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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ862
Library CH
(Link to library)
Clone ID CHQ862
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12270-1
Original site URL
Representative seq. ID CHQ862P
(Link to Original site)
Representative DNA sequence 
>CHQ862 (CHQ862Q) /CSM/CH/CHQ8-C/CHQ862Q.Seq.d/
AAAAACAAACAAATAAATAATACTAAATAATAATAAAAAATGACAATCTTAGGTTCAATC
TCATCAATTGGTAATGTTAAGTCAATTACAAAATCAAATAATTTATCATCATTATCAAAT
TCATCATCTTCTACACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGAAATGGA
GGATTACTCGGTGGAGTTGGTGGTCTTGTTGGTGGTGTTCTTGTTGGTACTGGTGTAATC
ATTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGT
TGTAATTAAAATTACAAACTTAAATTATAATTAAAATATTAAACCAACCAAAAATAAAAC
CCAATTTTTTAATTTGTAAAATAAAAAAAAAAXXXXXXXXXXAAAAACAAACAAATAAAT
AATACTAAATAATAATAAAAAATGACAATCTTAGGTTCAATCTCATCAATTGGTAATGTT
AAGTCAATTACAAAATCAAATAATTTATCATCATTATCAAATTCATCATCTTCTACACAA
TCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGAAATGGAGGATTACTCGGTGGAGTT
GGTGGTCTTGTTGGTGGTGTTCTTGTTGGTACTGGTGTAATCATTGGTTCTGTTTTACAC
GGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGTTGTAATTAAAATTACAAA
CTTAAATTATAATTAAAATATTAAACCAACCAAAAATAAAACCCAATTTTTTAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
kqtnk*y*iiikndnlrfnlinw*c*vnykik*fiiiikfiifytinefnsmwwwlwkwr
itrwswwscwwcscwywcnhwfcftrsrfhfnwrfkqlwl*lklqt*IIIKILNQPKIKP
NFLICKIKKK---

---KNKQINNTK***kmtilgsissignvksitksnnlsslsnsssstqsmnsiqcgggc
gnggllggvgglvggvlvgtgviigsvlhgvgsiltggsnncgcn*nyklkl*lky*tnq
k*npif*
Translated Amino Acid sequence (All Frames) 
Frame A:
knkqinntk***kmtilgsissignvksitksnnlsslsnsssstqsmnsiqcgggcgng
gllggvgglvggvlvgtgviigsvlhgvgsiltggsnncgcn*nyklkl*lky*tnqk*n
pif*fvk*kk---

---KNKQINNTK***kmtilgsissignvksitksnnlsslsnsssstqsmnsiqcgggc
gnggllggvgglvggvlvgtgviigsvlhgvgsiltggsnncgcn*nyklkl*lky*tnq
k*npif*

Frame B:
ktnk*iilnnnkk*qs*vqshqlvmlsqlqnqiiyhhyqihhllhnq*iqfnvvvvveme
dysvelvvllvvfllvlv*slvlfytesvpf*levqtivvvikitnlnyn*nikptknkt
qffnl*nkkk---

---ktnk*iilnnnkk*qs*vqshqlvmlsqlqnqiiyhhyqihhllhnq*iqfnvvvvv
emedysvelvvllvvfllvlv*slvlfytesvpf*levqtivvvikitnlnyn*nikptk
nktqffn

Frame C:
kqtnk*y*iiikndnlrfnlinw*c*vnykik*fiiiikfiifytinefnsmwwwlwkwr
itrwswwscwwcscwywcnhwfcftrsrfhfnwrfkqlwl*lklqt*IIIKILNQPKIKP
NFLICKIKKK---

---kqtnk*y*iiikndnlrfnlinw*c*vnykik*fiiiikfiifytinefnsmwwwlw
kwritrwswwscwwcscwywcnhwfcftrsrfhfnwrfkqlwl*lklqt*iiikilnqpk
ikpnfli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK883 (SSK883Q) /CSM/SS/SSK8-D/SSK883Q.Seq.d/                        553   e-156
SSH332 (SSH332Q) /CSM/SS/SSH3-B/SSH332Q.Seq.d/                        553   e-156
SSH195 (SSH195Q) /CSM/SS/SSH1-D/SSH195Q.Seq.d/                        553   e-156
SSF670 (SSF670Q) /CSM/SS/SSF6-C/SSF670Q.Seq.d/                        553   e-156
SSF453 (SSF453Q) /CSM/SS/SSF4-C/SSF453Q.Seq.d/                        553   e-156
SSD885 (SSD885Q) /CSM/SS/SSD8-D/SSD885Q.Seq.d/                        553   e-156
SLH633 (SLH633Q) /CSM/SL/SLH6-B/SLH633Q.Seq.d/                        553   e-156
CHQ862 (CHQ862Q) /CSM/CH/CHQ8-C/CHQ862Q.Seq.d/                        553   e-156
SSF259 (SSF259Q) /CSM/SS/SSF2-C/SSF259Q.Seq.d/                        547   e-155
SSJ629 (SSJ629Q) /CSM/SS/SSJ6-B/SSJ629Q.Seq.d/                        545   e-154
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   537   0.0    5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   369   e-139  4
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   119   1e-58  6
BM321931|BM321931.1 EtESTee19c06.y1 Eimeria tenella M5-6 cDNA Neg Selected Eimeria tenella cDNA 5', mRNA sequence.    46   3e-06  2
AF540004|AF540004.1 Caenorhabditis briggsae mesocentin (dig-1) gene, complete cds.    36   5e-05  5
CO547916|CO547916.1 LyEST4584 Sea lamprey LyEST Petromyzon marinus cDNA, mRNA sequence.    44   2e-04  2
BH162606|BH162606.1 ENTRV08TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42   3e-04  2
AZ672209|AZ672209.1 ENTMJ65TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.001  2
BH161693|BH161693.1 ENTRE52TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.001  2
BH166319|BH166319.1 ENTRI69TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.001  2
dna update 2005.11.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele...    33   9.6
protein update 2008.11. 8
PSORT 

 psg: 0.76  gvh: 0.22  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CHQ862 is nuc
5' end seq. ID CHQ862F
5' end seq. 
>CHQ862F.Seq
AAAAACAAACAAATAAATAATACTAAATAATAATAAAAAATGACAATCTTAGGTTCAATC
TCATCAATTGGTAATGTTAAGTCAATTACAAAATCAAATAATTTATCATCATTATCAAAT
TCATCATCTTCTACACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGAAATGGA
GGATTACTCGGTGGAGTTGGTGGTCTTGTTGGTGGTGTTCTTGTTGGTACTGGTGTAATC
ATTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGT
TGTAATTAAAATTACAAACTTAAATTATAATTAAAATATTAAACCAACCAAAAATAAAAC
CCAATTTTTTAATTTGTAAAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 402
3' end seq. ID CHQ862Z
3' end seq. 
>CHQ862Z.Seq
NNNNNNNNNNAAAAACAAACAAATAAATAATACTAAATAATAATAAAAAATGACAATCTT
AGGTTCAATCTCATCAATTGGTAATGTTAAGTCAATTACAAAATCAAATAATTTATCATC
ATTATCAAATTCATCATCTTCTACACAATCAATGAATTCAATTCAATGTGGTGGTGGTTG
TGGAAATGGAGGATTACTCGGTGGAGTTGGTGGTCTTGTTGGTGGTGTTCTTGTTGGTAC
TGGTGTAATCATTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAA
CAATTGTGGTTGTAATTAAAATTACAAACTTAAATTATAATTAAAATATTAAACCAACCA
AAAATAAAACCCAATTTTTTAATT
Length of 3' end seq. 384
Connected seq. ID CHQ862P
Connected seq. 
>CHQ862P.Seq
AAAAACAAACAAATAAATAATACTAAATAATAATAAAAAATGACAATCTTAGGTTCAATC
TCATCAATTGGTAATGTTAAGTCAATTACAAAATCAAATAATTTATCATCATTATCAAAT
TCATCATCTTCTACACAATCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGAAATGGA
GGATTACTCGGTGGAGTTGGTGGTCTTGTTGGTGGTGTTCTTGTTGGTACTGGTGTAATC
ATTGGTTCTGTTTTACACGGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGT
TGTAATTAAAATTACAAACTTAAATTATAATTAAAATATTAAACCAACCAAAAATAAAAC
CCAATTTTTTAATTTGTAAAATAAAAAAAAAA----------AAAAACAAACAAATAAAT
AATACTAAATAATAATAAAAAATGACAATCTTAGGTTCAATCTCATCAATTGGTAATGTT
AAGTCAATTACAAAATCAAATAATTTATCATCATTATCAAATTCATCATCTTCTACACAA
TCAATGAATTCAATTCAATGTGGTGGTGGTTGTGGAAATGGAGGATTACTCGGTGGAGTT
GGTGGTCTTGTTGGTGGTGTTCTTGTTGGTACTGGTGTAATCATTGGTTCTGTTTTACAC
GGAGTCGGTTCCATTTTAACTGGAGGTTCAAACAATTGTGGTTGTAATTAAAATTACAAA
CTTAAATTATAATTAAAATATTAAACCAACCAAAAATAAAACCCAATTTTTTAATT
Length of connected seq. 766
Full length Seq ID -
Full length Seq. -
Length of full length seq. -