>CHR104 (CHR104Q) /CSM/CH/CHR1-A/CHR104Q.Seq.d/
GTATTGACTCGTGTTCAACAATAAACAGAAGAAAGATGTCAACATTAAAGAATAAAAAGC
TAATACAAATAGAAGGGGAGATTGAAAAAGCAAGACAAGATAAAAATTGGAATGCTTTAA
CCGATTTAATTAGAAAATATAATAAATTAAATACAGATAATACAGTACCACTTGAATTAT
TAATAAATAGTGAGAAATATTTAACAGAATTTGATTATAACAATGCATTGGCAACATTGA
ATAAAGCATATAATATAGCACCAAATAATTCAGAAGTACTTTCATATTTAGGTATTGTTG
AATATGAAAGAAATGATATAGTTAAAGCATTATCATATCTTAATCGTTTAAATAATCCAT
ATGGTAATAATGAAAATGGTAATGGTAATGGTAATGGTAGTGGTAATGATATGATTTTAA
ATAATCGTAAAGTTGGTTTATTAATTCAAGCATTTACAATCAAAGGTAAATGTTATGAAA
ATCAAGGTAATCAACAAGATGCAATCACAAGTTATCAAAATGTTTATCAAATCACTTTTA
AATATTTTAAAAATTTTAAAACAATTGATAAACAAACTAAATTATATATTGAAGATTCTT
TAATTAXXXXXXXXXXTTTAGTTTCAAAAACTTTAACTTCAAATGAAGATATTGATGATT
CAGTTAGTTTATCAAGAAATAGACAATCTGGACCAAGTAGTGTTGTATCATTTGATTTAA
GATCAGGTACAACAGCTGGTGATAGTAGATCACATAGATCTTATTCAATTAATAATGCAG
AGATGGATTCAGCAATGAGAGACTTTGAAGATAGTCCTACAAGTCCAAAAGATTTATTAA
GAACTACAACAAATAGTAGTAGTAGTGGAGTAAATGGCGGTAATAGTGGTGGTGGTGGCA
GTAGTGGTGGTCATTGTTTATCAAGTAAAGAAGTTCATAGAAATATTGCATTATGGTTAT
CATTAGCAGAAGCATTCACTCAACAACGTATGTTTAAAGATGCGGCTCAATGTTTAGCAC
AAGCTGAATCAATCGATAATGATTCAGCCGATGTTTATTATCATCAAGGTTATCTATTGG
AAACTCAAGATTTAATGGGAAAAGCAATTGCAAACTATCATAAAGCTTTAACTATTGATT
CAACTCATACAAATAGTTCAATTCGTTTAGCTCTTTATTACTTTAGAGAGAATGATTTAT
TATTAGCTGAAAATAATCTCACTACAATCTTACGTTCTAGTGATCCAACTTCACATCAAG
CTTGGTTTCAATTAGGTTTAGTTTTAAAAGCTAAAGGTGAAATCGAACGTTCCTCTGATT
GTTTTAAAAAGGCAATCGAATTGGATAGTACTTCTCCTTTAATTCCATACAGTCAAATCT
CAAGATTGTATTCTAAAAA

IDSCSTINRRKMSTLKNKKLIQIEGEIEKARQDKNWNALTDLIRKYNKLNTDNTVPLELL
INSEKYLTEFDYNNALATLNKAYNIAPNNSEVLSYLGIVEYERNDIVKALSYLNRLNNPY
GNNENGNGNGNGSGNDMILNNRKVGLLIQAFTIKGKCYENQGNQQDAITSYQNVYQITFK
YFKNFKTIDKQTKLYIEDSLI---

---LVSKTLTSNEDIDDSVSLSRNRQSGPSSVVSFDLRSGTTAGDSRSHRSYSINNAEMD
SAMRDFEDSPTSPKDLLRTTTNSSSSGVNGGNSGGGGSSGGHCLSSKEVHRNIALWLSLA
EAFTQQRMFKDAAQCLAQAESIDNDSADVYYHQGYLLETQDLMGKAIANYHKALTIDSTH
TNSSIRLALYYFRENDLLLAENNLTTILRSSDPTSHQAWFQLGLVLKAKGEIERSSDCFK
KAIELDSTSPLIPYSQISRLYSK

Frame A:
vltrvqq*teercqh*riks*yk*kgrlkkqdkikigml*pi*leniin*iqiiqyhlny
**ivrni*qnliitmhwqh*ikhii*hqiiqkyfhi*vllnmkemi*lkhyhiliv*iih
mvimkmvmvmvmvvvmi*f*iivklvy*fkhlqskvnvmkikvinkmqsqvikmfiksll
nilkilkqlinklnyilkil*l---

---fsfknfnfk*ry**fs*fikk*tiwtk*ccii*fkirynsw***it*ilfn**crdg
fsnerl*r*sykskrfiknynk****wskwr**wwwwq*wwslfik*rss*kycimviis
rsihsttyv*rcgsmfsts*inr**fsrcllssrlsignsrfngksnckls*sfny*fns
yk*fnsfsslll*re*fiis*k*shynltf**snftsslvsirfsfks*r*nrtfl*lf*
kgnrig*yfsfnsiqsnlkivf*k

Frame B:
y*lvfnnkqkkdvnike*kantnrrgd*ksktr*klecfnrfn*ki**ikyr*ystt*ii
nk**eifnri*l*qcignie*si*ystk*frstfifryc*i*kk*ys*siiis*sfk*si
w***kw*w*w*w*w**ydfk*s*swfinssiynqr*ml*ksr*strcnhklskclsnhf*
if*kf*nn**tn*iiy*rffn---

---LVSKTLTSNEDIDDSVSLSRNRQSGPSSVVSFDLRSGTTAGDSRSHRSYSINNAEMD
SAMRDFEDSPTSPKDLLRTTTNSSSSGVNGGNSGGGGSSGGHCLSSKEVHRNIALWLSLA
EAFTQQRMFKDAAQCLAQAESIDNDSADVYYHQGYLLETQDLMGKAIANYHKALTIDSTH
TNSSIRLALYYFRENDLLLAENNLTTILRSSDPTSHQAWFQLGLVLKAKGEIERSSDCFK
KAIELDSTSPLIPYSQISRLYSK

Frame C:
IDSCSTINRRKMSTLKNKKLIQIEGEIEKARQDKNWNALTDLIRKYNKLNTDNTVPLELL
INSEKYLTEFDYNNALATLNKAYNIAPNNSEVLSYLGIVEYERNDIVKALSYLNRLNNPY
GNNENGNGNGNGSGNDMILNNRKVGLLIQAFTIKGKCYENQGNQQDAITSYQNVYQITFK
YFKNFKTIDKQTKLYIEDSLI---

---*fqkl*lqmkilmiqlvyqeidnldqvvlyhli*dqvqqlvivdhidliqlimqrwi
qq*etlkivlqvqkiy*elqqivvvve*mavivvvvavvvvivyqvkkfieilhygyh*q
khslnnvclkmrlnv*hklnqsimiqpmfiiikviywklki*wekqlqtiikl*lliqli
qivqfv*lfitlermiyy*lkiislqsyvlviqlhiklgfn*v*f*klkvksnvplivlk
rqsnwivlll*fhtvksqdcilk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR104 (CHR104Q) /CSM/CH/CHR1-A/CHR104Q.Seq.d/                       1905   0.0
AHL167 (AHL167Q) /CSM/AH/AHL1-C/AHL167Q.Seq.d/                       1524   0.0
CHF888 (CHF888Q) /CSM/CH/CHF8-D/CHF888Q.Seq.d/                       1522   0.0
AHQ419 (AHQ419Q) /CSM/AH/AHQ4-A/AHQ419Q.Seq.d/                       1520   0.0
VHN261 (VHN261Q) /CSM/VH/VHN2-C/VHN261Q.Seq.d/                       1453   0.0
AHO863 (AHO863Q) /CSM/AH/AHO8-C/AHO863Q.Seq.d/                       1433   0.0
SHL618 (SHL618Q) /CSM/SH/SHL6-A/SHL618Q.Seq.d/                       1429   0.0
AHQ761 (AHQ761Q) /CSM/AH/AHQ7-C/AHQ761Q.Seq.d/                       1411   0.0
AHN624 (AHN624Q) /CSM/AH/AHN6-A/AHN624Q.Seq.d/                       1411   0.0
AHE727 (AHE727Q) /CSM/AH/AHE7-B/AHE727Q.Seq.d/                       1411   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   3e-05  18
AP006309|AP006309.1 Homo sapiens genomic DNA, chromosome 3 clone:RP11-39I4, complete sequence.    48   1e-04  2
AC146997|AC146997.2 Arbacia punctulata clone BAP-144G2, WORKING DRAFT SEQUENCE, 13 unordered pieces.    44   1e-04  2
AE015944|AE015944.1 Clostridium tetani E88, section 9 of 10 of the complete genome.    34   0.001  15
AC117883|AC117883.5 Rattus norvegicus clone CH230-101A3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    30   0.001  3
AC110633|AC110633.4 Rattus norvegicus clone CH230-262J17, *** SEQUENCING IN PROGRESS ***, 104 unordered pieces.    40   0.001  2
AC110516|AC110516.6 Mus musculus clone RP23-203M17, WORKING DRAFT SEQUENCE, 10 ordered pieces.    44   0.001  2
AC026840|AC026840.4 Homo sapiens chromosome 15 clone RP11-526M10 map 15, WORKING DRAFT SEQUENCE, 11 unordered pieces.    46   0.001  2
BX000350|BX000350.4 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-156M10.    44   0.001  2
BX247872|BX247872.12 Zebrafish DNA sequence from clone CH211-223M9.    44   0.001  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008209_648(AP008209|pid:none) Oryza sativa (japonica cultivar-...    89   5e-16
BT060530_1(BT060530|pid:none) Zea mays full-length cDNA clone ZM...    84   9e-15
BT037015_1(BT037015|pid:none) Zea mays full-length cDNA clone ZM...    84   9e-15
BC111487_1(BC111487|pid:none) Homo sapiens tetratricopeptide rep...    84   2e-14
BC114365_1(BC114365|pid:none) Homo sapiens tetratricopeptide rep...    84   2e-14
AL834383_1(AL834383|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0...    84   2e-14
AB032966_1(AB032966|pid:none) Homo sapiens mRNA for KIAA1140 pro...    84   2e-14
BC027457_1(BC027457|pid:none) Homo sapiens tetratricopeptide rep...    84   2e-14
BC035708_1(BC035708|pid:none) Homo sapiens tetratricopeptide rep...    84   2e-14
AK056464_1(AK056464|pid:none) Homo sapiens cDNA FLJ31902 fis, cl...    84   2e-14

 psg: 0.51  gvh: 0.26  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHR104 is nuc

>CHR104F.Seq
GTATTGACTCGTGTTCAACAATAAACAGAAGAAAGATGTCAACATTAAAGAATAAAAAGC
TAATACAAATAGAAGGGGAGATTGAAAAAGCAAGACAAGATAAAAATTGGAATGCTTTAA
CCGATTTAATTAGAAAATATAATAAATTAAATACAGATAATACAGTACCACTTGAATTAT
TAATAAATAGTGAGAAATATTTAACAGAATTTGATTATAACAATGCATTGGCAACATTGA
ATAAAGCATATAATATAGCACCAAATAATTCAGAAGTACTTTCATATTTAGGTATTGTTG
AATATGAAAGAAATGATATAGTTAAAGCATTATCATATCTTAATCGTTTAAATAATCCAT
ATGGTAATAATGAAAATGGTAATGGTAATGGTAATGGTAGTGGTAATGATATGATTTTAA
ATAATCGTAAAGTTGGTTTATTAATTCAAGCATTTACAATCAAAGGTAAATGTTATGAAA
ATCAAGGTAATCAACAAGATGCAATCACAAGTTATCAAAATGTTTATCAAATCACTTTTA
AATATTTTAAAAATTTTAAAACAATTGATAAACAAACTAAATTATATATTGAAGATTCTT
TAATTANNNNNNNNNN

>CHR104Z.Seq
NNNNNNNNNNTTTAGTTTCAAAAACTTTAACTTCAAATGAAGATATTGATGATTCAGTTA
GTTTATCAAGAAATAGACAATCTGGACCAAGTAGTGTTGTATCATTTGATTTAAGATCAG
GTACAACAGCTGGTGATAGTAGATCACATAGATCTTATTCAATTAATAATGCAGAGATGG
ATTCAGCAATGAGAGACTTTGAAGATAGTCCTACAAGTCCAAAAGATTTATTAAGAACTA
CAACAAATAGTAGTAGTAGTGGAGTAAATGGCGGTAATAGTGGTGGTGGTGGCAGTAGTG
GTGGTCATTGTTTATCAAGTAAAGAAGTTCATAGAAATATTGCATTATGGTTATCATTAG
CAGAAGCATTCACTCAACAACGTATGTTTAAAGATGCGGCTCAATGTTTAGCACAAGCTG
AATCAATCGATAATGATTCAGCCGATGTTTATTATCATCAAGGTTATCTATTGGAAACTC
AAGATTTAATGGGAAAAGCAATTGCAAACTATCATAAAGCTTTAACTATTGATTCAACTC
ATACAAATAGTTCAATTCGTTTAGCTCTTTATTACTTTAGAGAGAATGATTTATTATTAG
CTGAAAATAATCTCACTACAATCTTACGTTCTAGTGATCCAACTTCACATCAAGCTTGGT
TTCAATTAGGTTTAGTTTTAAAAGCTAAAGGTGAAATCGAACGTTCCTCTGATTGTTTTA
AAAAGGCAATCGAATTGGATAGTACTTCTCCTTTAATTCCATACAGTCAAATCTCAAGAT
TGTATTCTAAAAA

>CHR104P.Seq
GTATTGACTCGTGTTCAACAATAAACAGAAGAAAGATGTCAACATTAAAGAATAAAAAGC
TAATACAAATAGAAGGGGAGATTGAAAAAGCAAGACAAGATAAAAATTGGAATGCTTTAA
CCGATTTAATTAGAAAATATAATAAATTAAATACAGATAATACAGTACCACTTGAATTAT
TAATAAATAGTGAGAAATATTTAACAGAATTTGATTATAACAATGCATTGGCAACATTGA
ATAAAGCATATAATATAGCACCAAATAATTCAGAAGTACTTTCATATTTAGGTATTGTTG
AATATGAAAGAAATGATATAGTTAAAGCATTATCATATCTTAATCGTTTAAATAATCCAT
ATGGTAATAATGAAAATGGTAATGGTAATGGTAATGGTAGTGGTAATGATATGATTTTAA
ATAATCGTAAAGTTGGTTTATTAATTCAAGCATTTACAATCAAAGGTAAATGTTATGAAA
ATCAAGGTAATCAACAAGATGCAATCACAAGTTATCAAAATGTTTATCAAATCACTTTTA
AATATTTTAAAAATTTTAAAACAATTGATAAACAAACTAAATTATATATTGAAGATTCTT
TAATTA----------TTTAGTTTCAAAAACTTTAACTTCAAATGAAGATATTGATGATT
CAGTTAGTTTATCAAGAAATAGACAATCTGGACCAAGTAGTGTTGTATCATTTGATTTAA
GATCAGGTACAACAGCTGGTGATAGTAGATCACATAGATCTTATTCAATTAATAATGCAG
AGATGGATTCAGCAATGAGAGACTTTGAAGATAGTCCTACAAGTCCAAAAGATTTATTAA
GAACTACAACAAATAGTAGTAGTAGTGGAGTAAATGGCGGTAATAGTGGTGGTGGTGGCA
GTAGTGGTGGTCATTGTTTATCAAGTAAAGAAGTTCATAGAAATATTGCATTATGGTTAT
CATTAGCAGAAGCATTCACTCAACAACGTATGTTTAAAGATGCGGCTCAATGTTTAGCAC
AAGCTGAATCAATCGATAATGATTCAGCCGATGTTTATTATCATCAAGGTTATCTATTGG
AAACTCAAGATTTAATGGGAAAAGCAATTGCAAACTATCATAAAGCTTTAACTATTGATT
CAACTCATACAAATAGTTCAATTCGTTTAGCTCTTTATTACTTTAGAGAGAATGATTTAT
TATTAGCTGAAAATAATCTCACTACAATCTTACGTTCTAGTGATCCAACTTCACATCAAG
CTTGGTTTCAATTAGGTTTAGTTTTAAAAGCTAAAGGTGAAATCGAACGTTCCTCTGATT
GTTTTAAAAAGGCAATCGAATTGGATAGTACTTCTCCTTTAATTCCATACAGTCAAATCT
CAAGATTGTATTCTAAAAA