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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR149
Library CH
(Link to library)
Clone ID CHR149
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11933-1
Original site URL
Representative seq. ID CHR149P
(Link to Original site)
Representative DNA sequence 
>CHR149 (CHR149Q) /CSM/CH/CHR1-C/CHR149Q.Seq.d/
TATAATACAATTAAAAACAGAAACAGATTATGTTAAAAATTTAAATATATGTATAAAATT
TTATATGGAACCATTATTACAAAAAGAGATTATAAGTAAAGAACAAAGTAGAATGATATT
TAGTGATATAATAATTATATATAATTTTGGTAAAACATTTTTAGAGGAATTAGAGAAAAG
ATGTGGTAACAATTGGAAGATTTATACGAAATTAAGTGATATGTTTTTATCGATTTCATC
ATTTTTAAAGGTTTATAGTAGTTATGTTGAAAATTATGATAATTCAATCGCAGCAATTAA
AGATCTTAAAAAGAATTCCGATAAATTCAATTCAATGATGAATGAAGTTAATAATAGACC
AGAGATTGGTGGATCAGAGATTGATTCATTCTTAATTTTACCAATTCAACGTGTACCAAG
ATATTTCCTATTATTGACAGAATTGGTTAAAAATACATGGACTGATCATCCAGATTATCA
ACCATTGAAAGAAGCTGTCGAAAAAATTAAAAGTATTGCTACCTTTTTAAATGAACGTAA
AAGAAAAGTTGAAAATTTTCAAAAGTTTACTGAAATCCTTTCXXXXXXXXXXCNCCACCA
CCANCANCAACACCACCACCAACAACAACACCACCAACAACAACACCACCAACAACAACA
AAATCAAATTCACAAAAACAATCACAAACATCACAATTATCATCATCACCAGCAATTGTT
AATCAACATCCAAATGGTAGTGAAGGAACATATGAATCATCACCATTATCAGTTTCACAA
AGAACAAGTTCTTCAAATTCAATAACCTCTGTAACCATTGATAGTGATGGTGATGATAAT
CATTTTTCAGATTTAAATTCACATAGTGATTTAAAAACTGGTGATGATAATGATGAAATG
AATATTGACGATCCAAATTTCACCTACATCCCATATGAAACCATTGTTGCAAATAAAAAA
TCTGGAGCTTATGATGTATTTAAATTAGAGTCTTACCTTAACAACCAAGATTTTAAGAGA
TTATTTGGTCAAAATAGATCTGAATTTTATAAATTACCAAAATGGCGTCAAAATCAAAAG
AAGTTCATTTTAAAATTATATTAAATAATAAAATAATAATTTAAACAAAATCAATACAAT
TGTAATATAGACCCTTATTTTTTTAAAAATAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
IIQLKTETDYVKNLNICIKFYMEPLLQKEIISKEQSRMIFSDIIIIYNFGKTFLEELEKR
CGNNWKIYTKLSDMFLSISSFLKVYSSYVENYDNSIAAIKDLKKNSDKFNSMMNEVNNRP
EIGGSEIDSFLILPIQRVPRYFLLLTELVKNTWTDHPDYQPLKEAVEKIKSIATFLNERK
RKVENFQKFTEIL---

---PPPXXTPPPTTTPPTTTPPTTTKSNSQKQSQTSQLSSSPAIVNQHPNGSEGTYESSP
LSVSQRTSSSNSITSVTIDSDGDDNHFSDLNSHSDLKTGDDNDEMNIDDPNFTYIPYETI
VANKKSGAYDVFKLESYLNNQDFKRLFGQNRSEFYKLPKWRQNQKKFILKLY*iik**fk
qnqyncnidpyffknkk
Translated Amino Acid sequence (All Frames) 
Frame A:
yntiknrnrlc*kfkymykilygtiitkrdyk*rtk*ndi**ynnyi*fw*nifrgirek
mw*qledlyeik*yvfidfiifkgl**lc*kl**fnrsn*rs*kefr*iqfnde*s***t
rdwwird*filnftnstctkifpiidrig*kymd*ssrlstierscrkn*kycylfk*t*
kks*kfskvy*npf---

---xhhxxqhhhqqqhhqqqhhqqqqnqihknnhkhhnyhhhqqlliniqmvvkehmnhh
hyqfhkeqvlqiq*pl*plivmvmiiifqi*ihivi*klvmimmk*iltiqisptshmkp
llqiknlelmmyln*sltlttkilrdylvkidlnfinyqngvkikrssf*nyik**nnnl
nkintivi*tliflkik

Frame B:
IIQLKTETDYVKNLNICIKFYMEPLLQKEIISKEQSRMIFSDIIIIYNFGKTFLEELEKR
CGNNWKIYTKLSDMFLSISSFLKVYSSYVENYDNSIAAIKDLKKNSDKFNSMMNEVNNRP
EIGGSEIDSFLILPIQRVPRYFLLLTELVKNTWTDHPDYQPLKEAVEKIKSIATFLNERK
RKVENFQKFTEIL---

