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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHQ769
Library CH
(Link to library)
Clone ID CHQ769
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CHQ769P
(Link to Original site)
Representative DNA sequence 
>CHQ769 (CHQ769Q) /CSM/CH/CHQ7-C/CHQ769Q.Seq.d/
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAXXX
XXXXXXXAANNAANNNNNNNNNNNTNNTNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATNTTNNNAAAANNNNNNNNNNNNNNNNTTTTTTTTTTAAAAAAAAAA
AAAAAAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iksl*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKK---

---XXXXXXXXXKKKKKKKKKKKKNXXKXXXXXXFFFKKKKKKI
Translated Amino Acid sequence (All Frames) 
Frame A:
iksl*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKK---

---xxxxxxxxxkkkkkkkkkkkkkxxxxxxxxxfff*kkkkkn

Frame B:
lnhcsilfifklnintikks*n*ickinl*qklvi*kk---

---XXXXXXXXXKKKKKKKKKKKKNXXKXXXXXXFFFKKKKKKI

Frame C:
*iivvfcsysn*isiqlkkvkikfvksicnkn**fkkk---

---xxxxxxxxxkkkkkkkkkkkkxxxkxxxxxxfflkkkkkk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        170   6e-42
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        170   6e-42
SFJ803 (SFJ803Q) /CSM/SF/SFJ8-A/SFJ803Q.Seq.d/                        170   6e-42
SFJ792 (SFJ792Q) /CSM/SF/SFJ7-D/SFJ792Q.Seq.d/                        170   6e-42
SFI660 (SFI660Q) /CSM/SF/SFI6-C/SFI660Q.Seq.d/                        170   6e-42
SFH694 (SFH694Q) /CSM/SF/SFH6-D/SFH694Q.Seq.d/                        170   6e-42
SFH594 (SFH594Q) /CSM/SF/SFH5-D/SFH594Q.Seq.d/                        170   6e-42
SFG208 (SFG208Q) /CSM/SF/SFG2-A/SFG208Q.Seq.d/                        170   6e-42
SFE832 (SFE832Q) /CSM/SF/SFE8-B/SFE832Q.Seq.d/                        170   6e-42
SFE258 (SFE258Q) /CSM/SF/SFE2-C/SFE258Q.Seq.d/                        170   6e-42
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   103  2e-35  2
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   103  3e-34  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   103  3e-33  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    96  5e-33  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.   103  9e-19  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80  1e-11  1
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42  0.058  2
BX571707|BX571707.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-93K4.    46  0.19  1
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    40  0.38  6
AC097659|AC097659.3 Homo sapiens BAC clone RP11-408C24 from 4, complete sequence.    36  0.60  4
dna update 2003. 7.18
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 135,390,729
protein update 2009. 4.12
PSORT 

 psg: 0.57  gvh: 0.24  alm: 0.73  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 1.06  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for CHQ769 is nuc
5' end seq. ID CHQ769F
5' end seq. 
>CHQ769F.Seq
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAANNN
NNNNNNN
Length of 5' end seq. 127
3' end seq. ID CHQ769Z
3' end seq. 
>CHQ769Z.Seq
NNNNNNNNNNAANNAANNNNNNNNNNNTNNTNNNNNNAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATNTTNNNAAAANNNNNNNNNNNNNNNNTTTTTTTTTTAAAAAAA
AAAAAAAAAAAATAA
Length of 3' end seq. 135
Connected seq. ID CHQ769P
Connected seq. 
>CHQ769P.Seq
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAA---
-------AANNAANNNNNNNNNNNTNNTNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATNTTNNNAAAANNNNNNNNNNNNNNNNTTTTTTTTTTAAAAAAAAAA
AAAAAAAAATAA
Length of connected seq. 242
Full length Seq ID -
Full length Seq. -
Length of full length seq. -