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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ717
Library CH
(Link to library)
Clone ID CHQ717
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID CHQ717P
(Link to Original site)
Representative DNA sequence 
>CHQ717 (CHQ717Q) /CSM/CH/CHQ7-A/CHQ717Q.Seq.d/
ATTTAAAAATATTTCATTTTTTTTTTCTTTTTTACTTCACATTTAGGTCCTATATTCTAA
TTCATAATTAATTTTATTTGTTTTTTTTTGTAAAACATAAAAAAANGGCTGAATCACAAG
TTGAACGTTTCACATTCCAAGCTGAAATTAATCANCTTATGTCCCTTATTATTAATACTT
TTTATTCAAATAAANAAGTNTTTTTAAAAAAATTGATTTCAAATGCATCTGATGCCTTAA
ATAAAATTCGTTNCCAATCATTAACTGATGCATCAGTTTTGGAATCAAAANCTGANCTCN
AAATTAAAATTATTCCAAATAAAACTGCCAAAACTNTTACNCTCATTGATAGNGGTATTG
GTATGACCAAAACCGATNTGGTAAAAAATTTAGGTNCTATNGCTCGTTCAGGTNCTAAAA
ACTTTATGGAACAATTNCAAAGNGGXXXXXXXXXXAACTTCAGGTTTCTCATTAGATGAA
CCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGAT
GATTCATCAGCAACAANTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCA
TTAGAAGAAAACGATGAACCATCTGAAAGGAAAAAGTCGACTAGATTTAATTACTAGCCC
TTTTGCTATCAATTTTTGGAATATTGTTATATATTATAATAAAATAAATTTTAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
lkifhffflfyftfrsyilihn*FYLFFFVKHKKXAESQVERFTFQAEINXLMSLIINTF
YSNKXVFLKKLISNASDALNKIRXQSLTDASVLESKXXLXIKIIPNKTAKTXTLIDXGIG
MTKTDXVKNLGXXARSGXKNFMEQXQX---

---TSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATXEESTNTTTSDDIPPLEENDEPSE
RKKSTRFNY*pfcyqfleycyil**nkf*k
Translated Amino Acid sequence (All Frames) 
Frame A:
i*kyfiffffftshlgpif*fiinficffl*nikkxlnhklnvshsklklixlcplllil
fiqixkxf*kn*fqmhlmp*ikfvxnh*lmhqfwnqxlxsklklfqiklpkllxslixvl
v*pkpxw*ki*vlxlvqvlktlwnnxkx---

---nfrflir*tiiicftyssyd*irfkhsr*fisnx*rinkhnnq**ystirrkr*ti*
kekvd*i*llalllsifgillyiiik*ilk

Frame B:
fknisfffsfllhi*vlysns*lilfvffckt*kxg*its*tfhips*n*sxyvpyy*yf
lfk*xsxfkkidfkci*clk*nsxpiin*cisfgikx*xxn*nysk*ncqnxyxh**xyw
ydqnrxgkkfrxyxsfrx*klygtixkx---

---TSGFSLDEPSSFASRIHRMIKLGLSIQDDSSATXEESTNTTTSDDIPPLEENDEPSE
RKKSTRFNY*pfcyqfleycyil**nkf*k

Frame C:
lkifhffflfyftfrsyilihn*FYLFFFVKHKKXAESQVERFTFQAEINXLMSLIINTF
YSNKXVFLKKLISNASDALNKIRXQSLTDASVLESKXXLXIKIIPNKTAKTXTLIDXGIG
MTKTDXVKNLGXXARSGXKNFMEQXQX---

---lqvsh*mnhhhllhvfiv*ln*v*afkmihqqqxknqqtqqpvmifhh*kktmnhlk
gksrldlitspfainfwniviyynkinfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ717 (CHQ717Q) /CSM/CH/CHQ7-A/CHQ717Q.Seq.d/                       1053   0.0
CHM595 (CHM595Q) /CSM/CH/CHM5-D/CHM595Q.Seq.d/                        573   e-162
AHD141 (AHD141Q) /CSM/AH/AHD1-B/AHD141Q.Seq.d/                        561   e-159
VHD527 (VHD527Q) /CSM/VH/VHD5-B/VHD527Q.Seq.d/                        517   e-146
VHQ333 (VHQ333Q) /CSM/VH/VHQ3-B/VHQ333Q.Seq.d/                        511   e-144
VHP374 (VHP374Q) /CSM/VH/VHP3-D/VHP374Q.Seq.d/                        511   e-144
VHM505 (VHM505Q) /CSM/VH/VHM5-A/VHM505Q.Seq.d/                        511   e-144
VHI641 (VHI641Q) /CSM/VH/VHI6-B/VHI641Q.Seq.d/                        511   e-144
VFO212 (VFO212Q) /CSM/VF/VFO2-A/VFO212Q.Seq.d/                        509   e-143
VHH112 (VHH112Q) /CSM/VH/VHH1-A/VHH112Q.Seq.d/                        507   e-143
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.   353   0.0    4
BI509865|BI509865.1 BB170025B10D06.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170025B10D06 5', mRNA sequence.    52   3e-12  3
AZ217962|AZ217962.1 Sheared DNA-118B11.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-118B11, genomic survey sequence.    78   3e-10  1
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    52   1e-08  9
W40044|10443 (X14176) heat shock protein 83 (AA 1 - 703) (T.brucei), mRNA sequence.    70   7e-08  1
N45852|N45852.1 T1068 MVAT4 bloodstream form of serodeme WRATat1.1 Trypanosoma brucei rhodesiense cDNA 5' similar to Heat shock protein 83, mRNA sequence.    70   7e-08  1
AA098749|HS83_TRYBB HEAT SHOCK PROTEIN 83, mRNA sequence.    70   7e-08  1
AJ548628|AJ548628.1 Trypanosoma brucei GSS, clone 5b10.            70   7e-08  1
AZ219603|AZ219603.1 Sheared DNA-63C2.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-63C2, genomic survey sequence.    70   7e-08  1
AQ953049|AQ953049.1 Sheared DNA-50O22.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-50O22, genomic survey sequence.    70   7e-08  1
dna update 2005.11. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             177   2e-43
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   177   2e-43
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f...   147   4e-34
AY851367_1(AY851367|pid:none) Liriomyza huidobrensis heat shock ...   141   2e-32
AF006539_1(AF006539|pid:none) Drosophila pseudoobscura strain ps...   140   3e-32
AF006542_1(AF006542|pid:none) Drosophila pseudoobscura bogotana ...   140   3e-32
(O16084) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   140   3e-32
(P04810) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   140   3e-32
U57467_1(U57467|pid:none) Drosophila melanogaster heat shock pro...   140   3e-32
(P04811) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   140   3e-32
protein update 2009. 4.12
PSORT 

 psg: 0.46  gvh: 0.43  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHQ717 is nuc
5' end seq. ID CHQ717F
5' end seq. 
>CHQ717F.Seq
ATTTAAAAATATTTCATTTTTTTTTTCTTTTTTACTTCACATTTAGGTCCTATATTCTAA
TTCATAATTAATTTTATTTGTTTTTTTTTGTAAAACATAAAAAAANGGCTGAATCACAAG
TTGAACGTTTCACATTCCAAGCTGAAATTAATCANCTTATGTCCCTTATTATTAATACTT
TTTATTCAAATAAANAAGTNTTTTTAAAAAAATTGATTTCAAATGCATCTGATGCCTTAA
ATAAAATTCGTTNCCAATCATTAACTGATGCATCAGTTTTGGAATCAAAANCTGANCTCN
AAATTAAAATTATTCCAAATAAAACTGCCAAAACTNTTACNCTCATTGATAGNGGTATTG
GTATGACCAAAACCGATNTGGTAAAAAATTTAGGTNCTATNGCTCGTTCAGGTNCTAAAA
ACTTTATGGAACAATTNCAAAGNGGNNNNNNNNNN
Length of 5' end seq. 455
3' end seq. ID CHQ717Z
3' end seq. 
>CHQ717Z.Seq
NNNNNNNNNNAACTTCAGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTC
ATCGTATGATTAAATTAGGTTTAAGCATTCAAGATGATTCATCAGCAACAANTGAAGAAT
CAACAAACACAACAACCAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTG
AAAGGAAAAAGTCGACTAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTGGAATATT
GTTATATATTATAATAAAATAAATTTTAAAAA
Length of 3' end seq. 272
Connected seq. ID CHQ717P
Connected seq. 
>CHQ717P.Seq
ATTTAAAAATATTTCATTTTTTTTTTCTTTTTTACTTCACATTTAGGTCCTATATTCTAA
TTCATAATTAATTTTATTTGTTTTTTTTTGTAAAACATAAAAAAANGGCTGAATCACAAG
TTGAACGTTTCACATTCCAAGCTGAAATTAATCANCTTATGTCCCTTATTATTAATACTT
TTTATTCAAATAAANAAGTNTTTTTAAAAAAATTGATTTCAAATGCATCTGATGCCTTAA
ATAAAATTCGTTNCCAATCATTAACTGATGCATCAGTTTTGGAATCAAAANCTGANCTCN
AAATTAAAATTATTCCAAATAAAACTGCCAAAACTNTTACNCTCATTGATAGNGGTATTG
GTATGACCAAAACCGATNTGGTAAAAAATTTAGGTNCTATNGCTCGTTCAGGTNCTAAAA
ACTTTATGGAACAATTNCAAAGNGG----------AACTTCAGGTTTCTCATTAGATGAA
CCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGTTTAAGCATTCAAGAT
GATTCATCAGCAACAANTGAAGAATCAACAAACACAACAACCAGTGATGATATTCCACCA
TTAGAAGAAAACGATGAACCATCTGAAAGGAAAAAGTCGACTAGATTTAATTACTAGCCC
TTTTGCTATCAATTTTTGGAATATTGTTATATATTATAATAAAATAAATTTTAAAAA
Length of connected seq. 707
Full length Seq ID -
Full length Seq. -
Length of full length seq. -