---xttxxntttnnnttnnnttnnnkikftktitnitiiiitsnc*stskw**rni*iit
iisftknkffkfnnlcnh***w***sffrfkft**fknw*****ney*rskfhlhpi*nh
cck*kiwsl*ci*irvlp*qprf*eiiwsk*i*il*itkmaskskevhfkiilnnkiii*
tksiql*yrplff*k*k

Frame C:
*yn*kqkqimlki*iyv*nfiwnhyykkrl*vknkve*ylvi**lyiilvkhf*rn*rkd
vvtigrfirn*vicfyrfhhf*rfivvmlkimiiqsqqlkilkripinsiq**mkliidq
rlvdqrlihs*fyqfnvyqdisyy*qnwlkihgliiqiinh*kklskklkvllpf*mnvk
eklkifksllksf---

---PPPXXTPPPTTTPPTTTPPTTTKSNSQKQSQTSQLSSSPAIVNQHPNGSEGTYESSP
LSVSQRTSSSNSITSVTIDSDGDDNHFSDLNSHSDLKTGDDNDEMNIDDPNFTYIPYETI
VANKKSGAYDVFKLESYLNNQDFKRLFGQNRSEFYKLPKWRQNQKKFILKLY*iik**fk
qnqyncnidpyffknkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR149 (CHR149Q) /CSM/CH/CHR1-C/CHR149Q.Seq.d/                       1154   0.0
VHI229 (VHI229Q) /CSM/VH/VHI2-B/VHI229Q.Seq.d/                         44   0.005
SHE778 (SHE778Q) /CSM/SH/SHE7-D/SHE778Q.Seq.d/                         44   0.005
SHA518 (SHA518Q) /CSM/SH/SHA5-A/SHA518Q.Seq.d/                         44   0.005
SFG425 (SFG425Q) /CSM/SF/SFG4-B/SFG425Q.Seq.d/                         44   0.005
AHO807 (AHO807Q) /CSM/AH/AHO8-A/AHO807Q.Seq.d/                         44   0.005
AHM453 (AHM453Q) /CSM/AH/AHM4-C/AHM453Q.Seq.d/                         44   0.005
AHI440 (AHI440Q) /CSM/AH/AHI4-B/AHI440Q.Seq.d/                         44   0.005
AHB805 (AHB805Q) /CSM/AH/AHB8-A/AHB805Q.Seq.d/                         44   0.005
VHL830 (VHL830Q) /CSM/VH/VHL8-B/VHL830Q.Seq.d/                         42   0.019
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42   2e-04  13
AC093519|AC093519.3 Homo sapiens chromosome 16 clone RP11-107C10, complete sequence.    38   0.001  2
AC106745|AC106745.4 Homo sapiens chromosome 16 clone RP11-134D3, complete sequence.    44   0.001  2
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   0.002  13
AC153333|AC153333.3 Felis catus clone RP86-543O7, WORKING DRAFT SEQUENCE, 4 ordered pieces.    56   0.002  1
AC134361|AC134361.2 Rattus norvegicus clone CH230-6H10, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.005  2
AC144996|AC144996.2 Rattus norvegicus clone CH230-69E24 strain Brown Norway, WORKING DRAFT SEQUENCE, 11 ordered pieces.    36   0.005  2
AC117130|AC117130.5 Rattus norvegicus clone CH230-320O24, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   0.005  2
AL590079|AL590079.3 Human chromosome 14 DNA sequence Partial sequence from BAC C-2502D3  of library CalTech-D from chromosome 14 of Homo sapiens (Human).    38   0.005  2
DU341996|DU341996.1 1098313055887 CHORI-243 Ovis aries genomic clone CH243-84D8, genomic survey sequence.    54   0.007  1
dna update 2005.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXH8) RecName: Full=Guanine exchange factor for Rac 30;            136   2e-30
AY281052_1(AY281052|pid:none) Entamoeba histolytica guanine nucl...   134   6e-30
(Q9TW28) RecName: Full=Myosin-M heavy chain; AltName: Full=RhoGE...   119   1e-25
AC114265_7(AC114265|pid:none) Dictyostelium discoideum chromosom...   111   4e-23
T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi...   110   7e-23
CR788310_3(CR788310|pid:none) Zebrafish DNA sequence from clone ...   105   4e-21
