqhimeylqeiilfhyqkvkvln*ilnkvielism*eiiinmf
*pfkenlnhlqtflqkilpsnnlmklvnsllpiqlismsirl**vknnnkinknglkrml
kimptkwqqlkiwnnmnmriskiqmmlktmkmlnqiqqppkiqipltiklnhhqmlvitk
ktmlpikpnhhqipmmpnqrlmklkpklvhqklmpnqkllkmnplivliqk


Frame C:
---kkneiissisfsylcst*wsickrsycfiikr*kf*iky*tr**n*fpckr***tcf
nhsrrisiickpfskrfcqati**sw*ihcyrfs*ylcq*gysksktttrstkmv*kgc*
rscqqngsn*rygtt*t*gspkyk*cskq*kc*tkfsshqrfkyr*q*s*tiikc***qr
kqcfq*sqtiikyq*cqtkd**n*nqswftkn*cqtknysr*ip**c*srs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR152 (CHR152Q) /CSM/CH/CHR1-C/CHR152Q.Seq.d/                       1342   0.0
CHE847 (CHE847Q) /CSM/CH/CHE8-B/CHE847Q.Seq.d/                       1342   0.0
CHM463 (CHM463Q) /CSM/CH/CHM4-C/CHM463Q.Seq.d/                       1245   0.0
SSA113 (SSA113Q) /CSM/SS/SSA1-A/SSA113Q.Seq.d/                       1229   0.0
CHP272 (CHP272Q) /CSM/CH/CHP2-C/CHP272Q.Seq.d/                       1229   0.0
SSK138 (SSK138Q) /CSM/SS/SSK1-B/SSK138Q.Seq.d/                       1205   0.0
CHB182 (CHB182Q) /CSM/CH/CHB1-D/CHB182Q.Seq.d/                       1164   0.0
CHD680 (CHD680Q) /CSM/CH/CHD6-D/CHD680Q.Seq.d/                       1160   0.0
CHQ367 (CHQ367Q) /CSM/CH/CHQ3-C/CHQ367Q.Seq.d/                       1142   0.0
CFI381 (CFI381Q) /CSM/CF/CFI3-D/CFI381Q.Seq.d/                       1086   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC108246|AC108246.5 Rattus norvegicus clone CH230-226E23, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    54   0.004  1
CO470522|CO470522.1 SGP170471 Atlantic salmon Eye cDNA library Salmo salar cDNA clone OY4-2010, mRNA sequence.    50   0.062  1
AC102030|AC102030.17 Mus musculus chromosome 5 clone RP23-7J3 map 5, *** SEQUENCING IN PROGRESS ***.    40   0.084  5
BG532176|BG532176.1 602561245F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE:4699115 5', mRNA sequence.    34   0.18   2
AQ540913|AQ540913.1 RPCI-11-324K7.TV RPCI-11 Homo sapiens genomic clone RPCI-11-324K7, genomic survey sequence.    34   0.19   2
DB073364|DB073364.1 Homo sapiens cDNA clone TESTI4016699, 5' end, mRNA sequence.    48   0.25   1
AC079123|AC079123.1 Homo sapiens chromosome 11 clone RP11-507F16, WORKING DRAFT SEQUENCE, 14 unordered pieces.    48   0.25   1
AP003483|AP003483.1 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-61J24, WORKING DRAFT SEQUENCE, 34 unordered pieces.    48   0.25   1
AP000853|AP000853.3 Homo sapiens genomic DNA, chromosome 11q25, clone:RP11-864K12, WORKING DRAFT SEQUENCE, 17 unordered pieces.    48   0.25   1
AC025637|AC025637.2 Homo sapiens chromosome 12 clone RP11-717L19 map 12, WORKING DRAFT SEQUENCE, 26 unordered pieces.    48   0.25   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF163151_1(AF163151|pid:none) Homo sapiens dentin sialophosphopr...    40   0.086
EU278622_1(EU278622|pid:none) Homo sapiens haplotype 1D dentin s...    40   0.086
EU278639_1(EU278639|pid:none) Homo sapiens haplotype 38A dentin ...    40   0.086
EU278636_1(EU278636|pid:none) Homo sapiens haplotype 36A dentin ...    40   0.086
EU284752_1(EU284752|pid:none) Homo sapiens dentin sialophosphopr...    40   0.086
AF094508_1(AF094508|pid:none) Homo sapiens dentin phosphoryn mRN...    40   0.086
EU278620_1(EU278620|pid:none) Homo sapiens haplotype 1A dentin s...    40   0.086
(Q9NZW4) RecName: Full=Dentin sialophosphoprotein; Contains:   R...    40   0.086
EU278637_1(EU278637|pid:none) Homo sapiens haplotype 37A dentin ...    40   0.086
EU278621_1(EU278621|pid:none) Homo sapiens haplotype 1B dentin s...    40   0.086

 psg: 0.97  gvh: 0.65  alm: 0.45  top: 0.40  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for CHR152 is exc

>CHR152Z.Seq
NNNNNNNNNNTTGAAAAAAAATGAGATTATTAGCAGCATTTCTTTTAGTTATTTATGCAG
CACATAATGGAGTATTTGCAAGAGATCATATTGTTTCATTATCAAAAGGTGAAAGTTTTG
AATTAAATATTGAACAAGGTGATAGAATTAATTTCCATGTAAGAGATAATAATAAACATG
TTTTAACCATTCAAGGAGAATCTCAATCATTTGCAAACCTTTCTCCAAAAGATTCTGCCA
AGCAACAATTTAATGAAGCTGGTGAATTCATTGTTACCGATTCAGCTAATATCTATGTCA
ATAAGGTTATAGTAAGTCAAAAACAACAACAAGATCAACAAAAATGGTTTGAAAAGGATG
CTAAAGATCATGCCAACAAAATGGCAGCAACTAAAGATATGGAACAACATGAACATGAGG
ATCTCCAAAATACAAATGATGCTCAAAACAATGAAAATGCTAAACCAAATTCAGCAGCCA
CCAAAGATTCAAATACCGCTAACAATAAAGCTAAACCATCATCAAATGTTAGTGATAACA
AAGAAAACAATGCTTCCAATAAAGCCAAACCATCATCAAATACCAATGATGCCAAACCAA
AGACTGATGAAACTAAAACCAAAGCTGGTTCACCAAAAACTGATGCCAAACCAAAAACTA
CTCAAGATGAATCCCTTGATAGTGCTGATCCAGAAGCA