>CHR107 (CHR107Q) /CSM/CH/CHR1-A/CHR107Q.Seq.d/
XXXXXXXXXXTACCAAGGGCCAATTTCCAAGAGATTGAAGATTCCTATAAAAAAGCAAAG
GTTAGAGTTTTCTTTTTGGATTATGATGGTACTTTAACACCATTGGTTCGTCTTCCAAGT
CAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAAGTAAACTAACAGAAGATAGAAGA
AATGAGGTTTACGTAATCAGTGGAAGAGATCGTTCGTCATTGGAGAAGTGGTTAGGTCAT
TTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCACAAGACAACCTGGTGAAAATCAA
CCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGAAAGACACAGTTTTATCAATAATG
CAAGATTTTGAAGATAGAACACCAGGTTCAATGACAGAAACTAAACAAGTCAATATCACA
TGGCATTATAGAAATGCTGATCCAGACTTTGGTCAATTCCAAGCTAAAGAATTGATTGCA
CAACTTCGTTCAGTCGCAAATAAATACCCATTGGATATTTTATCAGGAAAGAAAGCAATT
GAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAGTAAAAATGATCCTTCAAAAGATT
GATGCAGATTTCATACTTTGTATTGGTGATGATAAAACTGATGAAGATATGTTTAAAGCA
CTTTATAATGTACCATCATTTACAATTCGTG

---PRANFQEIEDSYKKAKVRVFFLDYDGTLTPLVRLPSQAMPSKQLIDVLSKLTEDRRN
EVYVISGRDRSSLEKWLGHLPIGMSCEHGVFTRQPGENQPWTESPNAEVQWKDTVLSIMQ
DFEDRTPGSMTETKQVNITWHYRNADPDFGQFQAKELIAQLRSVANKYPLDILSGKKAIE
VKPIGINKGEIVKMILQKIDADFILCIGDDKTDEDMFKALYNVPSFTIR

Frame A:
---tkgqfprd*rfl*kskg*sflfgl*wyfntigssskssnaikain*cfk*tnrr*kk
*glrnqwkrsfvigevvrsftnwyvl*twrfhkttw*kstmd*kskcrssmerhsfinna
rf*r*ntrfndrn*tsqyhmal*kc*srlwsips*ridcttsfsrk*ipigyfirkesn*
s*tnryq*r*nskndpskd*crfhtlyw***n**ryv*stl*ctiiyns


Frame B:
---PRANFQEIEDSYKKAKVRVFFLDYDGTLTPLVRLPSQAMPSKQLIDVLSKLTEDRRN
EVYVISGRDRSSLEKWLGHLPIGMSCEHGVFTRQPGENQPWTESPNAEVQWKDTVLSIMQ
DFEDRTPGSMTETKQVNITWHYRNADPDFGQFQAKELIAQLRSVANKYPLDILSGKKAIE
VKPIGINKGEIVKMILQKIDADFILCIGDDKTDEDMFKALYNVPSFTIR


Frame C:
---qgpiskrlkipikkqrlefsfwimmvl*hhwfvfqvkqchqsn*lmf*vn*qkieem
rft*sveeivrhwrsg*viyqlvclvnmafsqdnlvkinhglkvqmqkfngktqfyq*ck
ilkiehqvq*qklnksishgiiemliqtlvnsklkn*lhnfvqsqinthwifyqerkqlk
lnq*vsikvk**k*sfkrlmqisyfvlvmiklmkiclkhfimyhhlqfv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR107 (CHR107Q) /CSM/CH/CHR1-A/CHR107Q.Seq.d/                       1350   0.0
CHL374 (CHL374Q) /CSM/CH/CHL3-D/CHL374Q.Seq.d/                       1251   0.0
AHO176 (AHO176Q) /CSM/AH/AHO1-D/AHO176Q.Seq.d/                       1223   0.0
CHG423 (CHG423Q) /CSM/CH/CHG4-A/CHG423Q.Seq.d/                       1185   0.0
VHQ123 (VHQ123Q) /CSM/VH/VHQ1-A/VHQ123Q.Seq.d/                       1164   0.0
SHE467 (SHE467Q) /CSM/SH/SHE4-C/SHE467Q.Seq.d/                       1160   0.0
AHB860 (AHB860Q) /CSM/AH/AHB8-C/AHB860Q.Seq.d/                       1148   0.0
CHG693 (CHG693Q) /CSM/CH/CHG6-D/CHG693Q.Seq.d/                       1142   0.0
CHP648 (CHP648Q) /CSM/CH/CHP6-B/CHP648Q.Seq.d/                       1140   0.0
AHI533 (AHI533Q) /CSM/AH/AHI5-B/AHI533Q.Seq.d/                       1138   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z99167|Z99167.1 S.pombe chromosome I cosmid c3G6.                  46   4e-04  2
CF609616|CF609616.1 INFIO01_000425 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    42   0.002  3
CO364472|CO364472.1 RTK1_15_H07.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_15_H07_A029 5', mRNA sequence.    38   0.004  3
AE016828|AE016828.2 Coxiella burnetii RSA 493, complete genome.    52   0.016  1
AF208030|AF208030.1 Zygosaccharomyces rouxii trehalose-6-phosphate phosphatase (TPS2) mRNA, complete cds.    36   0.042  3
AJ242743|AJ242743.1 Schizosaccharomyces pombe tpp1+ gene for trehalose-6P phosphatase,  exon 1.    50   0.062  1
Z97209|Z97209.1 S.pombe chromosome I cosmid c19G12.                50   0.062  1
L40359|L40359.1 Schizosaccharomyces pombe phosphatidate phosphatase (TPP) mRNA, partial cds.    50   0.062  1
D89225|D89225.1 Schizosaccharomyces pombe mRNA, partial cds, clone: SY 1342.    50   0.062  1
DT462516|DT462516.1 GH_CHX12D08.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX12D08 3', mRNA sequence.    48   0.24   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NU9) RecName: Full=Alpha,alpha-trehalose-phosphate synthase ...   460   e-128
AE017342_262(AE017342|pid:none) Cryptococcus neoformans var. neo...   209   8e-53
EU399552_1(EU399552|pid:none) Cryptococcus gattii isolate R265TP...   209   8e-53
CR382130_585(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   204   2e-51
DQ407640_1(DQ407640|pid:none) Acanthamoeba castellanii trehalose...   204   2e-51
CP000500_340(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...   195   9e-49
CR380953_221(CR380953|pid:none) Candida glabrata strain CBS138 c...   193   3e-48
D89225_1(D89225|pid:none) Schizosaccharomyces pombe mRNA, partia...   193   5e-48
CR382139_531(CR382139|pid:none) Debaryomyces hansenii strain CBS...   193   5e-48
(P78875) RecName: Full=Trehalose-phosphatase;          EC=3.1.3....   193   5e-48

 psg: 0.75  gvh: 0.54  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHR107 is cyt

>CHR107Z.Seq
NNNNNNNNNNTACCAAGGGCCAATTTCCAAGAGATTGAAGATTCCTATAAAAAAGCAAAG
GTTAGAGTTTTCTTTTTGGATTATGATGGTACTTTAACACCATTGGTTCGTCTTCCAAGT
CAAGCAATGCCATCAAAGCAATTAATTGATGTTTTAAGTAAACTAACAGAAGATAGAAGA
AATGAGGTTTACGTAATCAGTGGAAGAGATCGTTCGTCATTGGAGAAGTGGTTAGGTCAT
TTACCAATTGGTATGTCTTGTGAACATGGCGTTTTCACAAGACAACCTGGTGAAAATCAA
CCATGGACTGAAAGTCCAAATGCAGAAGTTCAATGGAAAGACACAGTTTTATCAATAATG
CAAGATTTTGAAGATAGAACACCAGGTTCAATGACAGAAACTAAACAAGTCAATATCACA
TGGCATTATAGAAATGCTGATCCAGACTTTGGTCAATTCCAAGCTAAAGAATTGATTGCA
CAACTTCGTTCAGTCGCAAATAAATACCCATTGGATATTTTATCAGGAAAGAAAGCAATT
GAAGTTAAACCAATAGGTATCAATAAAGGTGAAATAGTAAAAATGATCCTTCAAAAGATT
GATGCAGATTTCATACTTTGTATTGGTGATGATAAAACTGATGAAGATATGTTTAAAGCA
CTTTATAATGTACCATCATTTACAATTCGTG