BT021872_1(BT021872|pid:none) Bos taurus FGD1 family, member 3 (...   104   5e-21
BC105139_1(BC105139|pid:none) Bos taurus FYVE, RhoGEF and PH dom...   104   5e-21
AK149626_1(AK149626|pid:none) Mus musculus bone marrow macrophag...   104   7e-21
(Q91ZT5) RecName: Full=FYVE, RhoGEF and PH domain-containing pro...   104   7e-21
protein update 2009. 4.12
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.67  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHR149 is cyt
5' end seq. ID CHR149F
5' end seq. 
>CHR149F.Seq
TATAATACAATTAAAAACAGAAACAGATTATGTTAAAAATTTAAATATATGTATAAAATT
TTATATGGAACCATTATTACAAAAAGAGATTATAAGTAAAGAACAAAGTAGAATGATATT
TAGTGATATAATAATTATATATAATTTTGGTAAAACATTTTTAGAGGAATTAGAGAAAAG
ATGTGGTAACAATTGGAAGATTTATACGAAATTAAGTGATATGTTTTTATCGATTTCATC
ATTTTTAAAGGTTTATAGTAGTTATGTTGAAAATTATGATAATTCAATCGCAGCAATTAA
AGATCTTAAAAAGAATTCCGATAAATTCAATTCAATGATGAATGAAGTTAATAATAGACC
AGAGATTGGTGGATCAGAGATTGATTCATTCTTAATTTTACCAATTCAACGTGTACCAAG
ATATTTCCTATTATTGACAGAATTGGTTAAAAATACATGGACTGATCATCCAGATTATCA
ACCATTGAAAGAAGCTGTCGAAAAAATTAAAAGTATTGCTACCTTTTTAAATGAACGTAA
AAGAAAAGTTGAAAATTTTCAAAAGTTTACTGAAATCCTTTCNNNNNNNNNN
Length of 5' end seq. 592
3' end seq. ID CHR149Z
3' end seq. 
>CHR149Z.Seq
NNNNNNNNNNCNCCACCACCANCANCAACACCACCACCAACAACAACACCACCAACAACA
ACACCACCAACAACAACAAAATCAAATTCACAAAAACAATCACAAACATCACAATTATCA
TCATCACCAGCAATTGTTAATCAACATCCAAATGGTAGTGAAGGAACATATGAATCATCA
CCATTATCAGTTTCACAAAGAACAAGTTCTTCAAATTCAATAACCTCTGTAACCATTGAT
AGTGATGGTGATGATAATCATTTTTCAGATTTAAATTCACATAGTGATTTAAAAACTGGT
GATGATAATGATGAAATGAATATTGACGATCCAAATTTCACCTACATCCCATATGAAACC
ATTGTTGCAAATAAAAAATCTGGAGCTTATGATGTATTTAAATTAGAGTCTTACCTTAAC
AACCAAGATTTTAAGAGATTATTTGGTCAAAATAGATCTGAATTTTATAAATTACCAAAA
TGGCGTCAAAATCAAAAGAAGTTCATTTTAAAATTATATTAAATAATAAAATAATAATTT
AAACAAAATCAATACAATTGTAATATAGACCCTTATTTTTTTAAAAATAAAAAA
Length of 3' end seq. 594
Connected seq. ID CHR149P
Connected seq. 
>CHR149P.Seq
TATAATACAATTAAAAACAGAAACAGATTATGTTAAAAATTTAAATATATGTATAAAATT
TTATATGGAACCATTATTACAAAAAGAGATTATAAGTAAAGAACAAAGTAGAATGATATT
TAGTGATATAATAATTATATATAATTTTGGTAAAACATTTTTAGAGGAATTAGAGAAAAG
ATGTGGTAACAATTGGAAGATTTATACGAAATTAAGTGATATGTTTTTATCGATTTCATC
ATTTTTAAAGGTTTATAGTAGTTATGTTGAAAATTATGATAATTCAATCGCAGCAATTAA
AGATCTTAAAAAGAATTCCGATAAATTCAATTCAATGATGAATGAAGTTAATAATAGACC
AGAGATTGGTGGATCAGAGATTGATTCATTCTTAATTTTACCAATTCAACGTGTACCAAG
ATATTTCCTATTATTGACAGAATTGGTTAAAAATACATGGACTGATCATCCAGATTATCA
ACCATTGAAAGAAGCTGTCGAAAAAATTAAAAGTATTGCTACCTTTTTAAATGAACGTAA
AAGAAAAGTTGAAAATTTTCAAAAGTTTACTGAAATCCTTTC----------CNCCACCA
CCANCANCAACACCACCACCAACAACAACACCACCAACAACAACACCACCAACAACAACA
AAATCAAATTCACAAAAACAATCACAAACATCACAATTATCATCATCACCAGCAATTGTT
AATCAACATCCAAATGGTAGTGAAGGAACATATGAATCATCACCATTATCAGTTTCACAA
AGAACAAGTTCTTCAAATTCAATAACCTCTGTAACCATTGATAGTGATGGTGATGATAAT
CATTTTTCAGATTTAAATTCACATAGTGATTTAAAAACTGGTGATGATAATGATGAAATG
AATATTGACGATCCAAATTTCACCTACATCCCATATGAAACCATTGTTGCAAATAAAAAA
TCTGGAGCTTATGATGTATTTAAATTAGAGTCTTACCTTAACAACCAAGATTTTAAGAGA
TTATTTGGTCAAAATAGATCTGAATTTTATAAATTACCAAAATGGCGTCAAAATCAAAAG
AAGTTCATTTTAAAATTATATTAAATAATAAAATAATAATTTAAACAAAATCAATACAAT
TGTAATATAGACCCTTATTTTTTTAAAAATAAAAAA
Length of connected seq. 1166
Full length Seq ID -
Full length Seq. -
Length of full length seq. -