CHR146
Library CH
(Link to library)
Clone ID CHR146
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10720-1
Original site URL
Representative seq. ID CHR146P
(Link to Original site)
Representative DNA sequence
>CHR146 (CHR146Q) /CSM/CH/CHR1-B/CHR146Q.Seq.d/
CACTGTTGGCCTACTGGTAAAAACAAAAACAAAAAACAAAAAACCAAAAACAAAAAAACA
AGAAAACATAATTTTTTTTTAATACCATTAAAATAATTTTTCTCGTACAAAAATAATGAG
CGATAACAATTTANAAACACCAACTAATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAA
AGTAGAAAATACTTTACCAATTGAAGACGAAAAACTTGAACAACCATCAGAAGAAATTAA
AGTTGAAGCCACATCAGTCTCTGTTGAANAAACCAAACCAACTGAAGAGGTAAAACCAGT
CGAAGAAGTAAAACCAATCGAAGAAGTAAAACCAGTTGAAGAAGTTAAACCANTTGAAGA
AGTCAAACCAGTCGAANAAGTCAAACCAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAA
ACCAGTCXXXXXXXXXXTGATCAAATTAAACTTGGTGATACCATTCATAAAGTAATGAAA
TCTGAATCATCAGCAAAGTTTGGTTTAGGTGCTATGCTTGATGCTGCTAAACTTCCACAA
AATAAAGATATGAGTGATAATTTGAATAAAACTATTCCATGGTTCGTTAGAAAAGTAGTT
TTCCCACTTAGTATTAAAAAAGATTTTGCTCAATTCCTTAATTTCATTGAAGCTAAACCA
GTTAAAGAATCAAAACCAGTTAAAGAATCAAAATCTAAAACAACAACAACTACAACTACC
ACCACTACTACTGAAGAAGTTAAACCATCAGAAGAAGTTAAACCATCAGAAGAAGTTAAA
CCATCAGAAGAAGTCAAACCATCAGAAGAAGTCAAACCATCAGAAGAAGTTAAACCATCA
GAAGAAGCTAAACCATCAGAGGAAGTTAAACCATCAGAAGAGGAAGCCAAACCATCAAAA
GAGGAAGCCGAATCATCAAAAGAGGAAGGCAAATCATCAGAAGAAGTTAAACCAGTTGAA
TCAAACACCACCACCACTACCACAACAACTTCATCAGAAGAAGTTAAATCAACTGAAGAA
ATCAAACCAACCACTCAATCAGAAGAAGTTAAGCCATCTGAAACTACTGTTGTTGTTGGT
GAAGTTGCTTAAAAATTCAATCCAATAATCATTAAATATATACTACCACATACATTTTAA
TTAAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence
tvgllvktktknkkpktkkqeniiff*yh*NNFSRTKIMSDNNLXTPTNVSEETKVEEVK
VENTLPIEDEKLEQPSEEIKVEATSVSVEXTKPTEEVKPVEEVKPIEEVKPVEEVKPXEE
VKPVEXVKPVEEVKPTEEVKPV---

---DQIKLGDTIHKVMKSESSAKFGLGAMLDAAKLPQNKDMSDNLNKTIPWFVRKVVFPL
SIKKDFAQFLNFIEAKPVKESKPVKESKSKTTTTTTTTTTTEEVKPSEEVKPSEEVKPSE
EVKPSEEVKPSEEVKPSEEAKPSEEVKPSEEEAKPSKEEAESSKEEGKSSEEVKPVESNT
TTTTTTTSSEEVKSTEEIKPTTQSEEVKPSETTVVVGEVA*kfnpiiikyilphtf*lk


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgknknkkqktknkktrkhnffliplk*ffsyknner*qfxntn*cfrgn*srrs*
srkyftn*rrkt*ttirrn*s*shislc*xnqtn*rgktsrrsktnrrskts*rs*tx*r
sqtsrxsqts*rsqtn*rskts---

---*sn*tw*yhs*snei*iiskvwfrcya*cc*tstk*rye**fe*nysmvr*kssfpt
*y*krfcsip*fh*s*ts*rikts*riki*nnnnynyhhyy*rs*tirrs*tirrs*tir
rsqtirrsqtirrs*tirrs*tirgs*tirrgsqtikrgsriikrgrqiirrs*ts*ikh
hhhyhnnfirrs*in*rnqtnhsirrs*ai*nycccw*sclkiqsnnh*iytttyilikr

Frame B:
tvgllvktktknkkpktkkqeniiff*yh*NNFSRTKIMSDNNLXTPTNVSEETKVEEVK
VENTLPIEDEKLEQPSEEIKVEATSVSVEXTKPTEEVKPVEEVKPIEEVKPVEEVKPXEE
VKPVEXVKPVEEVKPTEEVKPV---

