>CHQ634 (CHQ634Q) /CSM/CH/CHQ6-B/CHQ634Q.Seq.d/
AGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCAAAGAGT
GATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTATTGGT
TATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAAATGT
AAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTGGGAA
GACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATCAGCA
TCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTATTGCC
GATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGTTGAT
AAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCGTCCA
GGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCAATGT
AAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAGATGG
GCTGTTCAATTTCCTGATGATCTTTCAAAAAATAAATTCCTTTCAACTTTTAAATATTCA
AAAGATXXXXXXXXXX

SKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKC
KCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSIA
DNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQC
KGWISGFTKCDWKGDSIERWAVQFPDDLSKNKFLSTFKYSK---

Frame A:
SKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLKC
KCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSIA
DNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQC
KGWISGFTKCDWKGDSIERWAVQFPDDLSKNKFLSTFKYSK---


Frame B:
akekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgii*nv
nvhkyhhlqi*ftgntfvgktnyqlkqlifhlksmiqnqhqrykerni*rhygklkivlp
it*rdqqlktsfniikvmliryhqfiyfilsligc*kvvqvdvqlvrisiyfsmvsninv
kvgfqvsqnvigkviqlkdglfnflmifqkinsfqllniqk---


Frame C:
qkkngnkkyisl*d*icke**inmfnlskry**rsssywl*nkiktl*wngcimasfkm*
mststiiyrfnslgipslgrpiin*nnlffi*kv*skisirgtkreifkgimgs*r*ycr
*legtsn*khhsi**rlc**gitssftsysl*ldvkrssr*msnl*efrytfqwyrism*
rldfrfhkm*ler*fn*kmgcsis**sfkk*ipfnf*ifkr---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ634 (CHQ634Q) /CSM/CH/CHQ6-B/CHQ634Q.Seq.d/                       1320   0.0
CHH590 (CHH590Q) /CSM/CH/CHH5-D/CHH590Q.Seq.d/                       1296   0.0
AHJ311 (AHJ311Q) /CSM/AH/AHJ3-A/AHJ311Q.Seq.d/                       1296   0.0
CFK359 (CFK359Q) /CSM/CF/CFK3-C/CFK359Q.Seq.d/                       1287   0.0
AHL170 (AHL170Q) /CSM/AH/AHL1-C/AHL170Q.Seq.d/                       1285   0.0
SHD815 (SHD815Q) /CSM/SH/SHD8-A/SHD815Q.Seq.d/                       1265   0.0
AHL736 (AHL736Q) /CSM/AH/AHL7-B/AHL736Q.Seq.d/                       1263   0.0
CHQ835 (CHQ835Q) /CSM/CH/CHQ8-B/CHQ835Q.Seq.d/                       1259   0.0
AHN542 (AHN542Q) /CSM/AH/AHN5-B/AHN542Q.Seq.d/                       1257   0.0
SHJ436 (SHJ436Q) /CSM/SH/SHJ4-B/SHJ436Q.Seq.d/                       1249   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene).  1312   0.0    1
AC127465|AC127465.3 Didelphis virginiana clone LB3-97M17, complete sequence.    38   0.038  4
AC025807|AC025807.2 Homo sapiens clone RP11-657G2, WORKING DRAFT SEQUENCE, 15 unordered pieces.    50   0.060  1
AC107307|AC107307.3 Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    50   0.060  1
AC137857|AC137857.4 Mus musculus clone RP24-511F5, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48   0.24   1
BX119978|BX119978.6 Mouse DNA sequence from clone RP23-354H3 on chromosome X.    48   0.24   1
AC117710|AC117710.3 Mus musculus clone RP23-480H15, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40   0.44   5
AC014505|AC014505.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    38   0.46   3
BX936323|BX936323.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-213J22.    36   0.49   2
CR854911|CR854911.13 Zebrafish DNA sequence from clone DKEY-46O18 in linkage group 9.    36   0.49   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9ZP54) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    75   2e-12
(Q7EYV7) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    72   1e-11
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    72   2e-11
(Q9ZSV1) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    70   7e-11
(P18493) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...    70   7e-11
GM894209_1(GM894209|pid:none) Sequence 10 from Patent EP1997899.       69   1e-10
AJ222589_1(AJ222589|pid:none) Zea mays mRNA for poly(ADP-ribose)...    69   1e-10
(P35875) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    68   3e-10
AM427768_1(AM427768|pid:none) Vitis vinifera contig VV78X161143....    68   3e-10
(P31669) RecName: Full=Poly [ADP-ribose] polymerase;          Sh...    65   2e-09

 psg: 0.58  gvh: 0.23  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CHQ634 is nuc

>CHQ634F.Seq
AGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATATGCAAAGAGT
GATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTATTGGT
TATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAAATGT
AAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTGGGAA
GACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATCAGCA
TCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTATTGCC
GATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGTTGAT
AAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCGTCCA
GGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCAATGT
AAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAGATGG
GCTGTTCAATTTCCTGATGATCTTTCAAAAAATAAATTCCTTTCAACTTTTAAATATTCA
AAAGATNNNNNNNNNN