>CHQ410 (CHQ410Q) /CSM/CH/CHQ4-A/CHQ410Q.Seq.d/
AATTAATGAATTTAGGAAAGAATTATAATATTTTTTTTTTATATAAATTTTATNTGGGTT
TATAAAAAACTGNGTAGGGATAAATAATAANGGAAAGTAATAAATCATCATCCCNTGGNN
ATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATAXXXXXXXXXXTT
GCAGTTTCAGACATTTATGGANGATGACCCAAATGNAAGGGCCAANTAATAATTTGTATA
AAATGAATGNACAAATTCAACNACAACCAATTATTGGTGGTAGTGGTAATGTAATGAGAT
CNCAATTTAATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCNCCAAAAA
CGAGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGGTTGAAA
AGAATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAACTACCN
CTANTAAATCACCAGAGAAANCNATTATCGAATTGAAAAGATNTTTNGAAGAAAGTGGTT
TATTCNTTAAAAANAAAGGTCNTTACCTTTT

lmnlgknynifflykfyxgl*ktx*g*IIXESNKSSSXGXVSTSPSFLNNHHQFN---

---CSFRHLWXMTQMXGPXNNLYKMNXQIQXQPIIGGSGNVMRSQFNQTLPTIDQQPVIE
APKTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKXSTTXXKSPEKXIIELKRXXE
ESGLFXKXKGXYL

Frame A:
n**i*eriiifffyinfxwvykklxrdk**xkvinhhpxxmyqllhhf*iiiinli---

---lqfqtfmxddpnxrax**fv*nextnstttnyww*w*cneixi*snitnn*sttsy*
sxkneknefrftyvkw*stiig*kestygksknferyi*xfnyxx*itrexxyriekxfx
rkwfix*kxrslpf

Frame B:
inefrkel*yfffi*ilxgfiknxvginnxgk**iiipwxcinfsiifk*sssi*---

---CSFRHLWXMTQMXGPXNNLYKMNXQIQXQPIIGGSGNVMRSQFNQTLPTIDQQPVIE
APKTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKXSTTXXKSPEKXIIELKRXXE
ESGLFXKXKGXYL

Frame C:
lmnlgknynifflykfyxgl*ktx*g*IIXESNKSSSXGXVSTSPSFLNNHHQFN---

---avsdiygx*pkxkgqxiicik*mxkfnxnqllvvvvm**dxnlikhyqqlinnqllk
xqkree*v*ihvc*mvinnhwlkriniwqvqelrkvylnxqlplxnhqrxxlsn*kdxxk
kvvyslkxkvxtf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ410 (CHQ410Q) /CSM/CH/CHQ4-A/CHQ410Q.Seq.d/                        842   0.0
CHR195 (CHR195Q) /CSM/CH/CHR1-D/CHR195Q.Seq.d/                        591   e-168
CHO513 (CHO513Q) /CSM/CH/CHO5-A/CHO513Q.Seq.d/                        591   e-168
CHH704 (CHH704Q) /CSM/CH/CHH7-A/CHH704Q.Seq.d/                        591   e-168
CHF760 (CHF760Q) /CSM/CH/CHF7-C/CHF760Q.Seq.d/                        591   e-168
CHP810 (CHP810Q) /CSM/CH/CHP8-A/CHP810Q.Seq.d/                        589   e-167
CHO603 (CHO603Q) /CSM/CH/CHO6-A/CHO603Q.Seq.d/                        589   e-167
CHN147 (CHN147Q) /CSM/CH/CHN1-B/CHN147Q.Seq.d/                        589   e-167
CHI134 (CHI134Q) /CSM/CH/CHI1-B/CHI134Q.Seq.d/                        589   e-167
CHN820 (CHN820Q) /CSM/CH/CHN8-A/CHN820Q.Seq.d/                        583   e-165

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP008218|AP008218.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12.    46   0.47   2
AC024190|AC024190.2 Homo sapiens chromosome 8 clone RP11-435E3, WORKING DRAFT SEQUENCE, 39 unordered pieces.    46   0.78   1
CL909198|CL909198.1 OA_ABa0008N10.r OA_ABa Oryza australiensis genomic clone OA_ABa0008N10 3', genomic survey sequence.    46   0.78   1
CL810022|CL810022.1 OR_CBa0025A12.r OR_CBa Oryza rufipogon genomic clone OR_CBa0025A12 3', genomic survey sequence.    46   0.78   1
CL794575|CL794575.1 OR_CBa0004B09.r OR_CBa Oryza rufipogon genomic clone OR_CBa0004B09 3', genomic survey sequence.    46   0.78   1
CL724684|CL724684.1 OR_BBa0054F15.r OR_BBa Oryza rufipogon genomic clone OR_BBa0054F15 3', genomic survey sequence.    46   0.78   1
CW852818|CW852818.1 OG_BBa0084C15.f OG_BBa Oryza glaberrima genomic clone OG_BBa0084C15 5', genomic survey sequence.    46   0.78   1
CW756968|CW756968.1 OG_BBa0063N09.f OG_BBa Oryza glaberrima genomic clone OG_BBa0063N09 5', genomic survey sequence.    46   0.78   1
CW766225|CW766225.1 OG_BBa0078K16.r OG_BBa Oryza glaberrima genomic clone OG_BBa0078K16 3', genomic survey sequence.    46   0.78   1
CW676138|CW676138.1 OG_BBa0025G14.f OG_BBa Oryza glaberrima genomic clone OG_BBa0025G14 5', genomic survey sequence.    46   0.78   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 562,661,555

 psg: 0.88  gvh: 0.37  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.12
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for CHQ410 is nuc

>CHQ410F.Seq
AATTAATGAATTTAGGAAAGAATTATAATATTTTTTTTTTATATAAATTTTATNTGGGTT
TATAAAAAACTGNGTAGGGATAAATAATAANGGAAAGTAATAAATCATCATCCCNTGGNN
ATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATANNNNNNNNNN

>CHQ410Z.Seq
NNNNNNNNNNTTGCAGTTTCAGACATTTATGGANGATGACCCAAATGNAAGGGCCAANTA
ATAATTTGTATAAAATGAATGNACAAATTCAACNACAACCAATTATTGGTGGTAGTGGTA
ATGTAATGAGATCNCAATTTAATCAAACATTACCAACAATTGATCAACAACCAGTTATTG
AAGCNCCAAAAACGAGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAAT
CATTGGTTGAAAAGAATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAAT
NTTCAACTACCNCTANTAAATCACCAGAGAAANCNATTATCGAATTGAAAAGATNTTTNG
AAGAAAGTGGTTTATTCNTTAAAAANAAAGGTCNTTACCTTTT

>CHQ410P.Seq
AATTAATGAATTTAGGAAAGAATTATAATATTTTTTTTTTATATAAATTTTATNTGGGTT
TATAAAAAACTGNGTAGGGATAAATAATAANGGAAAGTAATAAATCATCATCCCNTGGNN
ATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATA----------TT
GCAGTTTCAGACATTTATGGANGATGACCCAAATGNAAGGGCCAANTAATAATTTGTATA
AAATGAATGNACAAATTCAACNACAACCAATTATTGGTGGTAGTGGTAATGTAATGAGAT
CNCAATTTAATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCNCCAAAAA
CGAGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGGTTGAAA
AGAATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAACTACCN
CTANTAAATCACCAGAGAAANCNATTATCGAATTGAAAAGATNTTTNGAAGAAAGTGGTT
TATTCNTTAAAAANAAAGGTCNTTACCTTTT