>CHQ872 (CHQ872Q) /CSM/CH/CHQ8-C/CHQ872Q.Seq.d/
XXXXXXXXXXGAATATTTTCACATCAAAANGGACTTTCAAATCATGTTAAACTCAAAGGA
AGGNTTAAGACCAACCTTACCTCAAAANACTCCNCCTGGTNTTGAAGCNCTTTACAAACA
ATGNGTAAACCAAGAACAAACCTTAAGACCAAGNTGNGAANAAATCATTGAAACTTTAAA
TNGATTGANACATGAANATANGTTTTCAAAAANTACTTGGGATTNTTTAATTANAAAACT
ACCATNTTTATCNCCNCCNCCTCAACCAANTACTACAACAACAACTACTACTTTTTNTTC
CNCTTCAACNAATAATATAAATAATAACATAAATAATAACNATAANACNTAANGNATTTA
NANGNCTAANAATAATAATAATNAATA

---YFHIKXDFQIMLNSKEGLRPTLPQXTPPGXEALYKQXVNQEQTLRPXXEXIIETLNX
LXHEXXFSKXTWDXLIXKLPXLSPPPQPXTTTTTTTFXSXSTNNINNNINNNXXT*xixx
xxnnnnx

Frame A:
---niftskxtfksc*tqrkx*dqpylkxlxlvlkxftnnx*tknkp*dqxxxkslkl*x
d*xmxixfqkxlgix*lxnyhxyxxxlnqxlqqqlllfxplqxii*iit*iitixxxxfx
xlxiiixn


Frame B:
---ifshqxglsnhvklkgrxktnltskxsxwx*sxlqtmxkprtnlktkxxxnh*nfkx
ixt*xxvfkxylgxfnxkttxfixxxstxyynnnyyfxfxfnx*yk**hk**x*xxxxlx
x*x***xi


Frame C:
---YFHIKXDFQIMLNSKEGLRPTLPQXTPPGXEALYKQXVNQEQTLRPXXEXIIETLNX
LXHEXXFSKXTWDXLIXKLPXLSPPPQPXTTTTTTTFXSXSTNNINNNINNNXXT*xixx
xxnnnnx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ872 (CHQ872Q) /CSM/CH/CHQ8-C/CHQ872Q.Seq.d/                        450   e-126
SHL495 (SHL495Q) /CSM/SH/SHL4-D/SHL495Q.Seq.d/                        426   e-118
SHG122 (SHG122Q) /CSM/SH/SHG1-A/SHG122Q.Seq.d/                        426   e-118
SHE857 (SHE857Q) /CSM/SH/SHE8-C/SHE857Q.Seq.d/                        418   e-116
SHD120 (SHD120Q) /CSM/SH/SHD1-A/SHD120Q.Seq.d/                        418   e-116
CHS225 (CHS225Q) /CSM/CH/CHS2-B/CHS225Q.Seq.d/                        418   e-116
CHP295 (CHP295Q) /CSM/CH/CHP2-D/CHP295Q.Seq.d/                        418   e-116
AHP206 (AHP206Q) /CSM/AH/AHP2-A/AHP206Q.Seq.d/                        418   e-116
AHF423 (AHF423Q) /CSM/AH/AHF4-A/AHF423Q.Seq.d/                        418   e-116
AHC678 (AHC678Q) /CSM/AH/AHC6-D/AHC678Q.Seq.d/                        418   e-116

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC147515|AC147515.1 Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence.    46   0.15   2
AC147114|AC147114.2 Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence.    46   0.16   2
AC157834|AC157834.1 Strongylocentrotus purpuratus clone R3-4002I3, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44   0.39   2
BG712539|AL355492 Human DNA sequence from clone RP3-322A24 on chromosome 6, complete sequence [Homo sapiens]G, mRNA sequence.    46   0.53   1
AC168440|AC168440.2 Strongylocentrotus purpuratus clone R3-39F11, WORKING DRAFT SEQUENCE, 13 unordered pieces.    46   0.53   1
BX275242|BX275242.3 Gallus gallus multi-tissues normalized and once-subtracted cDNA  library (gcal) clone gcal0007c.b.20, 5prim end (M13R primer).    46   0.53   1
CR925728|CR925728.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-96G2.    46   0.53   1
AC168379|AC168379.2 Strongylocentrotus purpuratus clone R3-4013F5, WORKING DRAFT SEQUENCE, 31 unordered pieces.    46   0.53   1
BX275241|BX275241.2 Gallus gallus multi-tissues normalized and once-subtracted cDNA  library (gcal) clone gcal0007c.b.20, 3prim end (M13F primer).    46   0.53   1
CZ379368|CZ379368.1 ZMMBF0139C05f ZMMBF Zea mays genomic clone ZMMBF0139C05 5', genomic survey sequence.    46   0.53   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XX5) RecName: Full=Probable serine/threonine-protein kinase ...   126   2e-28
(Q54G28) RecName: Full=Probable tyrosine-protein kinase DDB_G029...    64   2e-09
(Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ...    45   6e-04
(Q55GG4) RecName: Full=Probable serine/threonine-protein kinase ...    44   0.002
AC151823_16(AC151823|pid:none) Medicago truncatula clone mth2-45...    40   0.032
AY093017_1(AY093017|pid:none) Arabidopsis thaliana putative prot...    37   0.16
AL031135_29(AL031135|pid:none) Arabidopsis thaliana DNA chromoso...    37   0.16
AY347832_1(AY347832|pid:none) Malus x domestica clone 17-4 prote...    37   0.21
FB918016_1(FB918016|pid:none) Sequence 137289 from Patent WO2008...    37   0.27
(Q54H45) RecName: Full=Probable serine/threonine-protein kinase ...    35   0.61

 psg: 0.71  gvh: 0.43  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHQ872 is nuc

>CHQ872Z.Seq
NNNNNNNNNNGAATATTTTCACATCAAAANGGACTTTCAAATCATGTTAAACTCAAAGGA
AGGNTTAAGACCAACCTTACCTCAAAANACTCCNCCTGGTNTTGAAGCNCTTTACAAACA
ATGNGTAAACCAAGAACAAACCTTAAGACCAAGNTGNGAANAAATCATTGAAACTTTAAA
TNGATTGANACATGAANATANGTTTTCAAAAANTACTTGGGATTNTTTAATTANAAAACT
ACCATNTTTATCNCCNCCNCCTCAACCAANTACTACAACAACAACTACTACTTTTTNTTC
CNCTTCAACNAATAATATAAATAATAACATAAATAATAACNATAANACNTAANGNATTTA
NANGNCTAANAATAATAATAATNAATA