CHQ790 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHQ790
Library	CH (Link to library)
Clone ID	CHQ790 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11931-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHQ7-D/CHQ790Q.Seq.d/
Representative seq. ID	CHQ790P (Link to Original site)
Representative DNA sequence	>CHQ790 (CHQ790Q) /CSM/CH/CHQ7-D/CHQ790Q.Seq.d/ GACGATCCAGAATTAATTTCAGAATTAACAGAAGATGATTTGGTTGCAATTAATGTAAAA AGAGGGCATGCAAAACGTGCATTTTTAAAAGCTAAAGAATTGGCAGGTAAACAAAATGAA AGTTCAGCTAAATCACCAGATGTTTCATCATCAACAACAACAGCATCAACATCATCATCA TCATCATCATCAACATCAGCACCAGTTGAAGAAAAGAAAAGAACAACAACAATTAGTATT GGTAAAAAAGGTGAAGATAATGATGATGATGATGAAGAAGAAGAGAAAGCTTCATATAGT GGTCCAATTTTACAAAGTAAAGTATTGAATGAAGGTTTCATTCAAAAGAAAGGTAATGAA GGTTTCTTTGGTTCAAAGATGTTTCAAAAGAGATATTTTAAAATTTATGAAGAAGGAAGA TTGGCATATTTTAAGAATCAAAATGATGTTTCACCAATTGGTGTTATCGAGATGAAAGGT GCATTGGCATGCGAAGATATGGAGGGAAAGCCACAAGGATTTAAATTATCCATGAAAACA AGCGCACGTGTTTATTGGTTAGTTGCAATGACCAATGACCAAAAACAAAAGTGGGTATCC GTTATCAAACAGCAAATCACCCCACCAGCCGTACCAAAACCAXXXXXXXXXXGTGGATTC GGTGGTGATTCAGAAACACCAGTACCAGAGAAGCGTATCTATCGTTATGAAGTCCCTCAT AAAACTACACTCAGAGATGGCGAATCTAAACAAATCTGTTTTGTCAGTACTAAATTACCA GTAAAGTCTTTTGATTTCATCACTTTTGCAACACCAAATTATCAAAAGTATGCTATGATC GGTAAAGATCAAGGTGCAAATGCTGCCTCTTCAGTTAATTCATCGGTTACTTTCACTTGG AATTTACCATACTCAATTCCAGCTGGTCAAATGAAATTACAAAGACAATTAAAAGATAAA TTTGGTTCCGATATTGTAAATACTTTTGATATCGCTCATTATAACCCAACTGATATCATT TCATTACCACTTCAACCATTGGGTAAAGTTTCTTCAACTCGTACCCAAACTGGTTTTAAC TTTGATCTCAATGGTTTATTCATTGTTGAAACCTATGAAATTCGTGTAAACAATGGTCGT GAAGAACCAATTAAAATCACTGTTGAAGAATCTTTATACCGTTCAACTTTCTGGGAAATC ACTAGTAGTAGTCATAAATTCACTCCACATCCAACTCATTCTCGTAAAATTCATTGGCAA TTATCAATTCCACCACTTGATGGTGAAGTAATTAAATATTCTGTATTTTATAGTGGTTTA AATTTACCAGCAAGTAGACTGCTAAAAAAGANAAAAAACTAATTAATTTTAATAAATAAA TATAAAT
sequence update	2002.10.25
Translated Amino Acid sequence	DDPELISELTEDDLVAINVKRGHAKRAFLKAKELAGKQNESSAKSPDVSSSTTTASTSSS SSSSTSAPVEEKKRTTTISIGKKGEDNDDDDEEEEKASYSGPILQSKVLNEGFIQKKGNE GFFGSKMFQKRYFKIYEEGRLAYFKNQNDVSPIGVIEMKGALACEDMEGKPQGFKLSMKT SARVYWLVAMTNDQKQKWVSVIKQQITPPAVPKP--- ---GFGGDSETPVPEKRIYRYEVPHKTTLRDGESKQICFVSTKLPVKSFDFITFATPNYQ KYAMIGKDQGANAASSVNSSVTFTWNLPYSIPAGQMKLQRQLKDKFGSDIVNTFDIAHYN PTDIISLPLQPLGKVSSTRTQTGFNFDLNGLFIVETYEIRVNNGREEPIKITVEESLYRS TFWEITSSSHKFTPHPTHSRKIHWQLSIPPLDGEVIKYSVFYSGLNLPASRLLKKXKN*l ilinkyk
Translated Amino Acid sequence (All Frames)	Frame A: DDPELISELTEDDLVAINVKRGHAKRAFLKAKELAGKQNESSAKSPDVSSSTTTASTSSS SSSSTSAPVEEKKRTTTISIGKKGEDNDDDDEEEEKASYSGPILQSKVLNEGFIQKKGNE GFFGSKMFQKRYFKIYEEGRLAYFKNQNDVSPIGVIEMKGALACEDMEGKPQGFKLSMKT SARVYWLVAMTNDQKQKWVSVIKQQITPPAVPKP--- ---vdsvviqkhqyqrsvsivmksliklhsemanlnksvlsvlnyqsllissllqhqii ksmlsvkikvqmlplqlihrllslgiyhtqfqlvknykdnkinlvpilillislii tqlisfhyhfnhwvkflqlvpklvltlismvysllkpmkfvtmvvknqlksllknlytv qlsgkslvvvinslhiqlilvkfignyqfhhlmvklnilyfivviyqqvdckrxktn f*inin Frame B: tiqnfqnqkmiwlqlmkegmqnvhfklknwqvnkmkvqlnhqmfhhqqqqhqhhhh hhhqhqhqlkkrkeqqqlvlvkkvkimmmmmkkkrklhivvqfykvkymkvsfkrkvmk vslvqrcfkrdilkfmkkedwhilrikmmfhqlvlsrkvhwhakiwreshkdlnypkq ahvfiglqpmtknksgyplsnsksphqpyqn--- ---wirwfrntstreaylslspsnytqrwritnlfcqyitskvffhhfcntkls kvcydrrsrckcclfsfigyfhleftilnsswsneitktikriwfryckyfyrsl* pnyhfittstigsffnsypnwflsqwfihcnlnsckqwsrtnnhcrifipf nflgnh*sihstsnsfsnslaiinsttwsnifcilwfkftsktakkxkkli nfnki Frame C: rsrinfrinrrfgcnckkracktcifksrigrtkkfsitrcfiinnnsiniiii iiinistsrkeknnnnywkrr*****rrresfiwsnftksierfhsker*r flwfkdvskeifnlrrkigifeskcftnwcyrdercigmrryggkatriiihenk rtcllvscndqpktkvgiryqtanhptsrtkt--- ---GFGGDSETPVPEKRIYRYEVPHKTTLRDGESKQICFVSTKLPVKSFDFITFATPNYQ KYAMIGKDQGANAASSVNSSVTFTWNLPYSIPAGQMKLQRQLKDKFGSDIVNTFDIAHYN PTDIISLPLQPLGKVSSTRTQTGFNFDLNGLFIVETYEIRVNNGREEPIKITVEESLYRS TFWEITSSSHKFTPHPTHSRKIHWQLSIPPLDGEVIKYSVFYSGLNLPASRLLKKXKNl ilinkyk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHQ790 (CHQ790Q) /CSM/CH/CHQ7-D/CHQ790Q.Seq.d/ 2210 0.0 VHL194 (VHL194Q) /CSM/VH/VHL1-D/VHL194Q.Seq.d/ 1134 0.0 VHH490 (VHH490Q) /CSM/VH/VHH4-D/VHH490Q.Seq.d/ 1011 0.0 VHG274 (VHG274Q) /CSM/VH/VHG2-D/VHG274Q.Seq.d/ 1003 0.0 VHG182 (VHG182Q) /CSM/VH/VHG1-D/VHG182Q.Seq.d/ 997 0.0 VHO703 (VHO703Q) /CSM/VH/VHO7-A/VHO703Q.Seq.d/ 987 0.0 CHO790 (CHO790Q) /CSM/CH/CHO7-D/CHO790Q.Seq.d/ 553 e-156 VHQ364 (VHQ364Q) /CSM/VH/VHQ3-C/VHQ364Q.Seq.d/ 50 9e-05 VHM292 (VHM292Q) /CSM/VH/VHM2-D/VHM292Q.Seq.d/ 50 9e-05 VHG887 (VHG887Q) /CSM/VH/VHG8-D/VHG887Q.Seq.d/ 50 9e-05
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 1356 0.0 1 DV605564\|DV605564.1 EST1208560 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLAAX66 3' end, mRNA sequence. 64 8e-06 1 DV605563\|DV605563.1 EST1208559 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLAAX66 5' end, mRNA sequence. 64 8e-06 1 AV794049\|AV794049.1 Arabidopsis thaliana cDNA clone:RAFL08-11-F05, 3'-end. 60 1e-04 1 AY063908\|AY063908.1 Arabidopsis thaliana unknown protein (At3g18390) mRNA, complete cds. 60 1e-04 1 AB026658\|AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. 60 1e-04 1 CT030256\|CT030256.5 Mouse DNA sequence * SEQUENCING IN PROGRESS * from clone RP23-346K5. 48 2e-04 2 BM171128\|BM171128.1 EST573651 PyBS Plasmodium yoelii yoelii cDNA clone PYCQQ16 5' end, mRNA sequence. 58 2e-04 2 AL844507\|AL844507.1 Plasmodium falciparum chromosome 8. 46 4e-04 2 BX005073\|BX005073.7 Zebrafish DNA sequence from clone CH211-129N18. 50 4e-04 2
dna update	2005.11.10
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116982_55(AC116982\|pid:none) Dictyostelium discoideum chromoso... 444 e-123 BC097996_1(BC097996\|pid:none) Rattus norvegicus cDNA clone IMAGE... 53 3e-05 CP000473_4023(CP000473\|pid:none) Solibacter usitatus Ellin6076, ... 52 5e-05 EF043965_1(EF043965\|pid:none) Synthetic construct clone ATCC 106... 51 1e-04 BC029007_1(BC029007\|pid:none) Mus musculus RIKEN cDNA 2610034M16... 51 1e-04 BX005083_7(BX005083\|pid:none) Zebrafish DNA sequence from clone ... 50 2e-04 CP000142_2963(CP000142\|pid:none) Pelobacter carbinolicus DSM 238... 49 3e-04 (P79114) RecName: Full=Myosin-X; AltName: Full=Unconventional my... 46 0.003 CP000284_1511(CP000284\|pid:none) Methylobacillus flagellatus KT,... 45 0.006 (Q9HD67) RecName: Full=Myosin-X; AltName: Full=Unconventional my... 45 0.008
protein update	2009. 4.12
PSORT	psg: 0.75 gvh: 0.44 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.08 mip: 0.00 nuc: 0.03 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 32.0 %: cytoplasmic 16.0 %: mitochondrial 8.0 %: vacuolar 4.0 %: peroxisomal >> prediction for CHQ790 is nuc
5' end seq. ID	CHQ790F
5' end seq.	>CHQ790F.Seq GACGATCCAGAATTAATTTCAGAATTAACAGAAGATGATTTGGTTGCAATTAATGTAAAA AGAGGGCATGCAAAACGTGCATTTTTAAAAGCTAAAGAATTGGCAGGTAAACAAAATGAA AGTTCAGCTAAATCACCAGATGTTTCATCATCAACAACAACAGCATCAACATCATCATCA TCATCATCATCAACATCAGCACCAGTTGAAGAAAAGAAAAGAACAACAACAATTAGTATT GGTAAAAAAGGTGAAGATAATGATGATGATGATGAAGAAGAAGAGAAAGCTTCATATAGT GGTCCAATTTTACAAAGTAAAGTATTGAATGAAGGTTTCATTCAAAAGAAAGGTAATGAA GGTTTCTTTGGTTCAAAGATGTTTCAAAAGAGATATTTTAAAATTTATGAAGAAGGAAGA TTGGCATATTTTAAGAATCAAAATGATGTTTCACCAATTGGTGTTATCGAGATGAAAGGT GCATTGGCATGCGAAGATATGGAGGGAAAGCCACAAGGATTTAAATTATCCATGAAAACA AGCGCACGTGTTTATTGGTTAGTTGCAATGACCAATGACCAAAAACAAAAGTGGGTATCC GTTATCAAACAGCAAATCACCCCACCAGCCGTACCAAAACCANNNNNNNNNN
Length of 5' end seq.	652
3' end seq. ID	CHQ790Z
3' end seq.	>CHQ790Z.Seq NNNNNNNNNNGTGGATTCGGTGGTGATTCAGAAACACCAGTACCAGAGAAGCGTATCTAT CGTTATGAAGTCCCTCATAAAACTACACTCAGAGATGGCGAATCTAAACAAATCTGTTTT GTCAGTACTAAATTACCAGTAAAGTCTTTTGATTTCATCACTTTTGCAACACCAAATTAT CAAAAGTATGCTATGATCGGTAAAGATCAAGGTGCAAATGCTGCCTCTTCAGTTAATTCA TCGGTTACTTTCACTTGGAATTTACCATACTCAATTCCAGCTGGTCAAATGAAATTACAA AGACAATTAAAAGATAAATTTGGTTCCGATATTGTAAATACTTTTGATATCGCTCATTAT AACCCAACTGATATCATTTCATTACCACTTCAACCATTGGGTAAAGTTTCTTCAACTCGT ACCCAAACTGGTTTTAACTTTGATCTCAATGGTTTATTCATTGTTGAAACCTATGAAATT CGTGTAAACAATGGTCGTGAAGAACCAATTAAAATCACTGTTGAAGAATCTTTATACCGT TCAACTTTCTGGGAAATCACTAGTAGTAGTCATAAATTCACTCCACATCCAACTCATTCT CGTAAAATTCATTGGCAATTATCAATTCCACCACTTGATGGTGAAGTAATTAAATATTCT GTATTTTATAGTGGTTTAAATTTACCAGCAAGTAGACTGCTAAAAAAGANAAAAAACTAA TTAATTTTAATAAATAAATATAAAT
Length of 3' end seq.	745
Connected seq. ID	CHQ790P
Connected seq.	>CHQ790P.Seq GACGATCCAGAATTAATTTCAGAATTAACAGAAGATGATTTGGTTGCAATTAATGTAAAA AGAGGGCATGCAAAACGTGCATTTTTAAAAGCTAAAGAATTGGCAGGTAAACAAAATGAA AGTTCAGCTAAATCACCAGATGTTTCATCATCAACAACAACAGCATCAACATCATCATCA TCATCATCATCAACATCAGCACCAGTTGAAGAAAAGAAAAGAACAACAACAATTAGTATT GGTAAAAAAGGTGAAGATAATGATGATGATGATGAAGAAGAAGAGAAAGCTTCATATAGT GGTCCAATTTTACAAAGTAAAGTATTGAATGAAGGTTTCATTCAAAAGAAAGGTAATGAA GGTTTCTTTGGTTCAAAGATGTTTCAAAAGAGATATTTTAAAATTTATGAAGAAGGAAGA TTGGCATATTTTAAGAATCAAAATGATGTTTCACCAATTGGTGTTATCGAGATGAAAGGT GCATTGGCATGCGAAGATATGGAGGGAAAGCCACAAGGATTTAAATTATCCATGAAAACA AGCGCACGTGTTTATTGGTTAGTTGCAATGACCAATGACCAAAAACAAAAGTGGGTATCC GTTATCAAACAGCAAATCACCCCACCAGCCGTACCAAAACCA----------GTGGATTC GGTGGTGATTCAGAAACACCAGTACCAGAGAAGCGTATCTATCGTTATGAAGTCCCTCAT AAAACTACACTCAGAGATGGCGAATCTAAACAAATCTGTTTTGTCAGTACTAAATTACCA GTAAAGTCTTTTGATTTCATCACTTTTGCAACACCAAATTATCAAAAGTATGCTATGATC GGTAAAGATCAAGGTGCAAATGCTGCCTCTTCAGTTAATTCATCGGTTACTTTCACTTGG AATTTACCATACTCAATTCCAGCTGGTCAAATGAAATTACAAAGACAATTAAAAGATAAA TTTGGTTCCGATATTGTAAATACTTTTGATATCGCTCATTATAACCCAACTGATATCATT TCATTACCACTTCAACCATTGGGTAAAGTTTCTTCAACTCGTACCCAAACTGGTTTTAAC TTTGATCTCAATGGTTTATTCATTGTTGAAACCTATGAAATTCGTGTAAACAATGGTCGT GAAGAACCAATTAAAATCACTGTTGAAGAATCTTTATACCGTTCAACTTTCTGGGAAATC ACTAGTAGTAGTCATAAATTCACTCCACATCCAACTCATTCTCGTAAAATTCATTGGCAA TTATCAATTCCACCACTTGATGGTGAAGTAATTAAATATTCTGTATTTTATAGTGGTTTA AATTTACCAGCAAGTAGACTGCTAAAAAAGANAAAAAACTAATTAATTTTAATAAATAAA TATAAAT
Length of connected seq.	1377
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas