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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR140
Library CH
(Link to library)
Clone ID CHR140
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15613-1
Original site URL
Representative seq. ID CHR140P
(Link to Original site)
Representative DNA sequence 
>CHR140 (CHR140Q) /CSM/CH/CHR1-B/CHR140Q.Seq.d/
AAAAAAAGTTTTAATCACTATTAAAAATATATATATTATAATTGTCAATTTTTATTCGTA
TAATTTATTTGTTTATATATTATTAATTATTAAAAAAAATAATAATTTATTTGTTTATAT
ATTAATAATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGNGNAAAAAAAAAXXXXXXXXXXTAATGTTGATGAAGGTGGTGAAATTAA
TTCAAATCCAATCAATGATCATGGTCCAAGTATTATCGCTCATCATTCAACCGTTGAAAT
TAGAAAAACTAAACTGATTAGACAAATCCATCAATAACAAGTGAATTCCCATACATTGTT
TCAAATTATGCTAGTGTTCGAGTCCAAGAGATAACATTATCACCAACTACTCAATTACCA
TTCAAATGTGATAGTTCCTTAATTTTATTTGATTATGCCTCAAGTATAAATGCATCTTTG
TTTGTTTGTAATAATATTCATGGAGATGCTTATAATAGTACCTATGCAAATATTGTCTCT
GGTAATGATATCAATTCATTCTCTTGTGAAATCATTCAATTCGATCCAAATATTCAACCA
CCATCTAGATCAACTCCAAATATAGTCTGTTCAAATGAATCTCATCATACCTATAAATAT
GATTTTAGATTAACAAAAGCCATCATTGCTGTCATTGTCATTGCTTGTACTTTCCTCACT
TTAATTCCTGTGGTTTTATTAGCAAATAAAATTTATAAAAATCTTTATAGAGGTTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
KKVLITIKNIYIIIVNFYSYNLFVYILLIIKKNNNLFVYILIIIIKKKKKKKKKKKKKKK
KKKXXKK---

---NVDEGGEINSNPINDHGPSIIAHHSTVEIRKTKLIRQIHQ*qvnshtlfqimlvfes
kr*hyhqllnyhsnvivp*fylimpqv*mhlclfviifmemliivpmqilslvmisihsl
vksfnsiqifnhhldqlqi*svqmnliipinmild*qkpsllslsllvlssl*flwfy*q
ikfikifiev
Translated Amino Acid sequence (All Frames) 
Frame A:
kksfnhy*kyiyyncqflfv*ficlyiiny*kk**ficlyinnnnkkkkkkkkkkkkkkk
kkkgxkk---

---*c**rw*n*fksnq*swskyyrssfnr*n*kn*td*tnpsitsefpyivsnyasvrv
qeitlspttqlpfkcdsslilfdyassinaslfvcnnihgdaynstyanivsgndinsfs
ceiiqfdpniqppsrstpnivcsneshhtykydfrltkaiiaviviactfltlipvvlla
nkiyknlyrgy

Frame B:
KKVLITIKNIYIIIVNFYSYNLFVYILLIIKKNNNLFVYILIIIIKKKKKKKKKKKKKKK
KKKXXKK---

---NVDEGGEINSNPINDHGPSIIAHHSTVEIRKTKLIRQIHQ*qvnshtlfqimlvfes
kr*hyhqllnyhsnvivp*fylimpqv*mhlclfviifmemliivpmqilslvmisihsl
vksfnsiqifnhhldqlqi*svqmnliipinmild*qkpsllslsllvlssl*flwfy*q
ikfikifiev

Frame C:
kkf*sllkiyil*lsifiriiylfiyy*llkkiiiylfiy*****kkkkkkkkkkkkkkk
kkrxkkk---

---mlmkvvkliqiqsmimvqvlsliiqplklekln*ldksinnk*ipihcfklc*cssp
rdniitnysitiqm**flnfi*lclkykcifvcl**yswrcl**ylckyclw**yqfill
*nhsirskystti*inskyslfk*issyl*i*f*inkshhcchchclyfphfnscgfisk
*nl*ksl*rl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR140 (CHR140Q) /CSM/CH/CHR1-B/CHR140Q.Seq.d/                       1118   0.0
CHI179 (CHI179Q) /CSM/CH/CHI1-D/CHI179Q.Seq.d/                       1082   0.0
AHM542 (AHM542Q) /CSM/AH/AHM5-B/AHM542Q.Seq.d/                       1082   0.0
AHK121 (AHK121Q) /CSM/AH/AHK1-A/AHK121Q.Seq.d/                       1082   0.0
AHH436 (AHH436Q) /CSM/AH/AHH4-B/AHH436Q.Seq.d/                       1082   0.0
AHF417 (AHF417Q) /CSM/AH/AHF4-A/AHF417Q.Seq.d/                       1082   0.0
AHE718 (AHE718Q) /CSM/AH/AHE7-A/AHE718Q.Seq.d/                       1082   0.0
AHD769 (AHD769Q) /CSM/AH/AHD7-C/AHD769Q.Seq.d/                       1082   0.0
AHD258 (AHD258Q) /CSM/AH/AHD2-C/AHD258Q.Seq.d/                       1082   0.0
AHB517 (AHB517Q) /CSM/AH/AHB5-A/AHB517Q.Seq.d/                       1082   0.0
own update 2002.10. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BZ388217|BZ388217.1 EINAK34TR EI_10_12_KB Entamoeba invadens genomic clone EINAK34,genomic survey sequence.    52   0.018  1
AC005323|AC005323.1 Homo sapiens chromosome 17, clone hRPK.799_N_11, complete sequence.    50   0.032  4
AE001160|AE001160.1 Borrelia burgdorferi (section 46 of 70) of the complete genome.    44   0.045  2
DU485388|DU485388.1 1098421079775 CHORI-243 Ovis aries genomic clone CH243-344D11, genomic survey sequence.    50   0.070  1
DE129686|DE129686.1 Oryzias latipes DNA, forward end of BAC clone: Mn0074B07.    50   0.070  1
AX458545|AX458545.1 Sequence 91 from Patent WO0246454.             40   0.13   2
AL359633|AL359633.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-795J1.    48   0.18   3
CW651102|CW651102.1 OA_ABa0191K14.f OA_ABa Oryza australiensis genomic clone OA_ABa0191K14 5', genomic survey sequence.    34   0.18   3
AC073888|AC073888.2 Homo sapiens chromosome 6 clone RP11-124N8, WORKING DRAFT SEQUENCE, 16 unordered pieces.    48   0.28   1
AC128760|AC128760.3 Rattus norvegicus clone CH230-195K22, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    48   0.28   1
dna update 2005.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U48717_1(U48717|pid:none) Cryptosporidium parvum zinc finger pro...    35   2.6
AJ720220_1(AJ720220|pid:none) Gallus gallus mRNA for hypothetica...    33   7.4
protein update 2008.11. 8
PSORT 

 psg: 0.97  gvh: 0.20  alm: 0.31  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 1.21  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.42  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHR140 is nuc
5' end seq. ID CHR140F
5' end seq. 
>CHR140F.Seq
AAAAAAAGTTTTAATCACTATTAAAAATATATATATTATAATTGTCAATTTTTATTCGTA
TAATTTATTTGTTTATATATTATTAATTATTAAAAAAAATAATAATTTATTTGTTTATAT
ATTAATAATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGNGNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 213
3' end seq. ID CHR140Z
3' end seq. 
>CHR140Z.Seq
NNNNNNNNNNTAATGTTGATGAAGGTGGTGAAATTAATTCAAATCCAATCAATGATCATG
GTCCAAGTATTATCGCTCATCATTCAACCGTTGAAATTAGAAAAACTAAACTGATTAGAC
AAATCCATCAATAACAAGTGAATTCCCATACATTGTTTCAAATTATGCTAGTGTTCGAGT
CCAAGAGATAACATTATCACCAACTACTCAATTACCATTCAAATGTGATAGTTCCTTAAT
TTTATTTGATTATGCCTCAAGTATAAATGCATCTTTGTTTGTTTGTAATAATATTCATGG
AGATGCTTATAATAGTACCTATGCAAATATTGTCTCTGGTAATGATATCAATTCATTCTC
TTGTGAAATCATTCAATTCGATCCAAATATTCAACCACCATCTAGATCAACTCCAAATAT
AGTCTGTTCAAATGAATCTCATCATACCTATAAATATGATTTTAGATTAACAAAAGCCAT
CATTGCTGTCATTGTCATTGCTTGTACTTTCCTCACTTTAATTCCTGTGGTTTTATTAGC
AAATAAAATTTATAAAAATCTTTATAGAGGTTAT
Length of 3' end seq. 574
Connected seq. ID CHR140P
Connected seq. 
>CHR140P.Seq
AAAAAAAGTTTTAATCACTATTAAAAATATATATATTATAATTGTCAATTTTTATTCGTA
TAATTTATTTGTTTATATATTATTAATTATTAAAAAAAATAATAATTTATTTGTTTATAT
ATTAATAATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGGNGNAAAAAAAAA----------TAATGTTGATGAAGGTGGTGAAATTAA
TTCAAATCCAATCAATGATCATGGTCCAAGTATTATCGCTCATCATTCAACCGTTGAAAT
TAGAAAAACTAAACTGATTAGACAAATCCATCAATAACAAGTGAATTCCCATACATTGTT
TCAAATTATGCTAGTGTTCGAGTCCAAGAGATAACATTATCACCAACTACTCAATTACCA
TTCAAATGTGATAGTTCCTTAATTTTATTTGATTATGCCTCAAGTATAAATGCATCTTTG
TTTGTTTGTAATAATATTCATGGAGATGCTTATAATAGTACCTATGCAAATATTGTCTCT
GGTAATGATATCAATTCATTCTCTTGTGAAATCATTCAATTCGATCCAAATATTCAACCA
CCATCTAGATCAACTCCAAATATAGTCTGTTCAAATGAATCTCATCATACCTATAAATAT
GATTTTAGATTAACAAAAGCCATCATTGCTGTCATTGTCATTGCTTGTACTTTCCTCACT
TTAATTCCTGTGGTTTTATTAGCAAATAAAATTTATAAAAATCTTTATAGAGGTTAT
Length of connected seq. 767
Full length Seq ID -
Full length Seq. -
Length of full length seq. -