CHQ711
Library CH
(Link to library)
Clone ID CHQ711
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHQ711P
(Link to Original site)
Representative DNA sequence
>CHQ711 (CHQ711Q) /CSM/CH/CHQ7-A/CHQ711Q.Seq.d/
TTTTTTTTAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGG
AATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATANGTAAAATTACGTAT
ACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAA
AAAAAXXXXXXXXXXTACTTCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTG
TGTCGCTCAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCAC
ATNTGACTCGTCTGCCCTTGGTTCAACCTNTGAAAGCTCTGCCTCTGGTTCCTCTGCTGT
TTCAAGCTCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAG
CTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTC
CCCATCTTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGC
CCCATCTTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGC
ATCATCTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGC
TGCAACTACAACTGCAAT
sequence update 2002.10.25
Translated Amino Acid sequence
ff*kystq*****k**q**giiik**ysynl*llxvklrihi*iiiiiivfknk*INNKK
K---

---TSPCSVAQCPTGYVCVAQNNVAVCLPRPTTTTGSTXDSSALGSTXESSASGSSAVSS
SASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPS
SSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAATTTA


Translated Amino Acid sequence (All Frames)
Frame A:
fflkifnsviiiikiitiirnynqiii*l*siitixkitytyinnyyyhcf*k*ink**k
k---

---yftmfrcsmsnwlclcrsk*csclfaktyhyhr*hx*lvcpwfnl*klclwflccfk
lclwffccfiftiiiccklfsificcklfsificcklfpificiiklfpificiiklcpi
ficiiklcsificiificiificiicsnyscnyncnyscnyncn

Frame B:
ff*kystq*****k**q**giiik**ysynl*llxvklrihi*iiiiiivfknk*INNKK
K---

---TSPCSVAQCPTGYVCVAQNNVAVCLPRPTTTTGSTXDSSALGSTXESSASGSSAVSS
SASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPS
SSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAATTTA

Frame C:
ffkniqlsnnnnknnnnnkel*snnniaiiynyyx*nyvyiyk*lllslflkink*iikk
k---

---lhhvpllnvqlvmfvslkim*lfvcqdlplppvahxtrlplvqpxkalplvpllfqa
lplvllllhlhhhhllqallhlhllqallhlhllqalphlhlhhqalphlhlhhqalphl
hlhhqallhlhlhhlhlhhlhlhhlqqlqlqlqlqlqlqlqlq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ657 (SFJ657Q) /CSM/SF/SFJ6-C/SFJ657Q.Seq.d/ 674 0.0
CHQ808 (CHQ808Q) /CSM/CH/CHQ8-A/CHQ808Q.Seq.d/ 674 0.0
CHQ711 (CHQ711Q) /CSM/CH/CHQ7-A/CHQ711Q.Seq.d/ 674 0.0
CHP677 (CHP677Q) /CSM/CH/CHP6-D/CHP677Q.Seq.d/ 674 0.0
CHL411 (CHL411Q) /CSM/CH/CHL4-A/CHL411Q.Seq.d/ 674 0.0
CHL207 (CHL207Q) /CSM/CH/CHL2-A/CHL207Q.Seq.d/ 674 0.0
CHG520 (CHG520Q) /CSM/CH/CHG5-A/CHG520Q.Seq.d/ 674 0.0
CHE870 (CHE870Q) /CSM/CH/CHE8-C/CHE870Q.Seq.d/ 674 0.0
AHM521 (AHM521Q) /CSM/AH/AHM5-A/AHM521Q.Seq.d/ 674 0.0
CHQ729 (CHQ729Q) /CSM/CH/CHQ7-B/CHQ729Q.Seq.d/ 670 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 674 0.0 4
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 666 0.0 2
M34548|M34548.1 D.discoideum spore coat 96 (sp96) gene, 5' flank. 50 1e-09 2
S96842|S96842.1 SP96=spore-coat protein {5' region} [Dictyostelium discoideum, prespore cells, Genomic, 2305 nt]. 50 3e-09 2
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 54 4e-05 3
BQ867133|BQ867133.1 QGC9O01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC9O01, mRNA sequence. 36 0.001 3
BQ858872|BQ858872.1 QGC11H15.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC11H15, mRNA sequence. 32 0.001 3
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 54 0.004 1
AC115683|AC115683.2 Dictyostelium discoideum chromosome 2 map complement(6135149-6105997) strain AX4, complete sequence. 38 0.005 4
CV643325|CV643325.1 EST922078 Field isolate cDNA library Plasmodium vivax cDNA clone PVMEU82 5' end, mRNA sequence. 32 0.008 4
dna update 2005.11. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 65 1e-09
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 62 2e-08
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 34 3.3
Z81540_13(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ... 33 5.6
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 33 9.6
Z81540_14(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ... 33 9.6

protein update 2008.11. 8
PSORT

psg: 0.86 gvh: 0.54 alm: 0.44 top: 0.27 tms: 0.00 mit: 0.38 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
16.0 %: mitochondrial
16.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHQ711 is exc

5' end seq. ID CHQ711F
5' end seq.
>CHQ711F.Seq
TTTTTTTTAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGG
AATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATANGTAAAATTACGTAT
ACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAA
AAAAANNNNNNNNNN
Length of 5' end seq. 195
3' end seq. ID CHQ711Z
3' end seq.
>CHQ711Z.Seq
NNNNNNNNNNTACTTCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGTCG
CTCAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATNTG
ACTCGTCTGCCCTTGGTTCAACCTNTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAA
GCTCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTT
CTCCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCAT
CTTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCAT
CTTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCAT
CTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAA
CTACAACTGCAAT
Length of 3' end seq. 493
Connected seq. ID CHQ711P
Connected seq.
>CHQ711P.Seq
TTTTTTTTAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGG
AATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATANGTAAAATTACGTAT
ACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAA
AAAAA----------TACTTCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTG
TGTCGCTCAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCAC
ATNTGACTCGTCTGCCCTTGGTTCAACCTNTGAAAGCTCTGCCTCTGGTTCCTCTGCTGT
TTCAAGCTCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAG
CTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTC
CCCATCTTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGC
CCCATCTTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGC
ATCATCTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGC
TGCAACTACAACTGCAAT
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -