CHQ337
Library CH
(Link to library)
Clone ID CHQ337
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/
XXXXXXXXXXCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATG
ACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAAC
AAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCTTGATTTAAATGATGCTA
ATGATAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATAACAATAACA
ACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATG
AAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATA
ATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTA
ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTGA
ACAACTTAAAGCTTATCAAAGAATTNCAAAGAC
sequence update 2002. 9.10
Translated Amino Acid sequence
---EDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFLDLNDAN
DNFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHN
SNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIEN
GEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQ
QQQQGQQQVQATNVEQQIVNNLKLIKEXQR


Translated Amino Acid sequence (All Frames)
Frame A:
---EDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFLDLNDAN
DNFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHN
SNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIEN
GEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQ
QQQQGQQQVQATNVEQQIVNNLKLIKEXQR


Frame B:
---rifnin*ii*inhskmtiimiklkn*kmmiiilminkltmvnlkimlknfli*mmlm
iilnklttttttsiiitittlklinqrkvlnklkll*rmkdfifkklkmlqrdymkkfii
pi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkm
vkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkin
nnnkdnnkfkqqmlnnks*tt*slsknxkd


Frame C:
---gysisiksfkstipr*ls**sn*rikr**l*f**stn*qwsi*k*c*ris*fk*c**
*f*ts*qqqqqhq***q*ql*s**ikekcsts*ncfre*ktlssrs*rcsreti*rns*f
qfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw
*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*kst
tttrtttsssnkc*ttnreqlkayqrixk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/ 944 0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/ 944 0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/ 944 0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ 944 0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/ 944 0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/ 944 0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/ 944 0.0
CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/ 944 0.0
CHO755 (CHO755Q) /CSM/CH/CHO7-C/CHO755Q.Seq.d/ 944 0.0
CHO654 (CHO654Q) /CSM/CH/CHO6-C/CHO654Q.Seq.d/ 944 0.0

own update 2002.10. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 944 0.0 5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 4e-25 1
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 0.009 10
AL590427|AL590427.15 Human DNA sequence from clone RP11-396N10 on chromosome 1. 42 0.068 4
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 38 0.093 15
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 34 0.12 9
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.29 1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence. 48 0.29 1
BQ699661|BQ699661.1 NXRV125_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B09 5', mRNA sequence. 48 0.29 1
BP290409|BP290409.1 Homo sapiens cDNA clone: LNF05006, Sugano cDNA library, expressed in lung normal fibroblast. 48 0.29 1
dna update 2005.11. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 381 e-104
(Q23MT7) RecName: Full=Probable beta-tubulin polyglutamylase; ... 46 0.002
AL844504_88(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 45 0.002
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso... 44 0.005
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 44 0.005
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik... 44 0.008
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 44 0.008
AL034558_21(AL034558|pid:none) Plasmodium falciparum MAL3P2, com... 43 0.010
AL844506_105(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 43 0.013
CR855913_1(CR855913|pid:none) Paramecium tetraurelia macronuclea... 42 0.030
protein update 2009. 5.20
PSORT

psg: 0.75 gvh: 0.14 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.11 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for CHQ337 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHQ337Z
3' end seq.
>CHQ337Z.Seq
NNNNNNNNNNCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATG
ACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAAC
AAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCTTGATTTAAATGATGCTA
ATGATAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATAACAATAACA
ACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATG
AAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATA
ATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTA
ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTGA
ACAACTTAAAGCTTATCAAAGAATTNCAAAGAC
Length of 3' end seq. 813
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -