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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ690
Library CH
(Link to library)
Clone ID CHQ690
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11929-1
Original site URL
Representative seq. ID CHQ690P
(Link to Original site)
Representative DNA sequence 
>CHQ690 (CHQ690Q) /CSM/CH/CHQ6-D/CHQ690Q.Seq.d/
ACTTAAATAAACAAGAAATAATTGAAAGGATTAAAATTGTAAAAAAAAAGAAAAAGAGAA
TATGAAGAAGAACATGAACGAAAAGAAAATACTAATTCATTCAATAAAATTAACAATTAC
AGATAATATAGAACCAATTGAAATATTATTTTGGAAATTGTTTAGAAATAAAGCAATTTA
TAAAAAGATATTCTCATTTATGTATAACCAATATTCATTTAGTTACGATTCAGTATCGTC
AATAACTAAACTAATAGATTCAAATCAAATTAGTATTTTAAGAGAAAAAGCTTATAGAAA
TTGTAGATATTTAGAATTTGGTGAAACTTGTTGGCGTAAAGAGTCTGATCAATCTAGTTG
GCGTAAAGATTTAATTTTAATTTATTTAAAGAAATTATTTGAAATAATTAAAAATGATTT
CAAATTTTATAGAAACTTTTTCAAAATTCAAAGGTATTATTACTCTTCACCAATTTATGT
ATCAACTGCAATAATACAATCAAAGAATTTAGAAATTTAGAAATTATTTATAAATGAATT
CAATTACCAACCAACAAAAACAGATCTTTTAAATTCAATCGAGACAGGTTCAAATAAAAT
CATCAAATATATATTAGAATTAAAAAAATCAAACTCACCATCATCAACATCATTTGAAXX
XXXXXXXXTTTATTAATGTCAATTGATCAATTTGATTATAATAATAATAGTAACGATTTA
AAAGAAAAAGGTGGTACTACTATTAATATTGAAAAAAATGCTTAAATTAATTATTCTAGT
TAAAGAATTAACACCTTATTTATTTGAAGCAAATAATTTTAAATTTTTAAATTGGTTTTT
AACAAACATTAAAGATTATCATCATCAATTAAAATTATCATCATCATCACTCAAAACAAA
ACCAGATAAGGAATCAACTACGGTAGGAGATATTGTTTGTTCAATTTTATCTTTTATTTC
AAGCAATTCAAGATTAAAAATACTTGAATATATTCAAAACTTTAGTTTCATTTTAAAGAA
TAAACCAAATAATGGAGTTTTAAATCCTGGTCAATTTTATTTTTATCACTTTCTTGTTCA
ATTAATATTTCAGAATTTCTTTTACAATTCATTCCAATCATGAATTTAATTCAAATGAAA
TCTTTGAACCATACTTTAAAAATAATTTTAAATATCTAACAAATTAATAAAATAATTGAT
GATGACCATTCTTCATACAAACCAGCATTACCAAAATTATTGGACATAATTATTTATTTA
TTTACTTATTTAGATTTGGATGATTTGGATCAACAACAGCATCAAGTTATTTAGTAGTGA
TAGTGGAACATCAAAAACTACTAATACTACACAGCTAACCAAAAGCAATAATAATCAATA
ATAAAAAAACTCAGGATTAATTATAGTAACAATAC
sequence update 2002.10.25
Translated Amino Acid sequence 
lk*trnn*kd*nckkkekenmkknmnekkilihsikltitdniepieilfwklfrnkaiy
kkifsfmynqysfsydsvssitklidsnqisilrekayrncrylefgetcwrkesdqssw
rkdliliylkklfeiikndfkfyrnffkiqryyysspiyvstaiiqsknlei*KLFINEF
NYQPTKTDLLNSIETGSNKIIKYILELKKSNSPSSTSFE---

