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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ580
Library CH
(Link to library)
Clone ID CHQ580
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12032-1|Contig-U16512-1
Original site URL
Representative seq. ID CHQ580P
(Link to Original site)
Representative DNA sequence 
>CHQ580 (CHQ580Q) /CSM/CH/CHQ5-D/CHQ580Q.Seq.d/
AAGCAACAGCAACAACAGCAAATGCAAAATAGAAATAATAATTACCAACAACAAAATAAT
TCTAGAAATGTTATTAATGAAGATAATTTTAATAATATTCAACTTCCAACAACTACAACA
ACAACAACAACTAATAATAATCAAAAAGATTCATCACCTCCAACAAAGAGTAATAATAAT
AATAATAATAATCAAAATAAAAAGATGAATGAATTTGAGGATGGATTTTTTAATGTACCA
ATTAATATGGTCGGAGATGATGGAGATTCTAGATGGGAAGAGGAATCCAATGGTATGCCA
GTATCAGGATTTTACGATTTAGAAGTTANAGATCCACGTACTCATGCTGAGGAAAATGGT
GTTTACGTTTCATATCAAATCATTGGTAAATATAAAGATGATGAATCCGATCAACAACAA
CAACAACAACAACAACAAGAAGXXXXXXXXXXTTCTTTCAGTCCACTAGTGATCTAACTT
TGTTTATGATGAAAGCAAAGGAATTGGCATTGGTTTCATCTCAGATTCAAATCGTTGAAC
TTTGTGTACTCTATAAGACCTATGGTGCTGATGTTGTCGATCATATGGTAACTCAAATGT
TTAATAAAAAGGGTGAATCAAAATCATTCTTTTCCCTCTTTGAAATGGTTAAAGGTTTGG
TAGAACAAATTCGTTTGAAAAATATTCCAAAAACCCAAGAATCAAATGGTACCTCTGTTT
GGGATGGTATCAAGTTTGTTATGACTCAAATCGATACTATAAACTCAAATTTGAAAGAAC
AATACTTTGAATTGGGTCGTTTATTGGGTAAAGGTTTAATGTTTTTAGATCCACCAACCT
ATAGACAATGTAAAGCCATAGCCTTACCAATCGATAGAGAATTTAGTTCCCCTCAAGAAC
GTAGCCAAAAGTGTGGTGATCTTGATGAATTGTTACATTATATATATAATCTTAATCGTG
GTAGTACCTATAATTCTCGTTTAGAATGTGCAATCGAAGAAATGACCACTGATCTCTTAA
ATAATATTCAAAGATCTTGGACAAATTACCTCTTTAATAGTGATTATAATTTAGTTTTAC
AATTAAAAGAAAGATCAAAAAATAGAGTTAG
sequence update 2002.10.25
Translated Amino Acid sequence 
KQQQQQQMQNRNNNYQQQNNSRNVINEDNFNNIQLPTTTTTTTTNNNQKDSSPPTKSNNN
NNNNQNKKMNEFEDGFFNVPINMVGDDGDSRWEEESNGMPVSGFYDLEVXDPRTHAEENG
VYVSYQIIGKYKDDESDQQQQQQQQQE---

---FFQSTSDLTLFMMKAKELALVSSQIQIVELCVLYKTYGADVVDHMVTQMFNKKGESK
SFFSLFEMVKGLVEQIRLKNIPKTQESNGTSVWDGIKFVMTQIDTINSNLKEQYFELGRL
LGKGLMFLDPPTYRQCKAIALPIDREFSSPQERSQKCGDLDELLHYIYNLNRGSTYNSRL
ECAIEEMTTDLLNNIQRSWTNYLFNSDYNLVLQLKERSKNRV
Translated Amino Acid sequence (All Frames) 
Frame A:
KQQQQQQMQNRNNNYQQQNNSRNVINEDNFNNIQLPTTTTTTTTNNNQKDSSPPTKSNNN
NNNNQNKKMNEFEDGFFNVPINMVGDDGDSRWEEESNGMPVSGFYDLEVXDPRTHAEENG
VYVSYQIIGKYKDDESDQQQQQQQQQE---

---FFQSTSDLTLFMMKAKELALVSSQIQIVELCVLYKTYGADVVDHMVTQMFNKKGESK
SFFSLFEMVKGLVEQIRLKNIPKTQESNGTSVWDGIKFVMTQIDTINSNLKEQYFELGRL
LGKGLMFLDPPTYRQCKAIALPIDREFSSPQERSQKCGDLDELLHYIYNLNRGSTYNSRL
ECAIEEMTTDLLNNIQRSWTNYLFNSDYNLVLQLKERSKNRV

Frame B:
snsnnskckieiiitnnkiilemllmkiiliifnfqqlqqqqqliiikkihhlqqrviii
iiiikikr*mnlrmdflmyqliwsemmeildgkrnpmvcqyqdfti*klxihvlmlrkmv
ftfhikslvnikmmnpinnnnnnnnkk---

---sfsplvi*lcl**kqrnwhwfhlrfkslnfvysirpmvlmlsiiw*lkclikrvnqn
hsfpslkwlkvw*nkfv*kifqkpknqmvplfgmvssll*lksil*tqi*knntlnwvvy
wvkv*cf*ihqpidnvkp*pyqsienlvplknvaksvvilmncyiiyiilivvvpiilv*
nvqskk*plis*iifkdlgqitsliviii*fyn*kkdqkiel

Frame C:
atattanak*k**lpttk*f*kcy**r*f**ystsnnynnnnn***skrfitsnke****
***sk*kde*i*gwif*ctn*ygrr*wrf*mgrgiqwyasirilrfrsxrstysc*gkwc
lrfisnhw*i*r**irsttttttttr---

---lsvh**snfvydeskgigigfisdsnr*tlctl*dlwc*ccrsygnsnv**kg*iki
ilfpl*ng*rfgrtnsfekysknprikwylclgwyqvcydsnryyklkfertil*igsfi
g*rfnvfrstnl*tm*shsltnr*ri*fpsrt*pkvw*s**ivtlyi*s*sw*yl*fsfr
mcnrrndh*slk*yskildklpl***l*fsftikrkikk*s*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ580 (CHQ580Q) /CSM/CH/CHQ5-D/CHQ580Q.Seq.d/                       1306   0.0
SHA865 (SHA865Q) /CSM/SH/SHA8-C/SHA865Q.Seq.d/                       1277   0.0
CHF896 (CHF896Q) /CSM/CH/CHF8-D/CHF896Q.Seq.d/                       1257   0.0
AHD879 (AHD879Q) /CSM/AH/AHD8-D/AHD879Q.Seq.d/                       1247   0.0
AFM836 (AFM836Q) /CSM/AF/AFM8-B/AFM836Q.Seq.d/                       1247   0.0
AHH781 (AHH781Q) /CSM/AH/AHH7-D/AHH781Q.Seq.d/                       1243   0.0
CHF436 (CHF436Q) /CSM/CH/CHF4-B/CHF436Q.Seq.d/                       1237   0.0
AHD189 (AHD189Q) /CSM/AH/AHD1-D/AHD189Q.Seq.d/                       1235   0.0
CHR271 (CHR271Q) /CSM/CH/CHR2-C/CHR271Q.Seq.d/                       1179   0.0
CHI372 (CHI372Q) /CSM/CH/CHI3-C/CHI372Q.Seq.d/                       1178   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR392029|CR392029.11 Zebrafish DNA sequence from clone DKEY-188H10 in linkage group 3.    40   0.001  5
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   0.058  11
CL782250|CL782250.1 OR_BBa0098E11.r OR_BBa Oryza rufipogon genomic clone OR_BBa0098E11 3', genomic survey sequence.    46   0.29   2
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    34   0.31   9
DV406802|DV406802.1 NADV458TR Aedes aegypti infected with Dengue virus Pool library Aedes aegypti cDNA clone NADV458, mRNA sequence.    48   0.39   1
DV406800|DV406800.1 NADV458TF Aedes aegypti infected with Dengue virus Pool library Aedes aegypti cDNA clone NADV458, mRNA sequence.    48   0.39   1
DV305807|DV305807.1 NABMV02TRB Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABMV02, mRNA sequence.    48   0.39   1
DV305761|DV305761.1 NABMV01TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NABMV01, mRNA sequence.    48   0.39   1
BX548066|BX548066.3 Zebrafish DNA sequence from clone CH211-226F1 in linkage group 20.    40   0.41   9
BX248585|BX248585.1 Blochmannia floridanus complete genome; segment 2/3.    34   0.54   10
dna update 2005.11. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017226_2667(AE017226|pid:none) Treponema denticola ATCC 35405,...    35   5.9
AP006878_2300(AP006878|pid:none) Thermococcus kodakarensis KOD1 ...    34   7.7
GM015171_339(GM015171|pid:none) Sequence 1 from Patent EP1923464.      34   7.7
protein update 2009. 4.12
PSORT 

 psg: 0.48  gvh: 0.28  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	 12.0 %: nuclear

>> prediction for CHQ580 is cyt
5' end seq. ID CHQ580F
5' end seq. 
>CHQ580F.Seq
AAGCAACAGCAACAACAGCAAATGCAAAATAGAAATAATAATTACCAACAACAAAATAAT
TCTAGAAATGTTATTAATGAAGATAATTTTAATAATATTCAACTTCCAACAACTACAACA
ACAACAACAACTAATAATAATCAAAAAGATTCATCACCTCCAACAAAGAGTAATAATAAT
AATAATAATAATCAAAATAAAAAGATGAATGAATTTGAGGATGGATTTTTTAATGTACCA
ATTAATATGGTCGGAGATGATGGAGATTCTAGATGGGAAGAGGAATCCAATGGTATGCCA
GTATCAGGATTTTACGATTTAGAAGTTANAGATCCACGTACTCATGCTGAGGAAAATGGT
GTTTACGTTTCATATCAAATCATTGGTAAATATAAAGATGATGAATCCGATCAACAACAA
CAACAACAACAACAACAAGAAGNNNNNNNNNN
Length of 5' end seq. 452
3' end seq. ID CHQ580Z
3' end seq. 
>CHQ580Z.Seq
NNNNNNNNNNTTCTTTCAGTCCACTAGTGATCTAACTTTGTTTATGATGAAAGCAAAGGA
ATTGGCATTGGTTTCATCTCAGATTCAAATCGTTGAACTTTGTGTACTCTATAAGACCTA
TGGTGCTGATGTTGTCGATCATATGGTAACTCAAATGTTTAATAAAAAGGGTGAATCAAA
ATCATTCTTTTCCCTCTTTGAAATGGTTAAAGGTTTGGTAGAACAAATTCGTTTGAAAAA
TATTCCAAAAACCCAAGAATCAAATGGTACCTCTGTTTGGGATGGTATCAAGTTTGTTAT
GACTCAAATCGATACTATAAACTCAAATTTGAAAGAACAATACTTTGAATTGGGTCGTTT
ATTGGGTAAAGGTTTAATGTTTTTAGATCCACCAACCTATAGACAATGTAAAGCCATAGC
CTTACCAATCGATAGAGAATTTAGTTCCCCTCAAGAACGTAGCCAAAAGTGTGGTGATCT
TGATGAATTGTTACATTATATATATAATCTTAATCGTGGTAGTACCTATAATTCTCGTTT
AGAATGTGCAATCGAAGAAATGACCACTGATCTCTTAAATAATATTCAAAGATCTTGGAC
AAATTACCTCTTTAATAGTGATTATAATTTAGTTTTACAATTAAAAGAAAGATCAAAAAA
TAGAGTTAG
Length of 3' end seq. 669
Connected seq. ID CHQ580P
Connected seq. 
>CHQ580P.Seq
AAGCAACAGCAACAACAGCAAATGCAAAATAGAAATAATAATTACCAACAACAAAATAAT
TCTAGAAATGTTATTAATGAAGATAATTTTAATAATATTCAACTTCCAACAACTACAACA
ACAACAACAACTAATAATAATCAAAAAGATTCATCACCTCCAACAAAGAGTAATAATAAT
AATAATAATAATCAAAATAAAAAGATGAATGAATTTGAGGATGGATTTTTTAATGTACCA
ATTAATATGGTCGGAGATGATGGAGATTCTAGATGGGAAGAGGAATCCAATGGTATGCCA
GTATCAGGATTTTACGATTTAGAAGTTANAGATCCACGTACTCATGCTGAGGAAAATGGT
GTTTACGTTTCATATCAAATCATTGGTAAATATAAAGATGATGAATCCGATCAACAACAA
CAACAACAACAACAACAAGAAG----------TTCTTTCAGTCCACTAGTGATCTAACTT
TGTTTATGATGAAAGCAAAGGAATTGGCATTGGTTTCATCTCAGATTCAAATCGTTGAAC
TTTGTGTACTCTATAAGACCTATGGTGCTGATGTTGTCGATCATATGGTAACTCAAATGT
TTAATAAAAAGGGTGAATCAAAATCATTCTTTTCCCTCTTTGAAATGGTTAAAGGTTTGG
TAGAACAAATTCGTTTGAAAAATATTCCAAAAACCCAAGAATCAAATGGTACCTCTGTTT
GGGATGGTATCAAGTTTGTTATGACTCAAATCGATACTATAAACTCAAATTTGAAAGAAC
AATACTTTGAATTGGGTCGTTTATTGGGTAAAGGTTTAATGTTTTTAGATCCACCAACCT
ATAGACAATGTAAAGCCATAGCCTTACCAATCGATAGAGAATTTAGTTCCCCTCAAGAAC
GTAGCCAAAAGTGTGGTGATCTTGATGAATTGTTACATTATATATATAATCTTAATCGTG
GTAGTACCTATAATTCTCGTTTAGAATGTGCAATCGAAGAAATGACCACTGATCTCTTAA
ATAATATTCAAAGATCTTGGACAAATTACCTCTTTAATAGTGATTATAATTTAGTTTTAC
AATTAAAAGAAAGATCAAAAAATAGAGTTAG
Length of connected seq. 1101
Full length Seq ID -
Full length Seq. -
Length of full length seq. -