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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR133
Library CH
(Link to library)
Clone ID CHR133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11110-1|Contig-U13144-1
Original site URL
Representative seq. ID CHR133P
(Link to Original site)
Representative DNA sequence 
>CHR133 (CHR133Q) /CSM/CH/CHR1-B/CHR133Q.Seq.d/
TTTGTACCAGCATTCAAGGTAATTCCTTATTGGGGTACACAACAACAACGTACTACCATT
AGAAAATATTGGAATCCAAAGAAATTGTATCATAGAAATTCACCATTCCACGTTTTAATC
ACATCGTACAATGTGATAGTACGTGATGAAAAGTATTTCCATAGATTACGTTGGCAATAT
ATGGTATTGGATGAAGCTCATGCTATCAAGAGTTCAGCAAGTAATCGTTGGAAAACTCTA
ATGAGTTTTAATTGTAGAAATAGACTCTTACTCACTGGTACACCCATTCAAAATAGTATG
GCTGAACTTTGGGCTTTACTTCATTTCATTATGCCAACATTCTTTGATTCTCATGATGAA
TTTGCAGAGTGGTTCTCAAAGGATATCGAAAATCATGCTATGTCACAAGGTGGTTTGAAT
GAACATCAACTCAATCGTCTTCATATGATTTTGAAACCATTCATGTTGAGAAGAATTAAA
AGAGATGTAGAGAATGAAATGCCATCAAAAACAGAGGTTGAAGTCTATTGTAACCTTACT
CATCGTCAAAAGAAACTCTATCAAAGTATTCGTTCAAATATTTCAATCACCGAGTTATTG
GGTGGTXXXXXXXXXXTTNCCAAANTAAAAAAAAAAAAAAAAACCAATAATAATNATTTT
TNCCNAAAAAAAAAAAGAATTAAAAAGAAAAAGATATTTTATTATAATAAATATTTAATT
ATAAATTATTAATATTTATAACTTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
FVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVIVRDEKYFHRLRWQY
MVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFIMPTFFDSHDE
FAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFMLRRIKRDVENEMPSKTEVEVYCNLT
HRQKKLYQSIRSNISITELLGG---

---XKXKKKKKTNNNXFXXKKKRIKKKKIFYYNKYLIINY*yl*lf
Translated Amino Acid sequence (All Frames) 
Frame A:
FVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVIVRDEKYFHRLRWQY
MVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFIMPTFFDSHDE
FAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFMLRRIKRDVENEMPSKTEVEVYCNLT
HRQKKLYQSIRSNISITELLGG---

---xpx*kkkkkpiixifxxkkkelkrkryfiiini*l*iiniynff

Frame B:
lyqhsr*fligvhnnnvlplenigiqrnciieihhstf*shrtm**yvmksisidyvgni
wywmklmlsrvqqvivgkl**vliveidsyslvhpfkivwlnfglyfislcqhslilmmn
lqsgsqriskimlchkvv*mninsivfi*f*nhsc*eelkem*rmkchqkqrlksivtll
ivkrnsikvfvqifqspsywv---

---xqxkkkkknq**xfxpkkkkn*kekdill**ifnykllifitf

Frame C:
ctsiqgnsllgyttttyyh*kileskeivs*kftiprfnhivqcdst**kvfp*itlaiy
gig*sscyqefsk*slensnef*l*k*tlthwythsk*yg*tlgftsfhyanil*fs**i
crvvlkgyrkscyvtrwfe*tstqsssydfetihvekn*krcre*naiknrg*sll*pys
ssketlskysfkyfnhrvigw---

---XKXKKKKKTNNNXFXXKKKRIKKKKIFYYNKYLIINY*yl*lf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR133 (CHR133Q) /CSM/CH/CHR1-B/CHR133Q.Seq.d/                       1201   0.0
AHF249 (AHF249Q) /CSM/AH/AHF2-C/AHF249Q.Seq.d/                       1047   0.0
AHP238 (AHP238Q) /CSM/AH/AHP2-B/AHP238Q.Seq.d/                       1021   0.0
AHH159 (AHH159Q) /CSM/AH/AHH1-C/AHH159Q.Seq.d/                       1013   0.0
CHN493 (CHN493Q) /CSM/CH/CHN4-D/CHN493Q.Seq.d/                        634   0.0
CHI260 (CHI260Q) /CSM/CH/CHI2-C/CHI260Q.Seq.d/                        502   e-141
SFH104 (SFH104Q) /CSM/SF/SFH1-A/SFH104Q.Seq.d/                        498   e-140
SHB273 (SHB273Q) /CSM/SH/SHB2-D/SHB273Q.Seq.d/                        488   e-137
SHA495 (SHA495Q) /CSM/SH/SHA4-D/SHA495Q.Seq.d/                        317   1e-85
AHA550 (AHA550Q) /CSM/AH/AHA5-C/AHA550Q.Seq.d/                        313   2e-84
own update 2004. 5.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CN533684|CN533684.1 UI-M-HO0-cpz-k-02-0-UI.r1 NIH_BMAP_HO0 Mus musculus cDNA clone IMAGE:30655249 5', mRNA sequence.    68   1e-23  3
CK637884|CK637884.1 UI-M-HO0-cnt-k-02-0-UI.r1 NIH_BMAP_HO0 Mus musculus cDNA clone IMAGE:30642193 5', mRNA sequence.    68   1e-23  3
CB519367|CB519367.1 UI-M-GH0-cef-m-08-0-UI.r1 NIH_BMAP_GH0 Mus musculus cDNA clone IMAGE: 6838929 5', mRNA sequence.    68   1e-23  3
BC061495|BC061495.1 Mus musculus RIKEN cDNA 4632409L19 gene, mRNA (cDNA clone MGC:70257 IMAGE:4947143), complete cds.    68   3e-22  3
AK129317|AK129317.1 Mus musculus mRNA for mKIAA1259 protein.       68   3e-22  3
BC059235|BC059235.1 Mus musculus RIKEN cDNA 4632409L19 gene, mRNA (cDNA clone IMAGE:6412685), partial cds.    68   4e-22  3
AR550321|AR550321.1 Sequence 5452 from patent US 6747137.          62   4e-19  5
CO432663|CO432663.1 UI-M-HX0-csi-c-13-0-UI.r1 NIH_BMAP_HX0 Mus musculus cDNA clone IMAGE:30687708 5', mRNA sequence.    68   8e-18  2
AL844862|AL844862.12 Mouse DNA sequence from clone RP23-355P22 on chromosome 2.    60   7e-17  3
BY713989|BY713989.1 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632409L19, 5' end partial sequence.    60   2e-15  2
dna update 2005.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q4PGL2) RecName: Full=Putative DNA helicase INO80;          EC=...   305   7e-82
AL929049_3(AL929049|pid:none) Zebrafish DNA sequence from clone ...   297   3e-79
AB033085_1(AB033085|pid:none) Homo sapiens mRNA for KIAA1259 pro...   296   6e-79
(Q9ULG1) RecName: Full=Putative DNA helicase INO80 complex homol...   296   6e-79
BC059235_1(BC059235|pid:none) Mus musculus INO80 complex homolog...   295   7e-79
AL844862_2(AL844862|pid:none) Mouse DNA sequence from clone RP23...   295   7e-79
AL137080_15(AL137080|pid:none) Arabidopsis thaliana DNA chromoso...   294   2e-78
CQ760234_1(CQ760234|pid:none) Sequence 1 from Patent WO2004003013.    294   2e-78
(Q6BGY8) RecName: Full=Putative DNA helicase INO80;          EC=...   292   6e-78
AY069786_1(AY069786|pid:none) Drosophila melanogaster SD02886 fu...   291   1e-77
protein update 2009. 4.12
PSORT 