---LLMSIDQFDYNNNSNDLKEKGGTTINIEKNA*inyss*rintlfi*sk*f*ifklvf
nkh*rlsssikiiiiitqnktr*ginygrryclfnfifyfkqfkiknt*iyskl*fhfke
*tk*wsfkswsilflslscsinisefllqfipimnliqmkslnhtlkiilni*qinkiid
ddhssykpalpklldiiiylftyldlddldqqqhqvi****wnikny*yytanqkq**si
ikklrinysnn
Translated Amino Acid sequence (All Frames) 
Frame A:
t*inkk*lkglkl*kkrkreyeeeherkentnsfnkinnyr*yrtn*niileiv*k*snl
*kdiliyv*pifi*lrfsivnn*tnrfksn*yfkrksl*kl*ifriw*nlla*rv*si*l
a*rfnfnlfkeii*nn*k*fqil*klfqnskvlllftnlcincnntikefrnleiiyk*i
qlptnknrsfkfnrdrfk*nhqiyirikkikltiinii*---

---finvn*si*l*****rfkrkrwyyy*y*kkcln*lf*lkn*hliylkqiilnf*igf
*qtlkiiiin*nyhhhhskqnqirnqlr*eilfvqfyllfqaiqd*kylnifktlvsf*r
inqimef*ilvnfifitflfn*yfrisftihsnhefnsneifepyfknnfkyltn**nn*
**pffiqtsitkiighnylfiylfrfg*fgsttassylvvivehqkllilhs*pkaiiin
nkktqd*l**qy

Frame B:
lk*trnn*kd*nckkkekenmkknmnekkilihsikltitdniepieilfwklfrnkaiy
kkifsfmynqysfsydsvssitklidsnqisilrekayrncrylefgetcwrkesdqssw
rkdliliylkklfeiikndfkfyrnffkiqryyysspiyvstaiiqsknlei*KLFINEF
NYQPTKTDLLNSIETGSNKIIKYILELKKSNSPSSTSFE---

---LLMSIDQFDYNNNSNDLKEKGGTTINIEKNA*inyss*rintlfi*sk*f*ifklvf
nkh*rlsssikiiiiitqnktr*ginygrryclfnfifyfkqfkiknt*iyskl*fhfke
*tk*wsfkswsilflslscsinisefllqfipimnliqmkslnhtlkiilni*qinkiid
ddhssykpalpklldiiiylftyldlddldqqqhqvi****wnikny*yytanqkq**si
ikklrinysnn

Frame C:
lnkqeiierikivkkkkkri*rrt*tkrky*fiq*n*qlqii*nqlkyyfgncleikqfi
kryshlcitnihlvtiqyrq*ln**iqiklvf*ekklieivdi*nlvklvgvkslinlvg
vki*f*fi*rnylk*lkmisnfietfskfkgiitlhqfmyqlq*ynqri*kfrnyl*mns
itnqqkqif*iqsrqvqikssniy*n*knqthhhqhhl---

---y*cqlinliiiiivti*kkkvvlllilkkmlkliilvkeltpylfeannfkflnwfl
tnikdyhhqlklsssslktkpdkesttvgdivcsilsfissnsrlkileyiqnfsfilkn
kpnngvlnpgqfyfyhflvqlifqnffynsfqs*i*fk*nl*til*k*f*isnklik*lm
mtilhtnqhyqnywt*lfiylli*iwmiwinnsiklfssdsgtskttnttqltksnnnq*
*knsgliivti
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ690 (CHQ690Q) /CSM/CH/CHQ6-D/CHQ690Q.Seq.d/                       1758   0.0
VSB307 (VSB307Q) /CSM/VS/VSB3-A/VSB307Q.Seq.d/                         80   1e-13
AHP714 (AHP714Q) /CSM/AH/AHP7-A/AHP714Q.Seq.d/                         50   9e-05
VSK383 (VSK383Q) /CSM/VS/VSK3-D/VSK383Q.Seq.d/                         48   4e-04
VFN462 (VFN462Q) /CSM/VF/VFN4-C/VFN462Q.Seq.d/                         48   4e-04
SSK749 (SSK749Q) /CSM/SS/SSK7-C/SSK749Q.Seq.d/                         48   4e-04
CHR245 (CHR245Q) /CSM/CH/CHR2-B/CHR245Q.Seq.d/                         48   4e-04
VSI531 (VSI531Q) /CSM/VS/VSI5-B/VSI531Q.Seq.d/                         46   0.001
VSI508 (VSI508Q) /CSM/VS/VSI5-A/VSI508Q.Seq.d/                         46   0.001
SSF166 (SSF166Q) /CSM/SS/SSF1-C/SSF166Q.Seq.d/                         46   0.001
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115581|AC115581.3 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.   135   4e-85  12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   121   3e-49  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   145   4e-41  14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44   4e-09  14
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    44   8e-09  15
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    42   1e-08  14
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    42   2e-08  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   4e-08  15
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   7e-08  14
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    40   1e-07  25
dna update 2005.11. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115581_4(AC115581|pid:none) Dictyostelium discoideum chromosom...   184   6e-45
AC115581_2(AC115581|pid:none) Dictyostelium discoideum chromosom...   147   7e-34
AC116982_42(AC116982|pid:none) Dictyostelium discoideum chromoso...    71   3e-13
AF063866_88(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    52   4e-05
AC116982_3(AC116982|pid:none) Dictyostelium discoideum chromosom...    47   0.002
AC115683_2(AC115683|pid:none) Dictyostelium discoideum chromosom...    39   0.33
AC116922_7(AC116922|pid:none) Dictyostelium discoideum chromosom...    38   0.74
AC115579_3(AC115579|pid:none) Dictyostelium discoideum chromosom...    37   1.6
AF012250_1(AF012250|pid:none) Physarum polycephalum strain aux2-...    36   2.8
AC116956_64(AC116956|pid:none) Dictyostelium discoideum chromoso...    36   2.8
protein update 2009. 4.12
PSORT 

 psg: 0.62  gvh: 0.36  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHQ690 is cyt
5' end seq. ID CHQ690F
5' end seq. 
>CHQ690F.Seq
ACTTAAATAAACAAGAAATAATTGAAAGGATTAAAATTGTAAAAAAAAAGAAAAAGAGAA
TATGAAGAAGAACATGAACGAAAAGAAAATACTAATTCATTCAATAAAATTAACAATTAC
AGATAATATAGAACCAATTGAAATATTATTTTGGAAATTGTTTAGAAATAAAGCAATTTA
TAAAAAGATATTCTCATTTATGTATAACCAATATTCATTTAGTTACGATTCAGTATCGTC
AATAACTAAACTAATAGATTCAAATCAAATTAGTATTTTAAGAGAAAAAGCTTATAGAAA
TTGTAGATATTTAGAATTTGGTGAAACTTGTTGGCGTAAAGAGTCTGATCAATCTAGTTG
GCGTAAAGATTTAATTTTAATTTATTTAAAGAAATTATTTGAAATAATTAAAAATGATTT
CAAATTTTATAGAAACTTTTTCAAAATTCAAAGGTATTATTACTCTTCACCAATTTATGT
ATCAACTGCAATAATACAATCAAAGAATTTAGAAATTTAGAAATTATTTATAAATGAATT
CAATTACCAACCAACAAAAACAGATCTTTTAAATTCAATCGAGACAGGTTCAAATAAAAT
CATCAAATATATATTAGAATTAAAAAAATCAAACTCACCATCATCAACATCATTTGAANN
NNNNNNNN
Length of 5' end seq. 668
3' end seq. ID CHQ690Z
3' end seq. 
>CHQ690Z.Seq
NNNNNNNNNNTTTATTAATGTCAATTGATCAATTTGATTATAATAATAATAGTAACGATT
TAAAAGAAAAAGGTGGTACTACTATTAATATTGAAAAAAATGCTTAAATTAATTATTCTA
GTTAAAGAATTAACACCTTATTTATTTGAAGCAAATAATTTTAAATTTTTAAATTGGTTT
TTAACAAACATTAAAGATTATCATCATCAATTAAAATTATCATCATCATCACTCAAAACA
AAACCAGATAAGGAATCAACTACGGTAGGAGATATTGTTTGTTCAATTTTATCTTTTATT
TCAAGCAATTCAAGATTAAAAATACTTGAATATATTCAAAACTTTAGTTTCATTTTAAAG
AATAAACCAAATAATGGAGTTTTAAATCCTGGTCAATTTTATTTTTATCACTTTCTTGTT
CAATTAATATTTCAGAATTTCTTTTACAATTCATTCCAATCATGAATTTAATTCAAATGA
AATCTTTGAACCATACTTTAAAAATAATTTTAAATATCTAACAAATTAATAAAATAATTG
ATGATGACCATTCTTCATACAAACCAGCATTACCAAAATTATTGGACATAATTATTTATT
TATTTACTTATTTAGATTTGGATGATTTGGATCAACAACAGCATCAAGTTATTTAGTAGT
GATAGTGGAACATCAAAAACTACTAATACTACACAGCTAACCAAAAGCAATAATAATCAA
TAATAAAAAAACTCAGGATTAATTATAGTAACAATAC
Length of 3' end seq. 757
Connected seq. ID CHQ690P
Connected seq. 
>CHQ690P.Seq
ACTTAAATAAACAAGAAATAATTGAAAGGATTAAAATTGTAAAAAAAAAGAAAAAGAGAA
TATGAAGAAGAACATGAACGAAAAGAAAATACTAATTCATTCAATAAAATTAACAATTAC
AGATAATATAGAACCAATTGAAATATTATTTTGGAAATTGTTTAGAAATAAAGCAATTTA
TAAAAAGATATTCTCATTTATGTATAACCAATATTCATTTAGTTACGATTCAGTATCGTC
AATAACTAAACTAATAGATTCAAATCAAATTAGTATTTTAAGAGAAAAAGCTTATAGAAA
TTGTAGATATTTAGAATTTGGTGAAACTTGTTGGCGTAAAGAGTCTGATCAATCTAGTTG
GCGTAAAGATTTAATTTTAATTTATTTAAAGAAATTATTTGAAATAATTAAAAATGATTT
CAAATTTTATAGAAACTTTTTCAAAATTCAAAGGTATTATTACTCTTCACCAATTTATGT
ATCAACTGCAATAATACAATCAAAGAATTTAGAAATTTAGAAATTATTTATAAATGAATT
CAATTACCAACCAACAAAAACAGATCTTTTAAATTCAATCGAGACAGGTTCAAATAAAAT
CATCAAATATATATTAGAATTAAAAAAATCAAACTCACCATCATCAACATCATTTGAA--
--------TTTATTAATGTCAATTGATCAATTTGATTATAATAATAATAGTAACGATTTA
AAAGAAAAAGGTGGTACTACTATTAATATTGAAAAAAATGCTTAAATTAATTATTCTAGT
TAAAGAATTAACACCTTATTTATTTGAAGCAAATAATTTTAAATTTTTAAATTGGTTTTT
AACAAACATTAAAGATTATCATCATCAATTAAAATTATCATCATCATCACTCAAAACAAA
ACCAGATAAGGAATCAACTACGGTAGGAGATATTGTTTGTTCAATTTTATCTTTTATTTC
AAGCAATTCAAGATTAAAAATACTTGAATATATTCAAAACTTTAGTTTCATTTTAAAGAA
TAAACCAAATAATGGAGTTTTAAATCCTGGTCAATTTTATTTTTATCACTTTCTTGTTCA
ATTAATATTTCAGAATTTCTTTTACAATTCATTCCAATCATGAATTTAATTCAAATGAAA
TCTTTGAACCATACTTTAAAAATAATTTTAAATATCTAACAAATTAATAAAATAATTGAT
GATGACCATTCTTCATACAAACCAGCATTACCAAAATTATTGGACATAATTATTTATTTA
TTTACTTATTTAGATTTGGATGATTTGGATCAACAACAGCATCAAGTTATTTAGTAGTGA
TAGTGGAACATCAAAAACTACTAATACTACACAGCTAACCAAAAGCAATAATAATCAATA
ATAAAAAAACTCAGGATTAATTATAGTAACAATAC
Length of connected seq. 1405
Full length Seq ID -
Full length Seq. -
Length of full length seq. -