>CHR101 (CHR101Q) /CSM/CH/CHR1-A/CHR101Q.Seq.d/
XXXXXXXXXXCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCA
GTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAAC
TCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAA
GATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAG
TATGAAGCTGCCCAACATGAAGTTGCCTTTCTAGATGAAAATGAACAAGATGCTGCTAAA
TTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTT
TCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAA
CAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAA
GAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTC
TACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAAT
AAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATT
AAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTA
AATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCAT
TCTTTNCTTTTTAAAAAAC

---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxlfkk

Frame A:
---sreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*tr
ch*tsstftty*kw*ryr*v*scpt*sclsr*k*trcc*itk*ngpirtlt*re*rrtif
k*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*ik
srkkstiirtrtkskii*sffxf*k


Frame B:
---PERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxlfkk


Frame C:
---qrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinny*nknkiknnliilxflkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR101 (CHR101Q) /CSM/CH/CHR1-A/CHR101Q.Seq.d/                        769   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        761   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        761   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        761   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        761   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        761   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        761   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        761   0.0
SHL546 (SHL546Q) /CSM/SH/SHL5-B/SHL546Q.Seq.d/                        761   0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/                        761   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   761   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   8e-05  9
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.003  7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.003  8
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    40   0.009  13
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   0.011  9
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.016  2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.017  14
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    36   0.021  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   297   3e-79
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.32
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.42
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.55
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.71
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    37   0.93
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   1.6
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.6
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   2.1
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.1

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHR101 is nuc

>CHR101Z.Seq
NNNNNNNNNNCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCA
GTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAAC
TCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAA
GATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAG
TATGAAGCTGCCCAACATGAAGTTGCCTTTCTAGATGAAAATGAACAAGATGCTGCTAAA
TTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTT
TCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAA
CAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAA
GAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTC
TACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAAT
AAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATT
AAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTA
AATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCAT
TCTTTNCTTTTTAAAAAAC