---DQIKLGDTIHKVMKSESSAKFGLGAMLDAAKLPQNKDMSDNLNKTIPWFVRKVVFPL
SIKKDFAQFLNFIEAKPVKESKPVKESKSKTTTTTTTTTTTEEVKPSEEVKPSEEVKPSE
EVKPSEEVKPSEEVKPSEEAKPSEEVKPSEEEAKPSKEEAESSKEEGKSSEEVKPVESNT
TTTTTTTSSEEVKSTEEIKPTTQSEEVKPSETTVVVGEVA*kfnpiiikyilphtf*lk

Frame C:
llayw*kqkqktknqkqknkkt*fffntikiiflvqk**aitixkhqlmfqrklkskklk
*kilyqlktknlnnhqkklklkphqsllxkpnqlkr*nqskk*nqskk*nqlkklnxlkk
snqsxksnqlkksnqlkk*nq---

---iklnlvipfik**nlnhqqslv*vlclmllnfhkiki*vii*iklfhgslek*fshl
vlkkillnslislklnqlknqnqlknqnlkqqqlqlpplllkklnhqkklnhqkklnhqk
ksnhqkksnhqkklnhqkklnhqrklnhqkrkpnhqkrkpnhqkrkanhqkklnqlnqtp
pplpqqlhqkklnqlkksnqplnqkklshlklllllvkllknsiq*slniyyhihfn*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR146 (CHR146Q) /CSM/CH/CHR1-B/CHR146Q.Seq.d/ 2034 0.0
AHD318 (AHD318Q) /CSM/AH/AHD3-A/AHD318Q.Seq.d/ 1409 0.0
AHC727 (AHC727Q) /CSM/AH/AHC7-B/AHC727Q.Seq.d/ 1407 0.0
CHF523 (CHF523Q) /CSM/CH/CHF5-A/CHF523Q.Seq.d/ 1400 0.0
SFE244 (SFE244Q) /CSM/SF/SFE2-B/SFE244Q.Seq.d/ 1370 0.0
AHI482 (AHI482Q) /CSM/AH/AHI4-D/AHI482Q.Seq.d/ 1358 0.0
CHP873 (CHP873Q) /CSM/CH/CHP8-D/CHP873Q.Seq.d/ 1304 0.0
SFI171 (SFI171Q) /CSM/SF/SFI1-C/SFI171Q.Seq.d/ 1287 0.0
AHG644 (AHG644Q) /CSM/AH/AHG6-B/AHG644Q.Seq.d/ 1136 0.0
SFF306 (SFF306Q) /CSM/SF/SFF3-A/SFF306Q.Seq.d/ 1130 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Z37981|Z37981.1 D.discoideum gene for protein kinase. 40 3e-10 6
CV219883|CV219883.1 EST879593 non-normalized T1 cDNA library Trichomonas vaginalis cDNA clone TVTD023 5' end, mRNA sequence. 48 5e-07 2
CB037938|CB037938.1 Tc_ad2_39H07_TEXF1 Teladorsagia circumcincta adults library 2 Teladorsagia circumcincta cDNA clone Tc_ad2_39H07 5' similar to Q94417 ZK858.3 protein. Caenorhabditis elegans, mRNA sequence. 50 6e-07 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 9e-05 12
AF170083|AF170083.2 Candida albicans putative transcriptional repressor (SSN6) gene, complete cds. 48 2e-04 2
B67199|B67199.1 CpG0015B CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence. 52 4e-04 2
CR854827|CR854827.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-181D19. 58 4e-04 1
BX005234|BX005234.15 Zebrafish DNA sequence from clone DKEY-7J14 in linkage group 16. 58 4e-04 1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 6e-04 11
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 48 7e-04 8
dna update 2005.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR382134_341(CR382134|pid:none) Debaryomyces hansenii strain CBS... 35 6.1

protein update 2008.11. 8
PSORT

psg: 0.79 gvh: 0.25 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CHR146 is cyt

5' end seq. ID CHR146F
5' end seq.
>CHR146F.Seq
CACTGTTGGCCTACTGGTAAAAACAAAAACAAAAAACAAAAAACCAAAAACAAAAAAACA
AGAAAACATAATTTTTTTTTAATACCATTAAAATAATTTTTCTCGTACAAAAATAATGAG
CGATAACAATTTANAAACACCAACTAATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAA
AGTAGAAAATACTTTACCAATTGAAGACGAAAAACTTGAACAACCATCAGAAGAAATTAA
AGTTGAAGCCACATCAGTCTCTGTTGAANAAACCAAACCAACTGAAGAGGTAAAACCAGT
CGAAGAAGTAAAACCAATCGAAGAAGTAAAACCAGTTGAAGAAGTTAAACCANTTGAAGA
AGTCAAACCAGTCGAANAAGTCAAACCAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAA
ACCAGTCNNNNNNNNNN
Length of 5' end seq. 437
3' end seq. ID CHR146Z
3' end seq.
>CHR146Z.Seq
NNNNNNNNNNTGATCAAATTAAACTTGGTGATACCATTCATAAAGTAATGAAATCTGAAT
CATCAGCAAAGTTTGGTTTAGGTGCTATGCTTGATGCTGCTAAACTTCCACAAAATAAAG
ATATGAGTGATAATTTGAATAAAACTATTCCATGGTTCGTTAGAAAAGTAGTTTTCCCAC
TTAGTATTAAAAAAGATTTTGCTCAATTCCTTAATTTCATTGAAGCTAAACCAGTTAAAG
AATCAAAACCAGTTAAAGAATCAAAATCTAAAACAACAACAACTACAACTACCACCACTA
CTACTGAAGAAGTTAAACCATCAGAAGAAGTTAAACCATCAGAAGAAGTTAAACCATCAG
AAGAAGTCAAACCATCAGAAGAAGTCAAACCATCAGAAGAAGTTAAACCATCAGAAGAAG
CTAAACCATCAGAGGAAGTTAAACCATCAGAAGAGGAAGCCAAACCATCAAAAGAGGAAG
CCGAATCATCAAAAGAGGAAGGCAAATCATCAGAAGAAGTTAAACCAGTTGAATCAAACA
CCACCACCACTACCACAACAACTTCATCAGAAGAAGTTAAATCAACTGAAGAAATCAAAC
CAACCACTCAATCAGAAGAAGTTAAGCCATCTGAAACTACTGTTGTTGTTGGTGAAGTTG
CTTAAAAATTCAATCCAATAATCATTAAATATATACTACCACATACATTTTAATTAAAAG
A
Length of 3' end seq. 721
Connected seq. ID CHR146P
Connected seq.
>CHR146P.Seq
CACTGTTGGCCTACTGGTAAAAACAAAAACAAAAAACAAAAAACCAAAAACAAAAAAACA
AGAAAACATAATTTTTTTTTAATACCATTAAAATAATTTTTCTCGTACAAAAATAATGAG
CGATAACAATTTANAAACACCAACTAATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAA
AGTAGAAAATACTTTACCAATTGAAGACGAAAAACTTGAACAACCATCAGAAGAAATTAA
AGTTGAAGCCACATCAGTCTCTGTTGAANAAACCAAACCAACTGAAGAGGTAAAACCAGT
CGAAGAAGTAAAACCAATCGAAGAAGTAAAACCAGTTGAAGAAGTTAAACCANTTGAAGA
AGTCAAACCAGTCGAANAAGTCAAACCAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAA
ACCAGTC----------TGATCAAATTAAACTTGGTGATACCATTCATAAAGTAATGAAA
TCTGAATCATCAGCAAAGTTTGGTTTAGGTGCTATGCTTGATGCTGCTAAACTTCCACAA
AATAAAGATATGAGTGATAATTTGAATAAAACTATTCCATGGTTCGTTAGAAAAGTAGTT
TTCCCACTTAGTATTAAAAAAGATTTTGCTCAATTCCTTAATTTCATTGAAGCTAAACCA
GTTAAAGAATCAAAACCAGTTAAAGAATCAAAATCTAAAACAACAACAACTACAACTACC
ACCACTACTACTGAAGAAGTTAAACCATCAGAAGAAGTTAAACCATCAGAAGAAGTTAAA
CCATCAGAAGAAGTCAAACCATCAGAAGAAGTCAAACCATCAGAAGAAGTTAAACCATCA
GAAGAAGCTAAACCATCAGAGGAAGTTAAACCATCAGAAGAGGAAGCCAAACCATCAAAA
GAGGAAGCCGAATCATCAAAAGAGGAAGGCAAATCATCAGAAGAAGTTAAACCAGTTGAA
TCAAACACCACCACCACTACCACAACAACTTCATCAGAAGAAGTTAAATCAACTGAAGAA
ATCAAACCAACCACTCAATCAGAAGAAGTTAAGCCATCTGAAACTACTGTTGTTGTTGGT
GAAGTTGCTTAAAAATTCAATCCAATAATCATTAAATATATACTACCACATACATTTTAA
TTAAAAGA
Length of connected seq. 1138
Full length Seq ID -
Full length Seq. -
Length of full length seq. -