 psg: 0.80  gvh: 0.28  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.06
 nuc: 0.50  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for CHR133 is nuc
5' end seq. ID CHR133F
5' end seq. 
>CHR133F.Seq
TTTGTACCAGCATTCAAGGTAATTCCTTATTGGGGTACACAACAACAACGTACTACCATT
AGAAAATATTGGAATCCAAAGAAATTGTATCATAGAAATTCACCATTCCACGTTTTAATC
ACATCGTACAATGTGATAGTACGTGATGAAAAGTATTTCCATAGATTACGTTGGCAATAT
ATGGTATTGGATGAAGCTCATGCTATCAAGAGTTCAGCAAGTAATCGTTGGAAAACTCTA
ATGAGTTTTAATTGTAGAAATAGACTCTTACTCACTGGTACACCCATTCAAAATAGTATG
GCTGAACTTTGGGCTTTACTTCATTTCATTATGCCAACATTCTTTGATTCTCATGATGAA
TTTGCAGAGTGGTTCTCAAAGGATATCGAAAATCATGCTATGTCACAAGGTGGTTTGAAT
GAACATCAACTCAATCGTCTTCATATGATTTTGAAACCATTCATGTTGAGAAGAATTAAA
AGAGATGTAGAGAATGAAATGCCATCAAAAACAGAGGTTGAAGTCTATTGTAACCTTACT
CATCGTCAAAAGAAACTCTATCAAAGTATTCGTTCAAATATTTCAATCACCGAGTTATTG
GGTGGTNNNNNNNNNN
Length of 5' end seq. 616
3' end seq. ID CHR133Z
3' end seq. 
>CHR133Z.Seq
NNNNNNNNNNTTNCCAAANTAAAAAAAAAAAAAAAAACCAATAATAATNATTTTTNCCNA
AAAAAAAAAAGAATTAAAAAGAAAAAGATATTTTATTATAATAAATATTTAATTATAAAT
TATTAATATTTATAACTTTTTT
Length of 3' end seq. 142
Connected seq. ID CHR133P
Connected seq. 
>CHR133P.Seq
TTTGTACCAGCATTCAAGGTAATTCCTTATTGGGGTACACAACAACAACGTACTACCATT
AGAAAATATTGGAATCCAAAGAAATTGTATCATAGAAATTCACCATTCCACGTTTTAATC
ACATCGTACAATGTGATAGTACGTGATGAAAAGTATTTCCATAGATTACGTTGGCAATAT
ATGGTATTGGATGAAGCTCATGCTATCAAGAGTTCAGCAAGTAATCGTTGGAAAACTCTA
ATGAGTTTTAATTGTAGAAATAGACTCTTACTCACTGGTACACCCATTCAAAATAGTATG
GCTGAACTTTGGGCTTTACTTCATTTCATTATGCCAACATTCTTTGATTCTCATGATGAA
TTTGCAGAGTGGTTCTCAAAGGATATCGAAAATCATGCTATGTCACAAGGTGGTTTGAAT
GAACATCAACTCAATCGTCTTCATATGATTTTGAAACCATTCATGTTGAGAAGAATTAAA
AGAGATGTAGAGAATGAAATGCCATCAAAAACAGAGGTTGAAGTCTATTGTAACCTTACT
CATCGTCAAAAGAAACTCTATCAAAGTATTCGTTCAAATATTTCAATCACCGAGTTATTG
GGTGGT----------TTNCCAAANTAAAAAAAAAAAAAAAAACCAATAATAATNATTTT
TNCCNAAAAAAAAAAAGAATTAAAAAGAAAAAGATATTTTATTATAATAAATATTTAATT
ATAAATTATTAATATTTATAACTTTTTT
Length of connected seq. 738
Full length Seq ID -
Full length Seq. -
Length of full length seq. -