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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ307
Library CH
(Link to library)
Clone ID CHQ307
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16403-1
Original site URL
Representative seq. ID CHQ307P
(Link to Original site)
Representative DNA sequence 
>CHQ307 (CHQ307Q) /CSM/CH/CHQ3-A/CHQ307Q.Seq.d/
AATAAAACAAATTAAAAAAAAATGGAAGAAAAAAGAAGTACCAATTCTCCTGGCTTTGAT
AAACCAAAATTAAATAGATCAGGATCAATTACATCTGCAACCAGTCACCCACCAAGATCA
AATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTATGAAGAATCAAAAAAT
AAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAACAAAAACAAACATCA
AATCAATCAGAAGATCCTGCTACTCAATTATCTTCATTGAAATTTGAAAGTGATAAAGAA
AAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAGCTATCTTCCAGAGGATAAGGGTTCA
CTTCAAAAAGAATTTGTTAAACATGTTGAATATACTTTGGCTCAAACCAAGAGTGAATGT
ACTGATTTCTCXXXXXXXXXXTTCGTGATGCCATTGGTCATGAAAATATGTACATCTTTG
GTGCTCGTTCTGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACAC
CAGACACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAANATACTTTTGGTCCACATG
AACAATTCCAAGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTT
ATGATTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAG
CTAAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATA
GAACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTC
CAGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCAC
CAAATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAA
CTTCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAAC
CAAAACAAACTACAAAAGGTTTTAATATTGGGGTCAACCAGGTAATCCAACAAATTAATT
AAATAATAATAATAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
nktn*KKMEEKRSTNSPGFDKPKLNRSGSITSATSHPPRSNSNPKLVAKHQQQLYEESKN
KRNQEQQNQQPQQQQQKQTSNQSEDPATQLSSLKFESDKEKEQALLWAFLASYLPEDKGS
LQKEFVKHVEYTLAQTKSECTDF---

---RDAIGHENMYIFGARSEEVNKVKKIIHDGKFTPDTRWARVLTAIKEXTFGPHEQFQD
IINSVSGGNDHYILSYDFGSYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKE
YAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASP
LSVISGGDKTNNTLKPKQTTKGFNIGVNQVIQQIN*iiiikk
Translated Amino Acid sequence (All Frames) 
Frame A:
nktn*KKMEEKRSTNSPGFDKPKLNRSGSITSATSHPPRSNSNPKLVAKHQQQLYEESKN
KRNQEQQNQQPQQQQQKQTSNQSEDPATQLSSLKFESDKEKEQALLWAFLASYLPEDKGS
LQKEFVKHVEYTLAQTKSECTDF---

---fvmplvmkictslvlvlkrstk*rklfmmenshqtldglvf*pllkxillvhmnnsk
ilstllvvamiitflvmilvltwifkiqlikiskielnglknqlwlqfvvvnsvqieplk
smlnkfgvlkngrdqvqfqfqmkklvly*fhhhlvhqmismlsqlkdyhl*lllnkllll
hyllslvvikpttl*nqnklqkvlilgstr*snklik****k

Frame B:
ikqikkkwkkkevpillalinqn*idqdqlhlqpvthqdqiptqswlqninsnfmknqki
keiknnkinnlnnnnknkhqinqkilllnylh*nlkvikkknklyfglswqaifqrirvh
fkknllnmlnilwlkprvnvlis---

---s*chws*kyvhlwcsf*rgqqskenys*wkihtrh*mgscfnry*rxyfwst*tipr
yyqlc*wwq*slhs*l*fwfllgyskfn*srfqr*s*mg*kinygfsllw*iqfr*nh*r
vcstnlgy*rmeetrssssfk*rssffissttiwftk*yqcyln*kiitfnfc*tnfcfs
iicylww**nqqhfktktnykrf*ywgqpgnptn*lnnnnkk

Frame C:
*nklkkngrkkkyqfswl**tkik*irinyicnqsptkikfqpkvgcktstatl*rikk*
kksrttksttsttttktniksirrscysiifiei*k**rkrtsftlgflgklssrg*gft
skric*tc*iyfgsnqe*my*fl---

---RDAIGHENMYIFGARSEEVNKVKKIIHDGKFTPDTRWARVLTAIKEXTFGPHEQFQD
IINSVSGGNDHYILSYDFGSYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKE
YAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASP
LSVISGGDKTNNTLKPKQTTKGFNIGVNQVIQQIN*iiiikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ307 (CHQ307Q) /CSM/CH/CHQ3-A/CHQ307Q.Seq.d/                       1631   0.0
SHL702 (SHL702Q) /CSM/SH/SHL7-A/SHL702Q.Seq.d/                       1287   0.0
AHF204 (AHF204Q) /CSM/AH/AHF2-A/AHF204Q.Seq.d/                       1287   0.0
AHE134 (AHE134Q) /CSM/AH/AHE1-B/AHE134Q.Seq.d/                       1287   0.0
AHC226 (AHC226Q) /CSM/AH/AHC2-B/AHC226Q.Seq.d/                       1287   0.0
SHK175 (SHK175Q) /CSM/SH/SHK1-D/SHK175Q.Seq.d/                       1279   0.0
SHH157 (SHH157Q) /CSM/SH/SHH1-C/SHH157Q.Seq.d/                       1279   0.0
SHA771 (SHA771Q) /CSM/SH/SHA7-C/SHA771Q.Seq.d/                       1279   0.0
CHS249 (CHS249Q) /CSM/CH/CHS2-C/CHS249Q.Seq.d/                       1279   0.0
CHL678 (CHL678Q) /CSM/CH/CHL6-D/CHL678Q.Seq.d/                       1279   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.  1203   0.0    2
BX569794|BX569794.8 Zebrafish DNA sequence from clone DKEYP-15B2 in linkage group 6.    36   0.054  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   0.058  13
AC103376|AC103376.7 Mus musculus chromosome 8, clone RP24-226P5, complete sequence.    42   0.081  5
BE470067|BE470067.1 IpHdk03092 Head kidney cDNA library Ictalurus punctatus cDNA 5' similar to Dual specificity phosphatase 10 (DUSP10), mRNA sequence.    50   0.099  1
AJ226749|AJ226749.1 Ciona intestinalis genomic fragment, clone 19H7.    50   0.099  1
AC149134|AC149134.2 Medicago truncatula, complete sequence.        40   0.13   4
CR450753|CR450753.6 Zebrafish DNA sequence from clone DKEY-225F3 in linkage group 22.    36   0.15   8
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    42   0.18   8
CR352331|CR352331.8 Zebrafish DNA sequence from clone DKEY-171H2 in linkage group 17.    36   0.21   6
dna update 2005.11. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos...   115   3e-24
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...   114   6e-24
(Q9SD76) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   111   5e-23
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c...   110   1e-22
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos...   110   1e-22
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou...   110   1e-22
(P32811) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   109   2e-22
DQ279079_1(DQ279079|pid:none) Chlamydomonas reinhardtii PhoA (PH...   109   2e-22
EU857639_1(EU857639|pid:none) Zea mays starch phosphorylase 2 pr...   108   3e-22
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   108   4e-22
protein update 2009. 4.11
PSORT 

 psg: 0.68  gvh: 0.48  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHQ307 is cyt
5' end seq. ID CHQ307F
5' end seq. 
>CHQ307F.Seq
AATAAAACAAATTAAAAAAAAATGGAAGAAAAAAGAAGTACCAATTCTCCTGGCTTTGAT
AAACCAAAATTAAATAGATCAGGATCAATTACATCTGCAACCAGTCACCCACCAAGATCA
AATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTATGAAGAATCAAAAAAT
AAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAACAAAAACAAACATCA
AATCAATCAGAAGATCCTGCTACTCAATTATCTTCATTGAAATTTGAAAGTGATAAAGAA
AAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAGCTATCTTCCAGAGGATAAGGGTTCA
CTTCAAAAAGAATTTGTTAAACATGTTGAATATACTTTGGCTCAAACCAAGAGTGAATGT
ACTGATTTCTCNNNNNNNNNN
Length of 5' end seq. 441
3' end seq. ID CHQ307Z
3' end seq. 
>CHQ307Z.Seq
NNNNNNNNNNTTCGTGATGCCATTGGTCATGAAAATATGTACATCTTTGGTGCTCGTTCT
GAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAGA
TGGGCTCGTGTTTTAACCGCTATTAAAGAANATACTTTTGGTCCACATGAACAATTCCAA
GATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGGT
TCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCT
AAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAA
GAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTT
TCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATC
AATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCT
CCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACT
ACAAAAGGTTTTAATATTGGGGTCAACCAGGTAATCCAACAAATTAATTAAATAATAATA
ATAAAAAAA
Length of 3' end seq. 669
Connected seq. ID CHQ307P
Connected seq. 
>CHQ307P.Seq
AATAAAACAAATTAAAAAAAAATGGAAGAAAAAAGAAGTACCAATTCTCCTGGCTTTGAT
AAACCAAAATTAAATAGATCAGGATCAATTACATCTGCAACCAGTCACCCACCAAGATCA
AATTCCAACCCAAAGTTGGTTGCAAAACATCAACAGCAACTTTATGAAGAATCAAAAAAT
AAAAGAAATCAAGAACAACAAAATCAACAACCTCAACAACAACAACAAAAACAAACATCA
AATCAATCAGAAGATCCTGCTACTCAATTATCTTCATTGAAATTTGAAAGTGATAAAGAA
AAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAGCTATCTTCCAGAGGATAAGGGTTCA
CTTCAAAAAGAATTTGTTAAACATGTTGAATATACTTTGGCTCAAACCAAGAGTGAATGT
ACTGATTTCTC----------TTCGTGATGCCATTGGTCATGAAAATATGTACATCTTTG
GTGCTCGTTCTGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACAC
CAGACACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAANATACTTTTGGTCCACATG
AACAATTCCAAGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTT
ATGATTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAG
CTAAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATA
GAACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTC
CAGTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCAC
CAAATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAA
CTTCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAAC
CAAAACAAACTACAAAAGGTTTTAATATTGGGGTCAACCAGGTAATCCAACAAATTAATT
AAATAATAATAATAAAAAAA
Length of connected seq. 1090
Full length Seq ID -
Full length Seq. -
Length of full length seq. -