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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR116
Library CH
(Link to library)
Clone ID CHR116
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16371-1
Original site URL
Representative seq. ID CHR116P
(Link to Original site)
Representative DNA sequence 
>CHR116 (CHR116Q) /CSM/CH/CHR1-A/CHR116Q.Seq.d/
GTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAA
AAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAAXXXXXXXXXXC
CCTACATGAAGAATCTTTCAATGGTAACTTGTGTCAAATTGATGAAACTCTTTGAATATC
TATCAACTCCAAGATTNTTATTCGCAACAAATCATAACTATCGTTATGTTGGCTTNTTAT
TGGAATCATTGAATAATCTATTACAACATCAATATGAAAGTAACACTCGTTTAATNTATG
CAATTNTTAGATGCCAAAATCAATTNTCAAAATTGGCTTACCTTAAAATTAGTCCTGTAA
CCCCTTCAAAACCAATGGAGCAAATCACTCAACCATCACCAATTTCAACCAGTGAAGAAG
CATTTGGTAAATTAAATAAACTTTCAATTTTTGAAGAACCATCAACATTATCAAATGAAA
AATNTGATAAAACTACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGG
TTCAAAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAACACCATCCTCAACAA
ATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAATCACCAA
AATTGGGTGGTGATGGTATAGACTNTCAATCATTCACCTCCATTATTCCTTCACACAAAT
ATTAAATTATTCCAAGTTAAACAATAAAAATAAAAAAGAAAAAAAAGAAATAAAGAAAAA
AAAAATTTTAAATAAAAGTAAATAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
i*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---PYMKNLSMVTCVKLMKLFEYLSTPRXLFATNHNYRYVGXLLESLNNLLQHQYESNTR
LXYAIXRCQNQXSKLAYLKISPVTPSKPMEQITQPSPISTSEEAFGKLNKLSIFEEPSTL
SNEKXDKTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQ
ESPKLGGDGIDXQSFTSIIPSHKY*iips*tikikkkkkk*rkkkf*ikvnk
Translated Amino Acid sequence (All Frames) 
Frame A:
vynqtieinsnlt*kk*knkkikikkkk*krkkkkk---

---PYMKNLSMVTCVKLMKLFEYLSTPRXLFATNHNYRYVGXLLESLNNLLQHQYESNTR
LXYAIXRCQNQXSKLAYLKISPVTPSKPMEQITQPSPISTSEEAFGKLNKLSIFEEPSTL
SNEKXDKTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQ
ESPKLGGDGIDXQSFTSIIPSHKY*iips*tikikkkkkk*rkkkf*ikvnk

Frame B:
yiikl*rsivi*hkknkkikk*k*krknkkekrkkk---

---pt*rifqw*lvsn**nslniyqlqdxysqqiitivmlaxywnh*iiyyninmkvtlv
*xmqxldakinxqnwltlklvl*plqnqwskslnhhqfqpvkkhlvn*infqflknhqhy
qmknxikllmvviikmnqfqsqrfkvnqllniqivlvqhhpqqiqehqlsklfqvqhqik
nhqnwvvmv*txnhspplflhtniklfqvkq*k*krkkrnkekknfk*k*ik

Frame C:
i*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---lheesfngnlcqidetl*isinskixirnks*lslcwlxigiie*sittsi*k*hsf
nxcnx*mpksixkiglp*n*scnpfktnganhstitnfnq*rsiw*ik*tfnf*rtinii
k*kx**ny*ww*ssr*infkvkgsk*tny*tsk*ywcntilnkfrntnyqsffkyntksr
itkigw*wyrlsiihlhysftqilnysklnnknkkekkeikkkkilnksk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR116 (CHR116Q) /CSM/CH/CHR1-A/CHR116Q.Seq.d/                       1199   0.0
AHL635 (AHL635Q) /CSM/AH/AHL6-B/AHL635Q.Seq.d/                       1187   0.0
CHO187 (CHO187Q) /CSM/CH/CHO1-D/CHO187Q.Seq.d/                       1178   0.0
CHR331 (CHR331Q) /CSM/CH/CHR3-B/CHR331Q.Seq.d/                       1088   0.0
AHQ475 (AHQ475Q) /CSM/AH/AHQ4-D/AHQ475Q.Seq.d/                       1039   0.0
CHL455 (CHL455Q) /CSM/CH/CHL4-C/CHL455Q.Seq.d/                       1009   0.0
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/                       1007   0.0
CHO747 (CHO747Q) /CSM/CH/CHO7-B/CHO747Q.Seq.d/                       1003   0.0
CHJ791 (CHJ791Q) /CSM/CH/CHJ7-D/CHJ791Q.Seq.d/                        989   0.0
AHR268 (AHR268Q) /CSM/AH/AHR2-C/AHR268Q.Seq.d/                        924   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DR703969|DR703969.1 Asn_03749 Aspergillus niger pBluescript (EcoRI-XhoI) Aspergillus niger cDNA clone Asn_03749, mRNA sequence.    46   1.1    1
BJ703075|BJ703075.1 Haplochromis sp. 'red tail sheller' cDNA clone:no565b07.    46   1.1    1
BJ702862|BJ702862.1 Haplochromis sp. 'red tail sheller' cDNA clone:no562e12.    46   1.1    1
BJ702102|BJ702102.1 Haplochromis sp. 'red tail sheller' cDNA clone:no556f08.    46   1.1    1
BJ701926|BJ701926.1 Haplochromis sp. 'red tail sheller' cDNA clone:no553f02.    46   1.1    1
BJ699644|BJ699644.1 Haplochromis sp. 'red tail sheller' cDNA clone:no525h01.    46   1.1    1
BJ699516|BJ699516.1 Haplochromis sp. 'red tail sheller' cDNA clone:no523c11.    46   1.1    1
BJ698111|BJ698111.1 Haplochromis sp. 'red tail sheller' cDNA clone:no599f07.    46   1.1    1
BJ691654|BJ691654.1 Haplochromis sp. 'red tail sheller' cDNA clone:no516a04.    46   1.1    1
BJ690967|BJ690967.1 Haplochromis sp. 'red tail sheller' cDNA clone:no600c04.    46   1.1    1
dna update 2005.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A...    72   2e-11
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet...    72   2e-11
AK074401_1(AK074401|pid:none) Homo sapiens cDNA FLJ23821 fis, cl...    72   3e-11
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI...    71   3e-11
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho...    71   3e-11
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ...    71   3e-11
(O13776) RecName: Full=UPF0663 protein C17A5.16; AltName: Full=D...    64   4e-09
AY070228_1(AY070228|pid:none) Caenorhabditis elegans HID-1 (hid-...    64   4e-09
U40942_6(U40942|pid:none) Caenorhabditis elegans cosmid K02E10, ...    64   4e-09
AE013599_1507(AE013599|pid:none) Drosophila melanogaster chromos...    64   7e-09
protein update 2009. 4.12
PSORT 

 psg: 0.33  gvh: 0.47  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHR116 is cyt
5' end seq. ID CHR116F
5' end seq. 
>CHR116F.Seq
GTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAA
AAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 119
3' end seq. ID CHR116Z
3' end seq. 
>CHR116Z.Seq
NNNNNNNNNNCCCTACATGAAGAATCTTTCAATGGTAACTTGTGTCAAATTGATGAAACT
CTTTGAATATCTATCAACTCCAAGATTNTTATTCGCAACAAATCATAACTATCGTTATGT
TGGCTTNTTATTGGAATCATTGAATAATCTATTACAACATCAATATGAAAGTAACACTCG
TTTAATNTATGCAATTNTTAGATGCCAAAATCAATTNTCAAAATTGGCTTACCTTAAAAT
TAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACTCAACCATCACCAATTTCAAC
CAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATTTTTGAAGAACCATCAACATT
ATCAAATGAAAAATNTGATAAAACTACTGATGGTGGTGATCATCAAGATGAATCAATTTC
AAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAACACC
ATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCA
AGAATCACCAAAATTGGGTGGTGATGGTATAGACTNTCAATCATTCACCTCCATTATTCC
TTCACACAAATATTAAATTATTCCAAGTTAAACAATAAAAATAAAAAAGAAAAAAAAGAA
ATAAAGAAAAAAAAAATTTTAAATAAAAGTAAATAAAA
Length of 3' end seq. 698
Connected seq. ID CHR116P
Connected seq. 
>CHR116P.Seq
GTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAA
AAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAA----------C
CCTACATGAAGAATCTTTCAATGGTAACTTGTGTCAAATTGATGAAACTCTTTGAATATC
TATCAACTCCAAGATTNTTATTCGCAACAAATCATAACTATCGTTATGTTGGCTTNTTAT
TGGAATCATTGAATAATCTATTACAACATCAATATGAAAGTAACACTCGTTTAATNTATG
CAATTNTTAGATGCCAAAATCAATTNTCAAAATTGGCTTACCTTAAAATTAGTCCTGTAA
CCCCTTCAAAACCAATGGAGCAAATCACTCAACCATCACCAATTTCAACCAGTGAAGAAG
CATTTGGTAAATTAAATAAACTTTCAATTTTTGAAGAACCATCAACATTATCAAATGAAA
AATNTGATAAAACTACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGG
TTCAAAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAACACCATCCTCAACAA
ATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAATCACCAA
AATTGGGTGGTGATGGTATAGACTNTCAATCATTCACCTCCATTATTCCTTCACACAAAT
ATTAAATTATTCCAAGTTAAACAATAAAAATAAAAAAGAAAAAAAAGAAATAAAGAAAAA
AAAAATTTTAAATAAAAGTAAATAAAA
Length of connected seq. 797
Full length Seq ID -
Full length Seq. -
Length of full length seq. -