CHQ621 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHQ621
Library	CH (Link to library)
Clone ID	CHQ621 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11927-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHQ6-A/CHQ621Q.Seq.d/
Representative seq. ID	CHQ621P (Link to Original site)
Representative DNA sequence	>CHQ621 (CHQ621Q) /CSM/CH/CHQ6-A/CHQ621Q.Seq.d/ AGACAATTTGCAAATAAGGTGTTACAATTGTATCGTCCAGGTGATATCATTTGGGTACAT GGTATCGAGTTATTGACATTACCGAGACTATTACGTAAATTAAATGCTTCAATGTTTGTT GGCTTATTTTTACATTCTCCATTCCCATCGGTTGAAGTATTTAGATGTGTTTCAAGTAGA AAGCAAATTCTCAAAGGAATGTTGGGTGCTAATTTAGTCGCTTTTCAAGCCTATTCTTAC TCTCGTTATTTCTGTCAATCATGTACAAGATTATTGGGTACACCAGCTGGATTCGATAGT GTAAAATTTAATGATAAAACCGATGATAAGAATGGTCGCAACAGTGGTACAAACAATGAA CGTATTACAAAGATATCAGTATTCTCTGAAGGTATTGACCCAAATGTAACTCTACAAATA ATATCACACGAATCAACTAAACAAAGAATCAATGAATTAAAAGAAACTTTTAAAGGTAAA ACTATTTTCATTTCAAAGGATCAAGGTGAAGCAAATGAAGGTACAAAGAATAAACTTTTA GCTTTTGAAAGTTTCTTAAAAAGAAATCCATCATTAGTTAAAGATGTTGTATTATTTTTA ATTTGTGAAXXXXXXXXXXTTTTGGAGAATATACCAGGTGTTGGGTTAGGTTGTGAACAT GGCTCTTTCTTAAAATCATCAACCGGTATTCATGGTGGTATTGAAGAATGGCAAAATCTA TCAGAGGGTATCGATTTATCATGGAAAGAGATGGTGGTACCTATATTGGAACATTTCTGT GAACGTATACCAGGTTCATCTTTGGTAGTAAATAAAGTGACCGTTGCTTTCTCCTATGAA AATTGTTTCTCTGAATATAGTAGTGAGAATGCTCAAGAGTTACTCACAACTCTAATGGAA GTAGCTGGTAAAACTCCAATCGATATTTCAAATTCAAACAAAGTCATTGAAATTAAACCA TCAGGTACCGGTAGTAGTATTGCAATGAAAAAAGTAATGGAAGAGAATCCTGAAATTGAT TTCATGCTTTGTATTGGTGATGAAAAGACTGAACAAGGTGTTTTTGACCTATTGGATAGA TTAAATCCAAATCATTTCGCTGTTTCCGTAGGTAAAAAGAAATCTTATACAAAATATTTT GTAAATAATCAAAATCAAGTTTTATCAATGTTGGAATTGGTCTCAAATTATTTAAATGTT TCTTCACCTCCTACAAATTTTCATTCATACTTAAATTCAATCTCATTAAAAGCAGAATCA AGTCCAAGGTGAAACTTCAACTCCAAATCTACCATATTCTTTACCAATTTAAAAAATT
sequence update	2002.10.25
Translated Amino Acid sequence	RQFANKVLQLYRPGDIIWVHGIELLTLPRLLRKLNASMFVGLFLHSPFPSVEVFRCVSSR KQILKGMLGANLVAFQAYSYSRYFCQSCTRLLGTPAGFDSVKFNDKTDDKNGRNSGTNNE RITKISVFSEGIDPNVTLQIISHESTKQRINELKETFKGKTIFISKDQGEANEGTKNKLL AFESFLKRNPSLVKDVVLFLICE--- ---LENIPGVGLGCEHGSFLKSSTGIHGGIEEWQNLSEGIDLSWKEMVVPILEHFCERIP GSSLVVNKVTVAFSYENCFSEYSSENAQELLTTLMEVAGKTPIDISNSNKVIEIKPSGTG SSIAMKKVMEENPEIDFMLCIGDEKTEQGVFDLLDRLNPNHFAVSVGKKKSYTKYFVNNQ NQVLSMLELVSNYLNVSSPPTNFHSYLNSISLKAESSPR*nfnskstifftnlkn
Translated Amino Acid sequence (All Frames)	Frame A: RQFANKVLQLYRPGDIIWVHGIELLTLPRLLRKLNASMFVGLFLHSPFPSVEVFRCVSSR KQILKGMLGANLVAFQAYSYSRYFCQSCTRLLGTPAGFDSVKFNDKTDDKNGRNSGTNNE RITKISVFSEGIDPNVTLQIISHESTKQRINELKETFKGKTIFISKDQGEANEGTKNKLL AFESFLKRNPSLVKDVVLFLICE--- ---fwriyqvlgvvnmalsnhqpvfmvvlkngkiyqrvsiyhgkrwwylywnisvnvy qvhlw*ikpllspmkivslnivvrmlksysqlwklvklqsifqiqtkslklnhqvp vvvlqkkwkrilkliscfvlvmkrlnkvfltywidiqiislfpvkrnliqnilii kikfyqcwnwsqiimflhllqifihtiqshkqnqvqgetstpnlpyslpiki Frame B: dnlqircyncivqvisfgymvssyhyrdyyvnmlqcllayfyilhshrlkyldvfqve skfskecwvlislfkpiltlvisvnhvqdywvhqldsivnlmikpmirmvatvvqtmn vlqryqyslkvltqmlykyhtnqlnkesmnkkllkvklfsfqrikvkqmkvqrinf* llkvskeihhlkmlyyffv--- ---fgeytrcwvrltwlflkiinryswwyrmaksirgyrfimerdggtyigtfltyt rfifgsksdrcfllklfli*ecsrvthnsngsswnsnryfkfkqshntiryr *ycneksngresnfhalywkdtrcfpigiksksfrcfrrkeilykifcks kssfinvgiglklfkcfftsykfsfilkfnliksrikskvklqlqiyhilyqfkk Frame C: tickgvtivssryhlgtwyrviditetitikcfnvcwliftfsipigsimcfkk ansqrnvgcfsrfsslfllslflsimykiigytswircki*nrewsqqwykqt yykdisilrypkcnstnnitrintknqikrnfrnyfhfkgsrskryketfs fkflkkksiisrcciifnl--- ---LENIPGVGLGCEHGSFLKSSTGIHGGIEEWQNLSEGIDLSWKEMVVPILEHFCERIP GSSLVVNKVTVAFSYENCFSEYSSENAQELLTTLMEVAGKTPIDISNSNKVIEIKPSGTG SSIAMKKVMEENPEIDFMLCIGDEKTEQGVFDLLDRLNPNHFAVSVGKKKSYTKYFVNNQ NQVLSMLELVSNYLNVSSPPTNFHSYLNSISLKAESSPRnfnskstifftnlkn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHQ621 (CHQ621Q) /CSM/CH/CHQ6-A/CHQ621Q.Seq.d/ 2553 0.0 SSJ661 (SSJ661Q) /CSM/SS/SSJ6-C/SSJ661Q.Seq.d/ 1074 0.0 SHA384 (SHA384Q) /CSM/SH/SHA3-D/SHA384Q.Seq.d/ 999 0.0 SHA342 (SHA342Q) /CSM/SH/SHA3-B/SHA342Q.Seq.d/ 991 0.0 SHF436 (SHF436Q) /CSM/SH/SHF4-B/SHF436Q.Seq.d/ 944 0.0 SSL866 (SSL866Q) /CSM/SS/SSL8-C/SSL866Q.Seq.d/ 817 0.0 VHA432 (VHA432Q) /CSM/VH/VHA4-B/VHA432Q.Seq.d/ 46 0.001 SSJ689 (SSJ689Q) /CSM/SS/SSJ6-D/SSJ689Q.Seq.d/ 46 0.001 SHF202 (SHF202Q) /CSM/SH/SHF2-A/SHF202Q.Seq.d/ 46 0.001 SHE467 (SHE467Q) /CSM/SH/SHE4-C/SHE467Q.Seq.d/ 46 0.001
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N CC506189\|CC506189.1 CH240_347O4.TARBAC13P2 CHORI-240 Bos taurus genomic cloneCH240_347O4, genomic survey sequence. 42 0.024 2 AR707083\|AR707083.1 Sequence 26 from patent US 6933145. 42 0.14 6 AX392736\|AX392736.1 Sequence 26 from Patent WO0212526. 42 0.14 6 CR962129\|CR962129.1 Medicago truncatula chromosome 5 clone mth2-28m4, WORKING DRAFT SEQUENCE, 4 ordered pieces. 40 0.20 7 AC109006\|AC109006.5 Rattus norvegicus clone CH230-44I19, * SEQUENCING IN PROGRESS , 13 unordered pieces. 36 0.25 2 AC136090\|AC136090.1 Rattus norvegicus clone CH230-480D12, SEQUENCING IN PROGRESS , 50 unordered pieces. 36 0.26 2 AC116630\|AC116630.4 Homo sapiens BAC clone RP11-395J1 from 4, complete sequence. 36 0.37 5 AC135662\|AC135662.2 Rattus norvegicus clone CH230-49A6, SEQUENCING IN PROGRESS , 2 unordered pieces. 48 0.47 1 AC117280\|AC117280.5 Rattus norvegicus clone CH230-330C18, SEQUENCING IN PROGRESS , 4 unordered pieces. 48 0.47 1 AC106976\|AC106976.6 Rattus norvegicus clone CH230-291E19, SEQUENCING IN PROGRESS *, 42 unordered pieces. 48 0.47 1
dna update	2005.11. 8
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CU633870_115(CU633870\|pid:none) Podospora anserina genomic DNA c... 138 4e-31 CP000581_241(CP000581\|pid:none) Ostreococcus lucimarinus CCE9901... 130 8e-29 FJ167677_1(FJ167677\|pid:none) Triticum aestivum trehalose-6-P sy... 130 8e-29 AY190523_1(AY190523\|pid:none) Emericella nidulans trehalose-6-ph... 129 2e-28 AC186754_2(AC186754\|pid:none) Musa balbisiana clone MBP_81C12, c... 128 4e-28 CR380954_95(CR380954\|pid:none) Candida glabrata strain CBS138 ch... 128 4e-28 (Q9FZ57) RecName: Full=Probable alpha,alpha-trehalose-phosphate ... 128 5e-28 AM476587_2(AM476587\|pid:none) Vitis vinifera contig VV78X118228.... 127 6e-28 EF151131_1(EF151131\|pid:none) Solanum lycopersicum trehalose-pho... 125 2e-27 A93399_1(A93399\|pid:none) Sequence 3 from Patent WO9742327. 124 7e-27
protein update	2009. 4.12
PSORT	psg: 0.67 gvh: 0.60 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 32.0 %: cytoplasmic 20.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vesicles of secretory system >> prediction for CHQ621 is nuc
5' end seq. ID	CHQ621F
5' end seq.	>CHQ621F.Seq AGACAATTTGCAAATAAGGTGTTACAATTGTATCGTCCAGGTGATATCATTTGGGTACAT GGTATCGAGTTATTGACATTACCGAGACTATTACGTAAATTAAATGCTTCAATGTTTGTT GGCTTATTTTTACATTCTCCATTCCCATCGGTTGAAGTATTTAGATGTGTTTCAAGTAGA AAGCAAATTCTCAAAGGAATGTTGGGTGCTAATTTAGTCGCTTTTCAAGCCTATTCTTAC TCTCGTTATTTCTGTCAATCATGTACAAGATTATTGGGTACACCAGCTGGATTCGATAGT GTAAAATTTAATGATAAAACCGATGATAAGAATGGTCGCAACAGTGGTACAAACAATGAA CGTATTACAAAGATATCAGTATTCTCTGAAGGTATTGACCCAAATGTAACTCTACAAATA ATATCACACGAATCAACTAAACAAAGAATCAATGAATTAAAAGAAACTTTTAAAGGTAAA ACTATTTTCATTTCAAAGGATCAAGGTGAAGCAAATGAAGGTACAAAGAATAAACTTTTA GCTTTTGAAAGTTTCTTAAAAAGAAATCCATCATTAGTTAAAGATGTTGTATTATTTTTA ATTTGTGAANNNNNNNNNN
Length of 5' end seq.	619
3' end seq. ID	CHQ621Z
3' end seq.	>CHQ621Z.Seq NNNNNNNNNNTTTTGGAGAATATACCAGGTGTTGGGTTAGGTTGTGAACATGGCTCTTTC TTAAAATCATCAACCGGTATTCATGGTGGTATTGAAGAATGGCAAAATCTATCAGAGGGT ATCGATTTATCATGGAAAGAGATGGTGGTACCTATATTGGAACATTTCTGTGAACGTATA CCAGGTTCATCTTTGGTAGTAAATAAAGTGACCGTTGCTTTCTCCTATGAAAATTGTTTC TCTGAATATAGTAGTGAGAATGCTCAAGAGTTACTCACAACTCTAATGGAAGTAGCTGGT AAAACTCCAATCGATATTTCAAATTCAAACAAAGTCATTGAAATTAAACCATCAGGTACC GGTAGTAGTATTGCAATGAAAAAAGTAATGGAAGAGAATCCTGAAATTGATTTCATGCTT TGTATTGGTGATGAAAAGACTGAACAAGGTGTTTTTGACCTATTGGATAGATTAAATCCA AATCATTTCGCTGTTTCCGTAGGTAAAAAGAAATCTTATACAAAATATTTTGTAAATAAT CAAAATCAAGTTTTATCAATGTTGGAATTGGTCTCAAATTATTTAAATGTTTCTTCACCT CCTACAAATTTTCATTCATACTTAAATTCAATCTCATTAAAAGCAGAATCAAGTCCAAGG TGAAACTTCAACTCCAAATCTACCATATTCTTTACCAATTTAAAAAATT
Length of 3' end seq.	709
Connected seq. ID	CHQ621P
Connected seq.	>CHQ621P.Seq AGACAATTTGCAAATAAGGTGTTACAATTGTATCGTCCAGGTGATATCATTTGGGTACAT GGTATCGAGTTATTGACATTACCGAGACTATTACGTAAATTAAATGCTTCAATGTTTGTT GGCTTATTTTTACATTCTCCATTCCCATCGGTTGAAGTATTTAGATGTGTTTCAAGTAGA AAGCAAATTCTCAAAGGAATGTTGGGTGCTAATTTAGTCGCTTTTCAAGCCTATTCTTAC TCTCGTTATTTCTGTCAATCATGTACAAGATTATTGGGTACACCAGCTGGATTCGATAGT GTAAAATTTAATGATAAAACCGATGATAAGAATGGTCGCAACAGTGGTACAAACAATGAA CGTATTACAAAGATATCAGTATTCTCTGAAGGTATTGACCCAAATGTAACTCTACAAATA ATATCACACGAATCAACTAAACAAAGAATCAATGAATTAAAAGAAACTTTTAAAGGTAAA ACTATTTTCATTTCAAAGGATCAAGGTGAAGCAAATGAAGGTACAAAGAATAAACTTTTA GCTTTTGAAAGTTTCTTAAAAAGAAATCCATCATTAGTTAAAGATGTTGTATTATTTTTA ATTTGTGAA----------TTTTGGAGAATATACCAGGTGTTGGGTTAGGTTGTGAACAT GGCTCTTTCTTAAAATCATCAACCGGTATTCATGGTGGTATTGAAGAATGGCAAAATCTA TCAGAGGGTATCGATTTATCATGGAAAGAGATGGTGGTACCTATATTGGAACATTTCTGT GAACGTATACCAGGTTCATCTTTGGTAGTAAATAAAGTGACCGTTGCTTTCTCCTATGAA AATTGTTTCTCTGAATATAGTAGTGAGAATGCTCAAGAGTTACTCACAACTCTAATGGAA GTAGCTGGTAAAACTCCAATCGATATTTCAAATTCAAACAAAGTCATTGAAATTAAACCA TCAGGTACCGGTAGTAGTATTGCAATGAAAAAAGTAATGGAAGAGAATCCTGAAATTGAT TTCATGCTTTGTATTGGTGATGAAAAGACTGAACAAGGTGTTTTTGACCTATTGGATAGA TTAAATCCAAATCATTTCGCTGTTTCCGTAGGTAAAAAGAAATCTTATACAAAATATTTT GTAAATAATCAAAATCAAGTTTTATCAATGTTGGAATTGGTCTCAAATTATTTAAATGTT TCTTCACCTCCTACAAATTTTCATTCATACTTAAATTCAATCTCATTAAAAGCAGAATCA AGTCCAAGGTGAAACTTCAACTCCAAATCTACCATATTCTTTACCAATTTAAAAAATT
Length of connected seq.	1308
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas