>CHQ534 (CHQ534Q) /CSM/CH/CHQ5-B/CHQ534Q.Seq.d/
XXXXXXXXXXTGCCATCTCCNTGNGATGATTCCTCAATGCAATCTTATACCACTCGTTGT
ATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACC
CAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGAT
ATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTNTACCTCTGGTATT
CCATNTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCNCAATATGTTCCA
ATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGA
GTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATG
TGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCT
ATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAG

---PSPXDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDI
GYESADDSSSDNDGXTSGIPXGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRV
AATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFK

Frame A:
---aisxx*flnailyhslyfr*knnl*nc*tkyqllydptstnfk*il*mysrrf*m*y
wlrkcrr*qfr**wxylwysxwifrtiels*incfxicsnh*rklytrsnlyqikrfqks
rchtmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscfswswwfwflrf*


Frame B:
---PSPXDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDI
GYESADDSSSDNDGXTSGIPXGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRV
AATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFK


Frame C:
---hlxxmipqcnliplvvf*vkkqliellnqipivi*pnkhkfqinivnvqskilnvil
vtkvqtiavpimmvxplvfhxdlqnn*ivvnqllxnmfqslkkivhqvkpisnqkvsees
lphnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll*lvlvvlvstfl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ874 (VHJ874Q) /CSM/VH/VHJ8-D/VHJ874Q.Seq.d/                        997   0.0
VHQ494 (VHQ494Q) /CSM/VH/VHQ4-D/VHQ494Q.Seq.d/                        997   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                        997   0.0
VHQ371 (VHQ371Q) /CSM/VH/VHQ3-C/VHQ371Q.Seq.d/                        997   0.0
VHQ202 (VHQ202Q) /CSM/VH/VHQ2-A/VHQ202Q.Seq.d/                        997   0.0
VHQ157 (VHQ157Q) /CSM/VH/VHQ1-C/VHQ157Q.Seq.d/                        997   0.0
VHP781 (VHP781Q) /CSM/VH/VHP7-D/VHP781Q.Seq.d/                        997   0.0
VHP738 (VHP738Q) /CSM/VH/VHP7-B/VHP738Q.Seq.d/                        997   0.0
VHP682 (VHP682Q) /CSM/VH/VHP6-D/VHP682Q.Seq.d/                        997   0.0
VHP639 (VHP639Q) /CSM/VH/VHP6-B/VHP639Q.Seq.d/                        997   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CC750991|CC750991.1 ZMMBBb0131M23.r ZMMBBb Zea mays genomic clone ZMMBBb0131M23 3',genomic survey sequence.    40   0.33   2
BI772838|BI772838.1 kp46c08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:ATPB_CAEEL P46561 PROBABLE ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    34   0.52   2
CX590262|CX590262.1 TTE00030407 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    44   2.9    1
CX575668|CX575668.1 TTE00028484 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    44   2.9    1
BG619960|BG619960.1 602618158F1 NIH_MGC_79 Homo sapiens cDNA clone IMAGE:4731614 5', mRNA sequence.    44   2.9    1
AC022967|AC022967.2 Homo sapiens chromosome 4 clone RP11-406N23 map 4, LOW-PASS SEQUENCE SAMPLING.    44   2.9    1
AP001947|AP001947.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2026H24, WORKING DRAFT SEQUENCE, ordered pieces.    44   2.9    1
AC097478|AC097478.2 Homo sapiens BAC clone RP11-115D19 from 4, complete sequence.    44   2.9    1
AC079789|AC079789.7 Homo sapiens BAC clone RP11-475B2 from 4, complete sequence.    44   2.9    1
AP001091|AP001091.5 Homo sapiens genomic DNA, chromosome 18p clone:RP11-713N19, complete sequences.    44   2.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    73   5e-12
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    66   6e-10
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    64   3e-09
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    64   3e-09
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    62   9e-09
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    62   9e-09
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    62   1e-08
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    61   1e-08
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    60   2e-08
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    59   6e-08

 psg: 0.75  gvh: 0.36  alm: 0.22  top: 0.53  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHQ534 is cyt

>CHQ534Z.Seq
NNNNNNNNNNTGCCATCTCCNTGNGATGATTCCTCAATGCAATCTTATACCACTCGTTGT
ATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACC
CAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGAT
ATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTNTACCTCTGGTATT
CCATNTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCNCAATATGTTCCA
ATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGA
GTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATG
TGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCT
ATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAG