CHR102
Library CH
(Link to library)
Clone ID CHR102
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11360-1
Original site URL
Representative seq. ID CHR102P
(Link to Original site)
Representative DNA sequence
>CHR102 (CHR102Q) /CSM/CH/CHR1-A/CHR102Q.Seq.d/
GTGCACTATTATATTTAATTTTTCATTTTCATTTTATTAAATAATTAATAACAAATATGT
ATAAACTTAGTGATCCTTTTGATTATTTAAATGATAATAGTTATTCAAAGTCTAATCCAG
AAGCTTTTTGGGATGAGGTTGCTAAAAAGAATGTTTTTTGGGATAAAATGTATGATAAAG
TTTATAGTGGCGATGAAATATATCCAGATTGGTTTAAAGGTGGTGAATTAAATACATGTT
ATAATTTATTAGATATTCATATTAAAAATCCTGCTAAAAGAGATCAAGATGCATTAATTT
ATGAATGTCCATTTTTAAAGAAAACAATTAAATTAACATATTATCAATTATATGAAAAAG
TATGTGAATTTTCAAGAGTACTTTTAAATTTAAATGTTTCAAAAAATGATAATGTTTTAA
TATTTATGGCAAATACATTAGAACCATTGATTGCAATGTTATCATGTGCTCGTATTGGTG
CAACTCAATGTACATTATTCGATGGTTCTTCGGTTAAAAGTTTAATAGATAGAATCGAAA
CAATTACACCAAAATTAATAATTACAACAAATTATGGTATTTTAAATGACGAAATCATTA
CATTTACACCAAATTTAAAAGAAGCAATTGAATTATCAACTTTTAXXXXXXXXXXAGTAA
TTGAAGAATCAATTCCAGAATATATTGAACAAAAGTTAAAAATAAAATGTTTAAGAGTAT
TTGGTCAAAGTGAAATTGGCGTAACTTCATTTATTAGTGTCCATGCTTTAAATATTCCTT
ATAGAGCCACTGGCGTACCATCAATTTATATTAGACCATCAATACTTTCAGAAGAAGGTG
AAGTTTTGAATTCAAATGAAATTGGTTTAGTTGCATTTAAACTACCAATGCCTCCCAGTT
TTACAATTACATTTTATAAAAATGATGAAAAGTTTAAACAACTATTTACAAGATTTCCAG
GTTACTACGATTCAGGTGATTTAGGTTATAAAGATCAAAGAGGATTTTATACAATTGTTT
CAAGATCAGATGATCAAATTAAGATAGGTTTTAATAAAATTCAATTAAATACAATTGACA
CATCAATTTTAAAACATCCATCAGTTTTAGAATGTTGTTCTATTGGTATTTTAAGTCCAG
ATTGCCATACTGCACCGATTGGTATATTGGTATTAAAAGAAAATCCATCAATTGATTTAA
ATAAATTACAAAATGAAATTAATAATATCATCACGCAAGATATTGAATCACTGGCAGTCT
TAAAAAAAATAATAGTTATTAACCAATTACCAAAAACAAAAGTTGGTAAAATTCCAAGAC
AAATTTTATCACCATCTTATTAAATGATCCAAACTATCAATTACCAGACGATGTCAATGA
CTCNGAACTATTTTATAAAGATCAAAGAGTTATATANAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
allylifhfhfik*LITNMYKLSDPFDYLNDNSYSKSNPEAFWDEVAKKNVFWDKMYDKV
YSGDEIYPDWFKGGELNTCYNLLDIHIKNPAKRDQDALIYECPFLKKTIKLTYYQLYEKV
CEFSRVLLNLNVSKNDNVLIFMANTLEPLIAMLSCARIGATQCTLFDGSSVKSLIDRIET
ITPKLIITTNYGILNDEIITFTPNLKEAIELSTF---

---VIEESIPEYIEQKLKIKCLRVFGQSEIGVTSFISVHALNIPYRATGVPSIYIRPSIL
SEEGEVLNSNEIGLVAFKLPMPPSFTITFYKNDEKFKQLFTRFPGYYDSGDLGYKDQRGF
YTIVSRSDDQIKIGFNKIQLNTIDTSILKHPSVLECCSIGILSPDCHTAPIGILVLKENP
SIDLNKLQNEINNIITQDIESLAVLKKIIVINQLPKTKVGKIPRQILSPSY*miqtinyq
tmsmtxnyfikikelyxk


Translated Amino Acid sequence (All Frames)
Frame A:
vhyyi*ffifillnn**qicinlvillii*miiviqsliqklfgmrllkrmffgikcmik
fivamkyiqiglkvvn*ihviiy*ifilkillkeikmh*fmnvhf*rkqln*hiinymkk
yvnfqeyf*i*mfqkmimf*ylwqih*nh*lqcyhvlvlvqlnvhysmvlrlkv**iesk
qlhqn**lqqimvf*mtkslhlhqi*kkqlnyqll---

---sn*rinsriy*tkvknkmfksiwsk*nwrnfiy*cpcfkysl*shwrtinly*tint
frrr*sfefk*nwfsci*ttnasqfynyil*k**kv*ttiykisrllrfr*frl*rskri
lyncfkir*sn*drf**nsikyn*hinfktsisfrmlfywyfksrlpyctdwyigikrks
in*fk*itk*n**yhhary*itgslkknnsy*pitknksw*nsktnfitillndpnyqlp
ddvndselfykdqrvixk

Frame B:
ctiifnfsfsfy*iinnkyv*t**sf*lfk***lfkv*srsflg*gc*kecflg*nv**s
l*wr*nisrlv*rw*ikyml*firysy*ksc*krsrcinl*msifkenn*inilsii*ks
m*ifkstfkfkcfkk**cfniygkyirtidcnvimcsywcnsmyiirwffg*kfnr*nrn
nytkinnynklwyfk*rnhyiytkfkrsn*iinf---

---VIEESIPEYIEQKLKIKCLRVFGQSEIGVTSFISVHALNIPYRATGVPSIYIRPSIL
SEEGEVLNSNEIGLVAFKLPMPPSFTITFYKNDEKFKQLFTRFPGYYDSGDLGYKDQRGF
YTIVSRSDDQIKIGFNKIQLNTIDTSILKHPSVLECCSIGILSPDCHTAPIGILVLKENP
SIDLNKLQNEINNIITQDIESLAVLKKIIVINQLPKTKVGKIPRQILSPSY*miqtinyq
tmsmtxnyfikikelyxk

Frame C:
allylifhfhfik*LITNMYKLSDPFDYLNDNSYSKSNPEAFWDEVAKKNVFWDKMYDKV
YSGDEIYPDWFKGGELNTCYNLLDIHIKNPAKRDQDALIYECPFLKKTIKLTYYQLYEKV
CEFSRVLLNLNVSKNDNVLIFMANTLEPLIAMLSCARIGATQCTLFDGSSVKSLIDRIET
ITPKLIITTNYGILNDEIITFTPNLKEAIELSTF---

---*lknqfqnilnks*k*nv*eylvkvkla*lhllvsml*iflieplayhqfildhqyf
qkkvkf*iqmklv*lhlnyqclpvlqlhfikmmkslnnylqdfqvttiqvi*vikikedf
iqlfqdqmiklr*vlikfn*iqlthqf*nihqf*nvvllvf*vqiailhrlvywy*kkih
qli*inykmkliissrkilnhwqs*kk**lltnyqkqklvkfqdkfyhhlik*sklsitr
rcq*lxtil*rsksyixk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR102 (CHR102Q) /CSM/CH/CHR1-A/CHR102Q.Seq.d/ 2692 0.0
CFB284 (CFB284Q) /CSM/CF/CFB2-D/CFB284Q.Seq.d/ 1257 0.0
CHB685 (CHB685Q) /CSM/CH/CHB6-D/CHB685Q.Seq.d/ 1068 0.0
AFE737 (AFE737Q) /CSM/AF/AFE7-B/AFE737Q.Seq.d/ 811 0.0
CFF293 (CFF293Q) /CSM/CF/CFF2-D/CFF293Q.Seq.d/ 805 0.0
CHH414 (CHH414Q) /CSM/CH/CHH4-A/CHH414Q.Seq.d/ 753 0.0
SSE344 (SSE344Q) /CSM/SS/SSE3-B/SSE344Q.Seq.d/ 739 0.0
AHG676 (AHG676Q) /CSM/AH/AHG6-D/AHG676Q.Seq.d/ 624 e-178
CHI133 (CHI133Q) /CSM/CH/CHI1-B/CHI133Q.Seq.d/ 585 e-166
VHC655 (VHC655Q) /CSM/VH/VHC6-C/VHC655Q.Seq.d/ 579 e-164

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1201 0.0 5
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 470 0.0 15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 62 2e-10 2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 58 2e-10 2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 46 1e-07 18
AE016744|AE016744.1 Staphylococcus epidermidis ATCC 12228, section 1 of 9 of the complete genome. 38 5e-07 18
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 2e-06 18
AE017244|AE017244.1 Mycoplasma hyopneumoniae 7448, complete genome. 40 1e-05 20
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 36 4e-05 17
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 7e-05 18
dna update 2005.11.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_184(AC116984|pid:none) Dictyostelium discoideum chromos... 388 e-106
AC116984_182(AC116984|pid:none) Dictyostelium discoideum chromos... 369 e-100
AC116984_181(AC116984|pid:none) Dictyostelium discoideum chromos... 362 1e-98
AC116984_180(AC116984|pid:none) Dictyostelium discoideum chromos... 345 3e-93
AC116984_172(AC116984|pid:none) Dictyostelium discoideum chromos... 340 9e-92
AC116984_175(AC116984|pid:none) Dictyostelium discoideum chromos... 334 5e-90
AC116984_174(AC116984|pid:none) Dictyostelium discoideum chromos... 327 8e-88
AC116984_173(AC116984|pid:none) Dictyostelium discoideum chromos... 319 1e-85
CP000859_1493(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 137 1e-30
CP000758_1168(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 132 3e-29
protein update 2009. 4.12
PSORT

psg: 0.52 gvh: 0.17 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for CHR102 is nuc

5' end seq. ID CHR102F
5' end seq.
>CHR102F.Seq
GTGCACTATTATATTTAATTTTTCATTTTCATTTTATTAAATAATTAATAACAAATATGT
ATAAACTTAGTGATCCTTTTGATTATTTAAATGATAATAGTTATTCAAAGTCTAATCCAG
AAGCTTTTTGGGATGAGGTTGCTAAAAAGAATGTTTTTTGGGATAAAATGTATGATAAAG
TTTATAGTGGCGATGAAATATATCCAGATTGGTTTAAAGGTGGTGAATTAAATACATGTT
ATAATTTATTAGATATTCATATTAAAAATCCTGCTAAAAGAGATCAAGATGCATTAATTT
ATGAATGTCCATTTTTAAAGAAAACAATTAAATTAACATATTATCAATTATATGAAAAAG
TATGTGAATTTTCAAGAGTACTTTTAAATTTAAATGTTTCAAAAAATGATAATGTTTTAA
TATTTATGGCAAATACATTAGAACCATTGATTGCAATGTTATCATGTGCTCGTATTGGTG
CAACTCAATGTACATTATTCGATGGTTCTTCGGTTAAAAGTTTAATAGATAGAATCGAAA
CAATTACACCAAAATTAATAATTACAACAAATTATGGTATTTTAAATGACGAAATCATTA
CATTTACACCAAATTTAAAAGAAGCAATTGAATTATCAACTTTTANNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID CHR102Z
3' end seq.
>CHR102Z.Seq
NNNNNNNNNNAGTAATTGAAGAATCAATTCCAGAATATATTGAACAAAAGTTAAAAATAA
AATGTTTAAGAGTATTTGGTCAAAGTGAAATTGGCGTAACTTCATTTATTAGTGTCCATG
CTTTAAATATTCCTTATAGAGCCACTGGCGTACCATCAATTTATATTAGACCATCAATAC
TTTCAGAAGAAGGTGAAGTTTTGAATTCAAATGAAATTGGTTTAGTTGCATTTAAACTAC
CAATGCCTCCCAGTTTTACAATTACATTTTATAAAAATGATGAAAAGTTTAAACAACTAT
TTACAAGATTTCCAGGTTACTACGATTCAGGTGATTTAGGTTATAAAGATCAAAGAGGAT
TTTATACAATTGTTTCAAGATCAGATGATCAAATTAAGATAGGTTTTAATAAAATTCAAT
TAAATACAATTGACACATCAATTTTAAAACATCCATCAGTTTTAGAATGTTGTTCTATTG
GTATTTTAAGTCCAGATTGCCATACTGCACCGATTGGTATATTGGTATTAAAAGAAAATC
CATCAATTGATTTAAATAAATTACAAAATGAAATTAATAATATCATCACGCAAGATATTG
AATCACTGGCAGTCTTAAAAAAAATAATAGTTATTAACCAATTACCAAAAACAAAAGTTG
GTAAAATTCCAAGACAAATTTTATCACCATCTTATTAAATGATCCAAACTATCAATTACC
AGACGATGTCAATGACTCNGAACTATTTTATAAAGATCAAAGAGTTATATANAAAAA
Length of 3' end seq. 777
Connected seq. ID CHR102P
Connected seq.
>CHR102P.Seq
GTGCACTATTATATTTAATTTTTCATTTTCATTTTATTAAATAATTAATAACAAATATGT
ATAAACTTAGTGATCCTTTTGATTATTTAAATGATAATAGTTATTCAAAGTCTAATCCAG
AAGCTTTTTGGGATGAGGTTGCTAAAAAGAATGTTTTTTGGGATAAAATGTATGATAAAG
TTTATAGTGGCGATGAAATATATCCAGATTGGTTTAAAGGTGGTGAATTAAATACATGTT
ATAATTTATTAGATATTCATATTAAAAATCCTGCTAAAAGAGATCAAGATGCATTAATTT
ATGAATGTCCATTTTTAAAGAAAACAATTAAATTAACATATTATCAATTATATGAAAAAG
TATGTGAATTTTCAAGAGTACTTTTAAATTTAAATGTTTCAAAAAATGATAATGTTTTAA
TATTTATGGCAAATACATTAGAACCATTGATTGCAATGTTATCATGTGCTCGTATTGGTG
CAACTCAATGTACATTATTCGATGGTTCTTCGGTTAAAAGTTTAATAGATAGAATCGAAA
CAATTACACCAAAATTAATAATTACAACAAATTATGGTATTTTAAATGACGAAATCATTA
CATTTACACCAAATTTAAAAGAAGCAATTGAATTATCAACTTTTA----------AGTAA
TTGAAGAATCAATTCCAGAATATATTGAACAAAAGTTAAAAATAAAATGTTTAAGAGTAT
TTGGTCAAAGTGAAATTGGCGTAACTTCATTTATTAGTGTCCATGCTTTAAATATTCCTT
ATAGAGCCACTGGCGTACCATCAATTTATATTAGACCATCAATACTTTCAGAAGAAGGTG
AAGTTTTGAATTCAAATGAAATTGGTTTAGTTGCATTTAAACTACCAATGCCTCCCAGTT
TTACAATTACATTTTATAAAAATGATGAAAAGTTTAAACAACTATTTACAAGATTTCCAG
GTTACTACGATTCAGGTGATTTAGGTTATAAAGATCAAAGAGGATTTTATACAATTGTTT
CAAGATCAGATGATCAAATTAAGATAGGTTTTAATAAAATTCAATTAAATACAATTGACA
CATCAATTTTAAAACATCCATCAGTTTTAGAATGTTGTTCTATTGGTATTTTAAGTCCAG
ATTGCCATACTGCACCGATTGGTATATTGGTATTAAAAGAAAATCCATCAATTGATTTAA
ATAAATTACAAAATGAAATTAATAATATCATCACGCAAGATATTGAATCACTGGCAGTCT
TAAAAAAAATAATAGTTATTAACCAATTACCAAAAACAAAAGTTGGTAAAATTCCAAGAC
AAATTTTATCACCATCTTATTAAATGATCCAAACTATCAATTACCAGACGATGTCAATGA
CTCNGAACTATTTTATAAAGATCAAAGAGTTATATANAAAAA
Length of connected seq. 1412
Full length Seq ID -
Full length Seq. -
Length of full length seq. -