>CHQ694 (CHQ694Q) /CSM/CH/CHQ6-D/CHQ694Q.Seq.d/
XXXXXXXXXXTCTGAAATAGTTTTCCAATTTGGTGAAATCGATTGTCGTGAAGGTATCAT
CATCTCTGTTGAACGTTGTCGTTATAAAGATGTTGAAGATGGTATGAATGTTACAATCGA
TTATTATATNTCTGCTNTAAAAGATNTGGTAGATAAGTATAAATATAAAATTTTCATTCA
TCCAGTTGTACCTGTCCTTAATGAAACTCGTCATATAGTTAAAGAATTTAATAAAATTTN
TGAAAAGAAAATTAAAGCTTGTAAAGAATTTGTTTGGTTANANTTTTTCCCAACTCTNTT
AAATCCTCAGGATGAAAATTCTTTTAATACTCAATACGCCTTAGATGGCACTCATATGAA
TCCTTCTTANGTTCCA

---EIVFQFGEIDCREGIIISVERCRYKDVEDGMNVTIDYYXSAXKDXVDKYKYKIFIHP
VVPVLNETRHIVKEFNKIXEKKIKACKEFVWLXFFPTLLNPQDENSFNTQYALDGTHMNP
SXVP

Frame A:
---lk*fsnlvksivvkvsssllnvvvikmlkmv*mlqsiiixll*kxw*isinikfsfi
qlylslmklvi*lknlikfxkrklklvknlfgxxfsqlx*ilrmkillilntp*mali*i
llxf


Frame B:
---*nsfpiw*nrls*ryhhlc*tlsl*rc*rwyecynrllyxcxkrxgr*v*i*nfhss
sctcp**nssys*ri**nx*ken*sl*riclvxxfpnsxkssg*kff*ysirlrwhsyes
flxs


Frame C:
---EIVFQFGEIDCREGIIISVERCRYKDVEDGMNVTIDYYXSAXKDXVDKYKYKIFIHP
VVPVLNETRHIVKEFNKIXEKKIKACKEFVWLXFFPTLLNPQDENSFNTQYALDGTHMNP
SXVP

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHI262 (VHI262Q) /CSM/VH/VHI2-C/VHI262Q.Seq.d/                        678   0.0
VHE442 (VHE442Q) /CSM/VH/VHE4-B/VHE442Q.Seq.d/                        678   0.0
VHE232 (VHE232Q) /CSM/VH/VHE2-B/VHE232Q.Seq.d/                        678   0.0
SHB233 (SHB233Q) /CSM/SH/SHB2-B/SHB233Q.Seq.d/                        678   0.0
SHA125 (SHA125Q) /CSM/SH/SHA1-B/SHA125Q.Seq.d/                        678   0.0
SFF890 (SFF890Q) /CSM/SF/SFF8-D/SFF890Q.Seq.d/                        678   0.0
CHR725 (CHR725Q) /CSM/CH/CHR7-B/CHR725Q.Seq.d/                        678   0.0
CHQ694 (CHQ694Q) /CSM/CH/CHQ6-D/CHQ694Q.Seq.d/                        678   0.0
CHN540 (CHN540Q) /CSM/CH/CHN5-B/CHN540Q.Seq.d/                        678   0.0
CHK446 (CHK446Q) /CSM/CH/CHK4-B/CHK446Q.Seq.d/                        678   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC151801|AC151801.1 Solanum demissum chromosome 11 clone PGEC591C22 map MAP_LOC, complete sequence.    46   0.50   1
AC124314|AC124314.7 Mus musculus chromosome 10, clone RP23-193B6, complete sequence.    44   1.2    4
AC090407|AC090407.2 Homo sapiens chromosome 18 clone RP11-849J9 map 18, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44   2.0    1
AC154810|AC154810.1 Mus musculus chromosome 17 clone RP24-530D23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   2.0    1
AP001364|AP001364.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-867A6, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44   2.0    1
AC119497|AC119497.5 Rattus norvegicus clone CH230-521F8, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   2.0    1
AC136530|AC136530.2 Rattus norvegicus clone CH230-106H21, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   2.0    1
AP001165|AP001165.2 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-849J9, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44   2.0    1
AC094352|AC094352.7 Rattus norvegicus clone CH230-3C9, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   2.0    1
AC094540|AC094540.6 Rattus norvegicus clone CH230-4I11, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44   2.0    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 387,910,860

 psg: 0.75  gvh: 0.22  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHQ694 is nuc

>CHQ694Z.Seq
NNNNNNNNNNTCTGAAATAGTTTTCCAATTTGGTGAAATCGATTGTCGTGAAGGTATCAT
CATCTCTGTTGAACGTTGTCGTTATAAAGATGTTGAAGATGGTATGAATGTTACAATCGA
TTATTATATNTCTGCTNTAAAAGATNTGGTAGATAAGTATAAATATAAAATTTTCATTCA
TCCAGTTGTACCTGTCCTTAATGAAACTCGTCATATAGTTAAAGAATTTAATAAAATTTN
TGAAAAGAAAATTAAAGCTTGTAAAGAATTTGTTTGGTTANANTTTTTCCCAACTCTNTT
AAATCCTCAGGATGAAAATTCTTTTAATACTCAATACGCCTTAGATGGCACTCATATGAA
TCCTTCTTANGTTCCA