CHQ364
Library CH
(Link to library)
Clone ID CHQ364
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11289-1|Contig-U13132-1
Original site URL
Representative seq. ID CHQ364P
(Link to Original site)
Representative DNA sequence
>CHQ364 (CHQ364Q) /CSM/CH/CHQ3-C/CHQ364Q.Seq.d/
AAAATTAAGTGTAACAAGATTAATTGATGGATATAGAGCACATGGTCATTTAGCAGCAAA
TATTGATCCATTAGCAAGAATGGAAAGAATTAGAAGTCAATTATTAGATTTAGATCGTTA
TAATTTAGTTAAAGGTCAATCAATTCCATCAACTATTGATTTAATTAATCAAGATTTAAC
CAACCTTGATCAAGTTGTTAGTTTTCTTGAAAATGCATATTGTAATGATGTTACAGCACA
ATTTGATCATATTGAATCGATTGAAGAAAAAGCATGGCTCTATGANAAGTTTGNACXXXX
XXXXXXCGACGGTGCCGGTCCAGAGCATTCAAGTTGTCGTATTGAACGTTTCTTTCAATT
GAGTGATACCGAAGCTGTAAATGTCAAAGACGATACATTAATCAATCAAGAGACAAACTT
TTACTTTATCAATCCTTCAACTCCTGCAAATTATTTCCATGCACTTCGTAGACAAATGAT
TAGAAACTATCGTAAACCATTGATTGTCGCTGGTCCAAAAGTATTATTACGTCATCCAAA
TTGTTTCTCAACTTTAAATGAAATGGCACCAGGAACTCATTTCCAAACAGTTTTATCCGA
TCCTGATACCATCAATAACGCATCCACAATTAAACGTGTCATCTTTTGTAGTGGTAAAGT
ATTCTATGACCTCCAAGAGGAAAGAAAAGCAAAGAATTTCAATGATGTAGCAATCATTCG
TCTTGAACAAATCGCTCCATTCCCATATCAACGTATTCAAGAAGAAATCAATCGTTATTC
AAACGCTACTAAATTCGCTTGGGTTCAAGAAGAACAACAAAATGGTGGTTGTTGGTCATT
CGTTGAACCACGTTTCAAACAACGTTATCCACAAACTTCTCAAATTAAATATATTGGTAG
ACCACCTTTAGCTGCTTCTGCAATTGGTATCTCTTCAATTCATAAAAAAGAAGTTTCTCA
ATTATTAATTGATGCTTTTAATTTCTAAAAAATAAAAAAATAAAAAAATAAAAAAATAAA
AATAAAAATAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence
KLSVTRLIDGYRAHGHLAANIDPLARMERIRSQLLDLDRYNLVKGQSIPSTIDLINQDLT
NLDQVVSFLENAYCNDVTAQFDHIESIEEKAWLYXKFX---

---DGAGPEHSSCRIERFFQLSDTEAVNVKDDTLINQETNFYFINPSTPANYFHALRRQM
IRNYRKPLIVAGPKVLLRHPNCFSTLNEMAPGTHFQTVLSDPDTINNASTIKRVIFCSGK
VFYDLQEERKAKNFNDVAIIRLEQIAPFPYQRIQEEINRYSNATKFAWVQEEQQNGGCWS
FVEPRFKQRYPQTSQIKYIGRPPLAASAIGISSIHKKEVSQLLIDAFNF*kikk*knkki
kikin


Translated Amino Acid sequence (All Frames)
Frame A:
kikcnkin*wi*stwsfssky*siskngkn*ksiirfrsl*fs*rsinsiny*fn*srfn
qp*ssc*fs*kcil**cysti*sy*id*rksmal*xvx---

---rrcrsrafklsy*tflsie*yrsckcqrryinqsrdklllyqsfnscklfpcts*tn
d*kls*tidcrwsksiitssklflnfk*ngtrnsfpnsfirs*yhq*rihn*tchll*w*
sil*pprgkkskefq*csnhss*tnrsipistysrrnqslfkry*irlgsrrttkwwllv
ir*ttfqttlstnfsn*iyw*ttfscfcnwylfns*krsfsiin*cf*flknkkikk*kn
knknkl

Frame B:
KLSVTRLIDGYRAHGHLAANIDPLARMERIRSQLLDLDRYNLVKGQSIPSTIDLINQDLT
NLDQVVSFLENAYCNDVTAQFDHIESIEEKAWLYXKFX---

---DGAGPEHSSCRIERFFQLSDTEAVNVKDDTLINQETNFYFINPSTPANYFHALRRQM
IRNYRKPLIVAGPKVLLRHPNCFSTLNEMAPGTHFQTVLSDPDTINNASTIKRVIFCSGK
VFYDLQEERKAKNFNDVAIIRLEQIAPFPYQRIQEEINRYSNATKFAWVQEEQQNGGCWS
FVEPRFKQRYPQTSQIKYIGRPPLAASAIGISSIHKKEVSQLLIDAFNF*kikk*knkki
kikin

Frame C:
n*v*qd*lmdiehmvi*qqilih*qewkelevny*i*ivii*lkvnqfhqlli*liki*p
tlikllvflkmhivmmlqhnliilnrlkkkhgsmxslx---

---tvpvqsiqvvvlnvsfn*vipkl*msktih*sikrqtftlsilqllqiismhfvdk*
letivnh*lslvqkyyyviqivsql*mkwhqeliskqfypilipsithpqlnvssfvvvk
ysmtskrkekqrismm*qsfvlnkslhshinvfkkksiviqtllnslgfkknnkmvvvgh
slnhvsnnvihkllklnilvdhl*lllqlvslqfikkkflny*lmlliskk*knkkikk*
k*k*i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHQ364 (CHQ364Q) /CSM/CH/CHQ3-C/CHQ364Q.Seq.d/ 1883 0.0
CHR828 (CHR828Q) /CSM/CH/CHR8-B/CHR828Q.Seq.d/ 1300 0.0
VHC383 (VHC383Q) /CSM/VH/VHC3-D/VHC383Q.Seq.d/ 1275 0.0
CHE892 (CHE892Q) /CSM/CH/CHE8-D/CHE892Q.Seq.d/ 1162 0.0
SHC735 (SHC735Q) /CSM/SH/SHC7-B/SHC735Q.Seq.d/ 1132 0.0
SHA784 (SHA784Q) /CSM/SH/SHA7-D/SHA784Q.Seq.d/ 1122 0.0
SHD362 (SHD362Q) /CSM/SH/SHD3-C/SHD362Q.Seq.d/ 1114 0.0
VHK860 (VHK860Q) /CSM/VH/VHK8-C/VHK860Q.Seq.d/ 1096 0.0
VHN447 (VHN447Q) /CSM/VH/VHN4-B/VHN447Q.Seq.d/ 1094 0.0
SFJ873 (SFJ873Q) /CSM/SF/SFJ8-D/SFJ873Q.Seq.d/ 1088 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DV158696|DV158696.1 KG9B.004F12F.050721T7 KG9B Nicotiana tabacum cDNA clone KG9B.004F12, mRNA sequence. 48 0.027 2
CD472558|CD472558.2 nad01-1ms8-f10 Nad01 Nuphar advena cDNA clone nad01-1ms8-f10 5', mRNA sequence. 36 0.27 2
CK746714|CK746714.1 nad03-2cs4-a05 Nad03 Nuphar advena cDNA clone nad03-2cs4-a05 5', mRNA sequence. 36 0.27 2
CV003360|CV003360.1 nad03-2cs3-b09 Nad03 Nuphar advena cDNA clone nad03-2cs3-b09 5', mRNA sequence. 36 0.27 2
BM401054|BM401054.1 5009-0-82-A06.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 46 0.29 2
CV499157|CV499157.1 63483.1 Mixed Leaf Solanum tuberosum cDNA clone 63483 5', mRNA sequence. 48 0.37 1
DT687265|DT687265.1 s13dFA11G09FM072_474170 Tall fescue, Festuca arundinacea Schreb, Floral meristem Festuca arundinacea cDNA, mRNA sequence. 48 0.37 1
DN152324|DN152324.1 5222_H03_O06 Switchgrass callus cDNA library Panicum virgatum cDNA clone 5222_H03_O06 5', mRNA sequence. 48 0.37 1
DN152191|DN152191.1 5236_F02_L04 Switchgrass callus cDNA library Panicum virgatum cDNA clone 5236_F02_L04 5', mRNA sequence. 48 0.37 1
CV190124|CV190124.1 vco01-2ms3-a02 Vco01 Vaccinium corymbosum cDNA clone vco01-2ms3-a02 5', mRNA sequence. 48 0.37 1
dna update 2005.11. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC117994_1(BC117994|pid:none) Mus musculus dehydrogenase E1 and ... 220 5e-56
AK050057_1(AK050057|pid:none) Mus musculus adult male liver tumo... 220 5e-56
(A2ATU0) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 220 5e-56
(Q5PRA2) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 219 1e-55
BC086742_1(BC086742|pid:none) Danio rerio dehydrogenase E1 and t... 219 1e-55
(Q4KLP0) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 217 6e-55
EF710647_17(EF710647|pid:none) Glyptapanteles flavicoxis clone B... 215 2e-54
BC002477_1(BC002477|pid:none) Homo sapiens dehydrogenase E1 and ... 214 4e-54
CR749726_1(CR749726|pid:none) Homo sapiens mRNA; cDNA DKFZp762M1... 214 4e-54
(Q5R7H0) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 213 1e-53
protein update 2009. 4.11
PSORT

psg: 0.62 gvh: 0.33 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CHQ364 is cyt

