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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ876
Library CH
(Link to library)
Clone ID CHQ876
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHQ876P
(Link to Original site)
Representative DNA sequence 
>CHQ876 (CHQ876Q) /CSM/CH/CHQ8-D/CHQ876Q.Seq.d/
TAAGTTAAAAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTT
TATGATATTCCTTGTATCAAAATCCTATGCNACGGATTGTAATAAAATTACTAATGAANA
AAAATGTCATAAATNTTCGGAATGTATTGTTATAAATTATACNCCATGTTGNGGNGAACA
AAAATGGGCTTGCTNTAAAGGTACATTTGATACTTGTNCATATNAAAATAGTTGTTATAA
AAATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATT
TATTAAAATTACAACTCCAACCGAGTNTTCTTGTTCTGATGCCAAAATXXXXXXXXXXAA
TGCTGTGTAAAGGGTTCNCCCATGATAGATGTTCATTAAGATGTCCACATGGCCATGAAT
GTAAAGTTGATCCCCAATGGTAAAGAATGTTGNGTCAGATCCCATAGACCACCACCACCA
GAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGGTAAA
AAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTT
GAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCA
CCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAA
CATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGT
CCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCAC
CACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACATGGA
AAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCCACCA
AAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGAT
TGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACT
GTACCAATTGATAAAGAAAATTGTTGGAAAAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
klkikk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEXKCHKXSECIVINYTPCXGEQ
KWACXKGTFDTCXYXNSCYKNSSNNQVVEVSNKCFNLDGFIKITTPTEXSCSDAK---

---MLCKGFXHDRCSLRCPHGHECKVDPQW*rmlxqip*ttttrslfikmptkt*m*i**
sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrkttpttt*km**emptrp*m*
s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rmlc*sspr*mfiemstrp*m*s*
stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k*k*lfnl*rpkl*kkrftlc
henctn**rkllek
Translated Amino Acid sequence (All Frames) 
Frame A:
*vknkkiikdvvxkkywsifydipcikilcxgl**ny**xkms*xfgmycyklyxmlxxt
kmgll*ryi*ylxixk*ll*kfiq*psc*sik*mlqs*wiy*nynsnrvflf*cqn---

---nav*rvxp**mfikmstwp*m*s*spmvknvxsdpidhhhqkfvh*dahqnmnvnlm
imvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqkdhthhnmknvirdahqamnv
klinmeknvallpidhhqnal*dvhqdmnvesttlvknvvlkfttinvh*dvhqamnvkl
inmeknvallpidhhqnah*dvhqnmnvesitlvknavlkvemiv*lvkt*tvkekvyiv
p*klyqlikkivgk

Frame B:
klkikk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEXKCHKXSECIVINYTPCXGEQ
KWACXKGTFDTCXYXNSCYKNSSNNQVVEVSNKCFNLDGFIKITTPTEXSCSDAK---

---MLCKGFXHDRCSLRCPHGHECKVDPQW*rmlxqip*ttttrslfikmptkt*m*i**
sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrkttpttt*km**emptrp*m*
s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rmlc*sspr*mfiemstrp*m*s*
stwkrmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k*k*lfnl*rpkl*kkrftlc
henctn**rkllek

Frame C:
s*k*knnkgccx*kileyfl*yslyqnpmxrivikllmxknvinxrnvll*iixhvxxnk
nglaxkvhlilvhxkivvikihpitkllkyqinasilmdllklqlqpsxlvlmpk---

---ccvkgspmidvh*dvhmamnvklipngkecxvrshrppppevcslrcppkheckfdd
hgkkccvkihcdevcdldcgrgfeckirhdgskccvrserphppqhekcnkrcppgheck
vdqhgkeccvvahrpppkcslrcpprhecrvnhfgeeccvkvhhdkcslrcppgheckvd
qhgkeccvvahrpppkcslrcppkhecrinhfgeeccvksrndcltcedlncerkglhca
mktvpidkencwkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ876 (CHQ876Q) /CSM/CH/CHQ8-D/CHQ876Q.Seq.d/                       2032   0.0
AHB393 (AHB393Q) /CSM/AH/AHB3-D/AHB393Q.Seq.d/                       1465   0.0
CHF634 (CHF634Q) /CSM/CH/CHF6-B/CHF634Q.Seq.d/                       1455   0.0
CHG728 (CHG728Q) /CSM/CH/CHG7-B/CHG728Q.Seq.d/                       1449   0.0
AHD601 (AHD601Q) /CSM/AH/AHD6-A/AHD601Q.Seq.d/                       1449   0.0
CHR829 (CHR829Q) /CSM/CH/CHR8-B/CHR829Q.Seq.d/                       1445   0.0
AHO207 (AHO207Q) /CSM/AH/AHO2-A/AHO207Q.Seq.d/                       1445   0.0
SFG167 (SFG167Q) /CSM/SF/SFG1-C/SFG167Q.Seq.d/                       1443   0.0
CHE842 (CHE842Q) /CSM/CH/CHE8-B/CHE842Q.Seq.d/                       1443   0.0
AHO801 (AHO801Q) /CSM/AH/AHO8-A/AHO801Q.Seq.d/                       1443   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1326   0.0    3
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1326   0.0    3
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    66   5e-15  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    66   1e-14  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    66   2e-06  1
CZ886621|CZ886621.1 215_2_12315608_3_37715_062 Barley methylation unfiltered library (LibID: 215) Hordeum vulgare genomic, genomic survey sequence.    52   0.025  1
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    48   0.027  3
AC141955|AC141955.2 Rattus norvegicus clone CH230-418P10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    48   0.12   3
AC162511|AC162511.3 Bos taurus clone CH240-113F1, *** SEQUENCING IN PROGRESS ***, 45 unordered pieces.    46   0.17   5
AC127160|AC127160.3 Rattus norvegicus clone CH230-460D14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.40   1
dna update 2005.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   530   e-156
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   187   2e-46
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   110   1e-22
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    79   2e-13
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    70   1e-10
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    70   1e-10
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        68   5e-10
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    64   7e-09
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    63   2e-08
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    61   6e-08
protein update 2009. 4.12
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.40  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for CHQ876 is exc
5' end seq. ID CHQ876F
5' end seq. 
>CHQ876F.Seq
TAAGTTAAAAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTT
TATGATATTCCTTGTATCAAAATCCTATGCNACGGATTGTAATAAAATTACTAATGAANA
AAAATGTCATAAATNTTCGGAATGTATTGTTATAAATTATACNCCATGTTGNGGNGAACA
AAAATGGGCTTGCTNTAAAGGTACATTTGATACTTGTNCATATNAAAATAGTTGTTATAA
AAATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATT
TATTAAAATTACAACTCCAACCGAGTNTTCTTGTTCTGATGCCAAAATNNNNNNNNNN
Length of 5' end seq. 358
3' end seq. ID CHQ876Z
3' end seq. 
>CHQ876Z.Seq
NNNNNNNNNNAATGCTGTGTAAAGGGTTCNCCCATGATAGATGTTCATTAAGATGTCCAC
ATGGCCATGAATGTAAAGTTGATCCCCAATGGTAAAGAATGTTGNGTCAGATCCCATAGA
CCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGAT
GATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGT
GGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAA
AGACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGT
AAAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGC
TCTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGT
GTTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTT
GATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTA
AGATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAA
AGTAGAAATGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGT
GCCATGAAAACTGTACCAATTGATAAAGAAAATTGTTGGAAAAAG
Length of 3' end seq. 765
Connected seq. ID CHQ876P
Connected seq. 
>CHQ876P.Seq
TAAGTTAAAAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTT
TATGATATTCCTTGTATCAAAATCCTATGCNACGGATTGTAATAAAATTACTAATGAANA
AAAATGTCATAAATNTTCGGAATGTATTGTTATAAATTATACNCCATGTTGNGGNGAACA
AAAATGGGCTTGCTNTAAAGGTACATTTGATACTTGTNCATATNAAAATAGTTGTTATAA
AAATTCATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATT
TATTAAAATTACAACTCCAACCGAGTNTTCTTGTTCTGATGCCAAAAT----------AA
TGCTGTGTAAAGGGTTCNCCCATGATAGATGTTCATTAAGATGTCCACATGGCCATGAAT
GTAAAGTTGATCCCCAATGGTAAAGAATGTTGNGTCAGATCCCATAGACCACCACCACCA
GAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGGTAAA
AAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTT
GAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCA
CCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAA
CATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGT
CCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCAC
CACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACATGGA
AAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCCACCA
AAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAATGAT
TGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACT
GTACCAATTGATAAAGAAAATTGTTGGAAAAAG
Length of connected seq. 1103
Full length Seq ID -
Full length Seq. -
Length of full length seq. -