CHR103
Library CH
(Link to library)
Clone ID CHR103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15690-1
Original site URL
Representative seq. ID CHR103P
(Link to Original site)
Representative DNA sequence
>CHR103 (CHR103Q) /CSM/CH/CHR1-A/CHR103Q.Seq.d/
AATAGTATTAATGTAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGT
ACAAAAGAAAATGTATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATG
GAACCAAAATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGT
GGAGTATTTCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCA
TATATGTCAACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAAT
CTTCATAAACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATT
AATCCAAAGAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATG
AAACATGGTGAGAGATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTC
TTTGGATTCAAAACATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAG
CGTCCACAACACATGTTGATGCGTGTCTCCATTGGTATCXXXXXXXXXXTCGATGTTTTA
AACAAGGGCTCGTCAAGCTGATCCATCTTNGGAGCCAGAAATCAAAAAGAATCCTTGATA
ACCTCAAAAAACTTGAAGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCC
TCAAGGCAGTCGCACTCGAAAGTAGTTAATCGTGCTGAAATTCGGAACAACAAAAGAAGG
AGAAACAAAGATTAACCACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACG
AACANATCGCTCAATACAATCAATACCTCCAAGATTGTCGTCTCAAACATNATCAAAACA
AGAGCAAAAAGAAGAAGAAGGGAGATGGTGCCNAAGTTGGTCCTTTCNAATTCAGTTTCA
GCGAACTTCACAAGAAAGAGTGTCATCGTCGACTCTGAAGTTCCTCAAATCCCCAGAAAG
AAGATTAAATTTGTCATTAGCTCTGATCCCGTTGGTGTGTTTNATGTCTCTGCTAAAATG
GCTGGTATCGATGTTCAAACTATGCGTTTNNAACTTGATGGCCTTTTAGAACTCAATTCA
ATCGGCACCACAACTTTAGAATTAGATCAAATCACTTCAGATGTTAATATGACCATACAT
TTATTAAACAAACTT
sequence update 2002.10.25
Translated Amino Acid sequence
NSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVS
GVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFI
NPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVE
RPQHMLMRVSIGI---

---RCFKQGLVKLIHLXSQKSKRILDNLKKLEEYNLTTSADNYSSFLKAVALESS*sc*n
seqqkkekqrlttslnnlrkhqkylnexiaqynqylqdcrlkhxqnkskkkkkgdgaxvg
pfxfsfselhkkechrrl*sssnpqked*ich*l*srwcvxclc*ngwyrcsnyafxt*w
pfrtqfnrhhnfrirsnhfrc*ydhtfikqt


Translated Amino Acid sequence (All Frames)
Frame A:
NSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVS
GVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFI
NPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVE
RPQHMLMRVSIGI---

---smf*trarqadpsxepeikknp**pqkt*ri*shhlcr*lflfpqgsrtrk*livlk
fgttkegetkinhlfe*ss*tskisqrtxrsiqsipprlssqtxskqeqkeeegrwcxsw
sfxiqfqrtsqervssstlkflksperrlnlslaliplvcxmsllkwlvsmfklcvxnlm
af*nsiqsapql*n*ikslqmli*pyiy*tn

Frame B:
ivlm*lqiksqrcml*kemvqkkmyhliklhqefhfyvkwnqn*iqi*liqlk*hkk*lv
eyfqv*rlqnwiiwqprqqhicqhviqimvfwqhvlvyrifinklqrvl*rqlrnnmnsl
iqraiywhhwsarssmks**nmvrdwrvsliiivisitisldskhwnvpifivsmvklss
vhntc*cvsplv---

---RCFKQGLVKLIHLXSQKSKRILDNLKKLEEYNLTTSADNYSSFLKAVALESS*sc*n
seqqkkekqrlttslnnlrkhqkylnexiaqynqylqdcrlkhxqnkskkkkkgdgaxvg
pfxfsfselhkkechrrl*sssnpqked*ich*l*srwcvxclc*ngwyrcsnyafxt*w
pfrtqfnrhhnfrirsnhfrc*ydhtfikqt

Frame C:
*y*cnsk*rvkdvcckkrwykrkcii**nyiknfifm*ngtkikfrys*sn*sstkss*w
sisrckdyrig*fgsrdssiyvntssrlwyfgsty*ciess*tnfkefcrds*eti*ih*
skeqfigtigqqgal*nrnetw*eigech*lls*frlrflwiqnigtflsssyqw*ncra
stthvdaclhwy---

---dvlnkgsss*sixgarnqkeslitsknlkniispplpiiiplssrqshskvvnraei
rnnkrrrnkd*ppl*iifvniknistnxslntintskivvsnxiktrakrrrremvpklv
lsnsvsanftrksvivdsevpqiprkkikfvissdpvgvfxvsakmagidvqtmrxxldg
llelnsigtttleldqitsdvnmtihllnkl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR103 (CHR103Q) /CSM/CH/CHR1-A/CHR103Q.Seq.d/ 2302 0.0
VHP195 (VHP195Q) /CSM/VH/VHP1-D/VHP195Q.Seq.d/ 1148 0.0
VHC688 (VHC688Q) /CSM/VH/VHC6-D/VHC688Q.Seq.d/ 1148 0.0
SHI114 (SHI114Q) /CSM/SH/SHI1-A/SHI114Q.Seq.d/ 1148 0.0
SHH692 (SHH692Q) /CSM/SH/SHH6-D/SHH692Q.Seq.d/ 1148 0.0
SHE541 (SHE541Q) /CSM/SH/SHE5-B/SHE541Q.Seq.d/ 1148 0.0
SHC208 (SHC208Q) /CSM/SH/SHC2-A/SHC208Q.Seq.d/ 1148 0.0
SHA878 (SHA878Q) /CSM/SH/SHA8-D/SHA878Q.Seq.d/ 1148 0.0
SHA466 (SHA466Q) /CSM/SH/SHA4-C/SHA466Q.Seq.d/ 1148 0.0
CHN622 (CHN622Q) /CSM/CH/CHN6-A/CHN622Q.Seq.d/ 1148 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L75794|L75794.1 Dictyostelium discoideum RasGTPase-activating protein gene, complete cds. 410 0.0 6
U81156|U81156.1 Dictyostelium discoideum RasGAP1 (rgaA) gene, complete cds. 410 0.0 6
Z19158|Z19158.1 Caenorhabditis elegans Cosmid T23G5. 48 5e-07 2
BJ755413|BJ755413.1 Caenorhabditis elegans cDNA clone:yk1413f02 : 5' end. 48 5e-07 2
BJ807707|BJ807707.1 Caenorhabditis elegans cDNA clone:yk1677a06 : 5' end. 48 5e-07 2
BJ112828|BJ112828.1 Caenorhabditis elegans cDNA clone:yk1160g04 : 5' end, single read. 48 5e-07 2
AU202763|AU202763.1 Caenorhabditis elegans cDNA clone:yk812d04 : 5' end, single read. 48 5e-07 2
BJ764261|BJ764261.1 Caenorhabditis elegans cDNA clone:yk1609c08 : 5' end. 48 5e-07 2
BJ800683|BJ800683.1 Caenorhabditis elegans cDNA clone:yk1440e10 : 5' end. 48 5e-07 2
BJ766478|BJ766478.1 Caenorhabditis elegans cDNA clone:yk1647b10 : 5' end. 48 5e-07 2
dna update 2005.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg... 347 4e-94
U81156_1(U81156|pid:none) Dictyostelium discoideum RasGAP1 (rgaA... 168 4e-77
S34807(S34807) ribonucleoside-diphosphate reductase (EC 1.17.4.1... 213 8e-54
AM270068_2(AM270068|pid:none) Aspergillus niger contig An04c0070... 208 3e-52
AM920437_1772(AM920437|pid:none) Penicillium chrysogenum Wiscons... 206 1e-51
CR382139_247(CR382139|pid:none) Debaryomyces hansenii strain CBS... 203 8e-51
AE016817_343(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 201 4e-50
(P79732) RecName: Full=Ribonucleoside-diphosphate reductase larg... 196 2e-48
CU207366_3423(CU207366|pid:none) Gramella forsetii KT0803 comple... 196 2e-48
BC044356_1(BC044356|pid:none) Danio rerio ribonucleotide reducta... 195 3e-48
protein update 2009. 4.12
PSORT

psg: 0.53 gvh: 0.38 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHR103 is nuc

5' end seq. ID CHR103F
5' end seq.
>CHR103F.Seq
AATAGTATTAATGTAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGT
ACAAAAGAAAATGTATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATG
GAACCAAAATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGT
GGAGTATTTCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCA
TATATGTCAACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAAT
CTTCATAAACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATT
AATCCAAAGAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATG
AAACATGGTGAGAGATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTC
TTTGGATTCAAAACATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAG
CGTCCACAACACATGTTGATGCGTGTCTCCATTGGTATCNNNNNNNNNN
Length of 5' end seq. 589
3' end seq. ID CHR103Z
3' end seq.
>CHR103Z.Seq
NNNNNNNNNNTCGATGTTTTAAACAAGGGCTCGTCAAGCTGATCCATCTTNGGAGCCAGA
AATCAAAAAGAATCCTTGATAACCTCAAAAAACTTGAAGAATATAATCTCACCACCTCTG
CCGATAATTATTCCTCTTTCCTCAAGGCAGTCGCACTCGAAAGTAGTTAATCGTGCTGAA
ATTCGGAACAACAAAAGAAGGAGAAACAAAGATTAACCACCTCTTTGAATAATCTTCGTA
AACATCAAAAATATCTCAACGAACANATCGCTCAATACAATCAATACCTCCAAGATTGTC
GTCTCAAACATNATCAAAACAAGAGCAAAAAGAAGAAGAAGGGAGATGGTGCCNAAGTTG
GTCCTTTCNAATTCAGTTTCAGCGAACTTCACAAGAAAGAGTGTCATCGTCGACTCTGAA
GTTCCTCAAATCCCCAGAAAGAAGATTAAATTTGTCATTAGCTCTGATCCCGTTGGTGTG
TTTNATGTCTCTGCTAAAATGGCTGGTATCGATGTTCAAACTATGCGTTTNNAACTTGAT
GGCCTTTTAGAACTCAATTCAATCGGCACCACAACTTTAGAATTAGATCAAATCACTTCA
GATGTTAATATGACCATACATTTATTAAACAAACTT
Length of 3' end seq. 636
Connected seq. ID CHR103P
Connected seq.
>CHR103P.Seq
AATAGTATTAATGTAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGT
ACAAAAGAAAATGTATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATG
GAACCAAAATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGT
GGAGTATTTCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCA
TATATGTCAACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAAT
CTTCATAAACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATT
AATCCAAAGAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATG
AAACATGGTGAGAGATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTC
TTTGGATTCAAAACATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAG
CGTCCACAACACATGTTGATGCGTGTCTCCATTGGTATC----------TCGATGTTTTA
AACAAGGGCTCGTCAAGCTGATCCATCTTNGGAGCCAGAAATCAAAAAGAATCCTTGATA
ACCTCAAAAAACTTGAAGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCC
TCAAGGCAGTCGCACTCGAAAGTAGTTAATCGTGCTGAAATTCGGAACAACAAAAGAAGG
AGAAACAAAGATTAACCACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACG
AACANATCGCTCAATACAATCAATACCTCCAAGATTGTCGTCTCAAACATNATCAAAACA
AGAGCAAAAAGAAGAAGAAGGGAGATGGTGCCNAAGTTGGTCCTTTCNAATTCAGTTTCA
GCGAACTTCACAAGAAAGAGTGTCATCGTCGACTCTGAAGTTCCTCAAATCCCCAGAAAG
AAGATTAAATTTGTCATTAGCTCTGATCCCGTTGGTGTGTTTNATGTCTCTGCTAAAATG
GCTGGTATCGATGTTCAAACTATGCGTTTNNAACTTGATGGCCTTTTAGAACTCAATTCA
ATCGGCACCACAACTTTAGAATTAGATCAAATCACTTCAGATGTTAATATGACCATACAT
TTATTAAACAAACTT
Length of connected seq. 1205
Full length Seq ID -
Full length Seq. -
Length of full length seq. -