5' end seq. ID CHQ364F
5' end seq.
>CHQ364F.Seq
AAAATTAAGTGTAACAAGATTAATTGATGGATATAGAGCACATGGTCATTTAGCAGCAAA
TATTGATCCATTAGCAAGAATGGAAAGAATTAGAAGTCAATTATTAGATTTAGATCGTTA
TAATTTAGTTAAAGGTCAATCAATTCCATCAACTATTGATTTAATTAATCAAGATTTAAC
CAACCTTGATCAAGTTGTTAGTTTTCTTGAAAATGCATATTGTAATGATGTTACAGCACA
ATTTGATCATATTGAATCGATTGAAGAAAAAGCATGGCTCTATGANAAGTTTGNACNNNN
NNNNNN
Length of 5' end seq. 306
3' end seq. ID CHQ364Z
3' end seq.
>CHQ364Z.Seq
NNNNNNNNNNCGACGGTGCCGGTCCAGAGCATTCAAGTTGTCGTATTGAACGTTTCTTTC
AATTGAGTGATACCGAAGCTGTAAATGTCAAAGACGATACATTAATCAATCAAGAGACAA
ACTTTTACTTTATCAATCCTTCAACTCCTGCAAATTATTTCCATGCACTTCGTAGACAAA
TGATTAGAAACTATCGTAAACCATTGATTGTCGCTGGTCCAAAAGTATTATTACGTCATC
CAAATTGTTTCTCAACTTTAAATGAAATGGCACCAGGAACTCATTTCCAAACAGTTTTAT
CCGATCCTGATACCATCAATAACGCATCCACAATTAAACGTGTCATCTTTTGTAGTGGTA
AAGTATTCTATGACCTCCAAGAGGAAAGAAAAGCAAAGAATTTCAATGATGTAGCAATCA
TTCGTCTTGAACAAATCGCTCCATTCCCATATCAACGTATTCAAGAAGAAATCAATCGTT
ATTCAAACGCTACTAAATTCGCTTGGGTTCAAGAAGAACAACAAAATGGTGGTTGTTGGT
CATTCGTTGAACCACGTTTCAAACAACGTTATCCACAAACTTCTCAAATTAAATATATTG
GTAGACCACCTTTAGCTGCTTCTGCAATTGGTATCTCTTCAATTCATAAAAAAGAAGTTT
CTCAATTATTAATTGATGCTTTTAATTTCTAAAAAATAAAAAAATAAAAAAATAAAAAAA
TAAAAATAAAAATAAATTA
Length of 3' end seq. 739
Connected seq. ID CHQ364P
Connected seq.
>CHQ364P.Seq
AAAATTAAGTGTAACAAGATTAATTGATGGATATAGAGCACATGGTCATTTAGCAGCAAA
TATTGATCCATTAGCAAGAATGGAAAGAATTAGAAGTCAATTATTAGATTTAGATCGTTA
TAATTTAGTTAAAGGTCAATCAATTCCATCAACTATTGATTTAATTAATCAAGATTTAAC
CAACCTTGATCAAGTTGTTAGTTTTCTTGAAAATGCATATTGTAATGATGTTACAGCACA
ATTTGATCATATTGAATCGATTGAAGAAAAAGCATGGCTCTATGANAAGTTTGNAC----
------CGACGGTGCCGGTCCAGAGCATTCAAGTTGTCGTATTGAACGTTTCTTTCAATT
GAGTGATACCGAAGCTGTAAATGTCAAAGACGATACATTAATCAATCAAGAGACAAACTT
TTACTTTATCAATCCTTCAACTCCTGCAAATTATTTCCATGCACTTCGTAGACAAATGAT
TAGAAACTATCGTAAACCATTGATTGTCGCTGGTCCAAAAGTATTATTACGTCATCCAAA
TTGTTTCTCAACTTTAAATGAAATGGCACCAGGAACTCATTTCCAAACAGTTTTATCCGA
TCCTGATACCATCAATAACGCATCCACAATTAAACGTGTCATCTTTTGTAGTGGTAAAGT
ATTCTATGACCTCCAAGAGGAAAGAAAAGCAAAGAATTTCAATGATGTAGCAATCATTCG
TCTTGAACAAATCGCTCCATTCCCATATCAACGTATTCAAGAAGAAATCAATCGTTATTC
AAACGCTACTAAATTCGCTTGGGTTCAAGAAGAACAACAAAATGGTGGTTGTTGGTCATT
CGTTGAACCACGTTTCAAACAACGTTATCCACAAACTTCTCAAATTAAATATATTGGTAG
ACCACCTTTAGCTGCTTCTGCAATTGGTATCTCTTCAATTCATAAAAAAGAAGTTTCTCA
ATTATTAATTGATGCTTTTAATTTCTAAAAAATAAAAAAATAAAAAAATAAAAAAATAAA
AATAAAAATAAATTA
Length of connected seq. 1025
Full length Seq ID -
Full length Seq. -
Length of full length seq. -