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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHR134
Library CH
(Link to library)
Clone ID CHR134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHR134P
(Link to Original site)
Representative DNA sequence 
>CHR134 (CHR134Q) /CSM/CH/CHR1-B/CHR134Q.Seq.d/
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATANGTAAAATTACGTATACATATATAAATAA
TTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXXXXXXX
XTNTTCACCATCNTCATCTGNTGCAAGNTNTTCTCCATCTTCATNTGNTGCAAGCTTTTC
NCCATCTTCATNTGCTGCAAGCTNTTCCCCNTCTTCATCTGCNTCATCAAGCTNTTCCCC
NTCTTCNTCTGCATCATCAAGCTNTGCCCCATCTTCATCTGCATCATCAAGNTCTGCTCC
ATCTTCATNTGCATCATCTTCATNGGCATCATCTTCATCTGCATCATTTGCAGCAACTAC
AGCTGCAACTACNGATTGCAACTACAGCTGCAACTACAACTGCAACTACANCCGC
sequence update 2002.10.25
Translated Amino Acid sequence 
stq*****k**q**giiik**ysynl*llxvklrihi*iiiiiivfknk*INNKKK---

---XSPSSSXAXXSPSSXXASFSPSSXAASXSPSSSASSSXSPSSSASSSXAPSSSASSX
SAPSSXASSSXASSSSASFAATTAATTDCNYSCNYNCNYXR
Translated Amino Acid sequence (All Frames) 
Frame A:
iqlsnnnnknnnnnkel*snnniaiiynyyx*nyvyiyk*lllslflkink*iikkk---

---XSPSSSXAXXSPSSXXASFSPSSXAASXSPSSSASSSXSPSSSASSSXAPSSSASSX
SAPSSXASSSXASSSSASFAATTAATTDCNYSCNYNCNYXR

Frame B:
fnsviiiikiitiirnynqiii*l*siitixkitytyinnyyyhcf*k*ink**kk---

---xhhxhlxqxxlhlhxxqafxhlhxlqaxpxlhlxhqaxpxlxlhhqaxphlhlhhqx
llhlhxhhlhxhhlhlhhlqqlqlqlxiattaatttattx

Frame C:
stq*****k**q**giiik**ysynl*llxvklrihi*iiiiiivfknk*INNKKK---

---ftixixckxfsifxxcklfxifxccklfpxficxiklfpxfxciiklcpificiikx
csifxciifxgiificiicsnyscnyxlqlqlqlqlqlxp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR134 (CHR134Q) /CSM/CH/CHR1-B/CHR134Q.Seq.d/                        202   3e-51
SLI263 (SLI263Q) /CSM/SL/SLI2-C/SLI263Q.Seq.d/                        194   8e-49
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/                        194   8e-49
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/                        194   8e-49
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/                        194   8e-49
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/                        194   8e-49
SLH308 (SLH308Q) /CSM/SL/SLH3-A/SLH308Q.Seq.d/                        194   8e-49
SLF396 (SLF396Q) /CSM/SL/SLF3-D/SLF396Q.Seq.d/                        194   8e-49
SLE543 (SLE543Q) /CSM/SL/SLE5-B/SLE543Q.Seq.d/                        194   8e-49
SLE435 (SLE435Q) /CSM/SL/SLE4-B/SLE435Q.Seq.d/                        194   8e-49
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.   194   7e-74  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   194   8e-70  3
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    48   0.17   1
AY699072|AY699072.1 Fenneropenaeus chinensis clone TE1-58445 minisatellite sequence.    34   0.46   2
AZ574185|AZ574185.1 325PvG08 Pv MBN #30 Plasmodium vivax genomic 3', DNA sequence.    46   0.65   1
CR380956|CR380956.1 Candida glabrata strain CBS138 chromosome J complete sequence.    46   0.65   1
AE003491|AE003491.4 Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence.    38   1.2    2
CC057052|CC057052.1 SALK_111619.51.85.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_111619.51.85.x, DNA sequence.    44   2.6    1
BX895717|BX895717.1 Arabidopsis thaliana T-DNA flanking sequence GK-746A03-023942.    44   2.6    1
AC068197|AC068197.4 Genomic sequence for Arabidopsis thaliana BAC F16A14 from chromosome I, complete sequence.    44   2.6    1
dna update 2005.11.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 137,886,412
protein update 2009. 4.12
PSORT 

 psg: 0.75  gvh: 0.58  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.84  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for CHR134 is mit
5' end seq. ID CHR134F
5' end seq. 
>CHR134F.Seq
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATANGTAAAATTACGTATACATATATAAATAA
TTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 181
3' end seq. ID CHR134Z
3' end seq. 
>CHR134Z.Seq
NNNNNNNNNNTNTTCACCATCNTCATCTGNTGCAAGNTNTTCTCCATCTTCATNTGNTGC
AAGCTTTTCNCCATCTTCATNTGCTGCAAGCTNTTCCCCNTCTTCATCTGCNTCATCAAG
CTNTTCCCCNTCTTCNTCTGCATCATCAAGCTNTGCCCCATCTTCATCTGCATCATCAAG
NTCTGCTCCATCTTCATNTGCATCATCTTCATNGGCATCATCTTCATCTGCATCATTTGC
AGCAACTACAGCTGCAACTACNGATTGCAACTACAGCTGCAACTACAACTGCAACTACAN
CCGC
Length of 3' end seq. 304
Connected seq. ID CHR134P
Connected seq. 
>CHR134P.Seq
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATANGTAAAATTACGTATACATATATAAATAA
TTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA---------
-TNTTCACCATCNTCATCTGNTGCAAGNTNTTCTCCATCTTCATNTGNTGCAAGCTTTTC
NCCATCTTCATNTGCTGCAAGCTNTTCCCCNTCTTCATCTGCNTCATCAAGCTNTTCCCC
NTCTTCNTCTGCATCATCAAGCTNTGCCCCATCTTCATCTGCATCATCAAGNTCTGCTCC
ATCTTCATNTGCATCATCTTCATNGGCATCATCTTCATCTGCATCATTTGCAGCAACTAC
AGCTGCAACTACNGATTGCAACTACAGCTGCAACTACAACTGCAACTACANCCGC
Length of connected seq. 465
Full length Seq ID -
Full length Seq. -
Length of full length seq. -