CHQ251
Library CH
(Link to library)
Clone ID CHQ251
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10823-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHQ251 (CHQ251Q) /CSM/CH/CHQ2-C/CHQ251Q.Seq.d/
GTNTTCATTAATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGC
ATCATTATGTAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTA
TGAGGCAACACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAA
TTTTCAATTAACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAA
TCAAAGATGGGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAAC
TGATTATATAATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAAC
TGGTGAAGTTTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTA
TTCAAATTATTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATXXXXXXXX
XX
sequence update 2002.10.25
Translated Amino Acid sequence
XSLIIFFVIVLFCVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAGPYGNDIEQLN
FQLTFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDSTDYIIEFTNNPFGFAATRIST
GEVLFNTTQPSDCSFNGLIYSNYYLELSTSFTESNP---


Translated Amino Acid sequence (All Frames)
Frame A:
vfinyffcyciilccwiiisiim*isrlfnsrcyknk*wl*gnt*pyfsrsiw*ryrtik
fsinf*n*snf*s*ny*pk*skmgsptnc*siswrksrfn*lyn*iyk*siwfcsnsyfn
w*sfi*ynstk*lfi*wfnlfkllfrikyiihre*sk---


Frame B:
XSLIIFFVIVLFCVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAGPYGNDIEQLN
FQLTFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDSTDYIIEFTNNPFGFAATRIST
GEVLFNTTQPSDCSFNGLIYSNYYLELSTSFTESNP---


Frame C:
xh*lfflllyyfvlldhyqhhyvniqviqlkvlqkqimvmrqhltlfqqvhmvti*nn*i
fn*llklvkflelelltqiikdgkshqllin*lekiqiqlii*lnlqiihlvlqqlvfql
vkfyliqlnqvivhlmv*fiqiii*n*vhhsqrviq---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR858 (CHR858Q) /CSM/CH/CHR8-C/CHR858Q.Seq.d/ 892 0.0
CHQ251 (CHQ251Q) /CSM/CH/CHQ2-C/CHQ251Q.Seq.d/ 892 0.0
CHI313 (CHI313Q) /CSM/CH/CHI3-A/CHI313Q.Seq.d/ 892 0.0
CHH383 (CHH383Q) /CSM/CH/CHH3-D/CHH383Q.Seq.d/ 892 0.0
VHJ526 (VHJ526Q) /CSM/VH/VHJ5-B/VHJ526Q.Seq.d/ 880 0.0
SHK458 (SHK458Q) /CSM/SH/SHK4-C/SHK458Q.Seq.d/ 880 0.0
SHK278 (SHK278Q) /CSM/SH/SHK2-D/SHK278Q.Seq.d/ 874 0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/ 874 0.0
AHN661 (AHN661Q) /CSM/AH/AHN6-C/AHN661Q.Seq.d/ 874 0.0
CHL607 (CHL607Q) /CSM/CH/CHL6-A/CHL607Q.Seq.d/ 870 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 0.006 7
BE323805|BE323805.2 NF010E10PL1F1071 Phosphate starved leaf Medicago truncatula cDNA clone NF010E10PL 5', mRNA sequence. 50 0.042 1
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence. 40 0.19 7
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence. 36 0.22 4
AA550593|AA550593.1 1758m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1758m, DNA sequence. 40 0.24 2
AL449924|AL449924.1 Streptococcus pneumoniae serotype 19F *** SEQUENCING IN PROGRESS *** from clone G54. 36 0.36 3
CR931810|CR931810.3 Medicago truncatula chromosome 5 clone mte1-27n5, WORKING DRAFT SEQUENCE, 1 ordered pieces. 40 0.44 6
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 36 0.57 7
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 38 0.64 6
AY653733|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome. 46 0.66 1
dna update 2005.11. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC115034_1(BC115034|pid:none) Homo sapiens sucrase-isomaltase (a... 83 3e-15
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a... 83 3e-15
(P14410) RecName: Full=Sucrase-isomaltase, intestinal; Contains:... 83 3e-15
M22616_1(M22616|pid:none) Human sucrase-isomaltase mRNA, partial... 83 3e-15
A36690(A36690) sucrose alpha-glucosidase (EC 3.2.1.48) - rat (fr... 79 5e-14
BX294013_13(BX294013|pid:none) Neurospora crassa DNA linkage gro... 78 9e-14
L25926_1(L25926|pid:none) Rat sucrase-isomaltase (SI) mRNA, comp... 77 1e-13
(P23739) RecName: Full=Sucrase-isomaltase, intestinal; Contains:... 77 1e-13
AM467592_1(AM467592|pid:none) Vitis vinifera contig VV78X160209.... 77 2e-13
AY229886_1(AY229886|pid:none) Mus musculus soluble maltase-gluco... 77 2e-13
protein update 2009. 4.11
PSORT

psg: 1.02 gvh: 0.74 alm: 0.52 top: 0.60 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
20.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vacuolar
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: nuclear
4.0 %: endoplasmic reticulum

>> prediction for CHQ251 is exc

5' end seq. ID CHQ251F
5' end seq.
>CHQ251F.Seq
GTNTTCATTAATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGC
ATCATTATGTAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTA
TGAGGCAACACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAA
TTTTCAATTAACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAA
TCAAAGATGGGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAAC
TGATTATATAATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAAC
TGGTGAAGTTTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTA
TTCAAATTATTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATNNNNNNNN
NN
Length of 5' end seq. 482
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -