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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ244
Library CH
(Link to library)
Clone ID CHQ244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID CHQ244P
(Link to Original site)
Representative DNA sequence 
>CHQ244 (CHQ244Q) /CSM/CH/CHQ2-B/CHQ244Q.Seq.d/
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAAXXXXXXXXXXCCAATTTAATGGTAATTCAAATGATTTATCATTTTTAGGTGG
TGGTGGTGGTGGTGGTNAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGA
TAGATCACAAGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTT
AGAATTAAATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTA
TCAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGT
AGGCCAAAGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATT
GAATCCAGTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAA
GATGAATTTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTA
TTTATCCATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACG
TTTACCACATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTNTA
AATCGTTAGAAAGGANAGCTCCNAATCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
inthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---QFNGNSNDLSFLGGGGGGGXVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELN
LLNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPV
IDMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPH
VDVDSILRRLNSKNIX*ivrkxssxs
Translated Amino Acid sequence (All Frames) 
Frame A:
kltrtyh*niniihqelifiyl*yffkritihy*svvlv*kk---

---pi*w*fk*fiifrwwwwwwxsssts**scciww**itsnsn*wsiykipr*n*frik
sfeykstryvkiqdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiess
h*ygndgitksreill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstftt
crc*lypssfk**eylxnr*kgxlxi

Frame B:
n*hahiikili*siknlylfiyniflrglqytikvly*ykkk---

---QFNGNSNDLSFLGGGGGGGXVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELN
LLNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPV
IDMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPH
VDVDSILRRLNSKNIX*ivrkxssxs

Frame C:
inthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---nlmviqmiyhf*vvvvvvvkfkhqlikllylvvidhkqfklvehlqdskveli*n*i
f*iqvnkvcqnsrfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqs
liwq*wyyqvkrdstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm
*mltlsfvv*ivrisxkslerxapnq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ244 (CHQ244Q) /CSM/CH/CHQ2-B/CHQ244Q.Seq.d/                       1076   0.0
VHM229 (VHM229Q) /CSM/VH/VHM2-B/VHM229Q.Seq.d/                       1053   0.0
VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/                       1053   0.0
SHF674 (SHF674Q) /CSM/SH/SHF6-D/SHF674Q.Seq.d/                       1053   0.0
SHD615 (SHD615Q) /CSM/SH/SHD6-A/SHD615Q.Seq.d/                       1053   0.0
SHD449 (SHD449Q) /CSM/SH/SHD4-C/SHD449Q.Seq.d/                       1053   0.0
SHA785 (SHA785Q) /CSM/SH/SHA7-D/SHA785Q.Seq.d/                       1053   0.0
SHA570 (SHA570Q) /CSM/SH/SHA5-C/SHA570Q.Seq.d/                       1053   0.0
SHA168 (SHA168Q) /CSM/SH/SHA1-C/SHA168Q.Seq.d/                       1053   0.0
CHS405 (CHS405Q) /CSM/CH/CHS4-A/CHS405Q.Seq.d/                       1053   0.0
own update 2004. 8.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC166018|AC166018.2 Oryctolagus cuniculus clone LB1-246C1, WORKING DRAFT SEQUENCE, 3 ordered pieces.    50   0.020  4
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   0.14   5
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    38   0.15   2
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    34   0.15   2
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38   0.15   2
AL844152|AL844152.9 Zebrafish DNA sequence from clone DKEY-37L7.    34   0.15   2
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   0.15   2
BX901875|BX901875.9 Zebrafish DNA sequence from clone DKEY-183J10 in linkage group 18.    48   0.26   1
AL138729|AL138729.11 Human DNA sequence from clone RP1-172I22 on chromosome 6.    48   0.26   1
AC138054|AC138054.2 Felis catus clone RP86-462H21, WORKING DRAFT SEQUENCE, 3 ordered pieces.    38   0.38   4
dna update 2005.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=...   367   e-100
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   104   3e-21
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...   104   3e-21
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...   104   3e-21
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...   104   3e-21
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   104   3e-21
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,...   104   3e-21
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet...   104   3e-21
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...   103   4e-21
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...   102   2e-20
protein update 2009. 4.11
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHQ244 is cyt
5' end seq. ID CHQ244F
5' end seq. 
>CHQ244F.Seq
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAANNNNNNNNNN
Length of 5' end seq. 138
3' end seq. ID CHQ244Z
3' end seq. 
>CHQ244Z.Seq
NNNNNNNNNNCCAATTTAATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGTG
GTGGTGGTNAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCAC
AAGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAA
ATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATA
GTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAA
GCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAG
TCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATT
TCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCA
TGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCAC
ATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTNTAAATCGTTA
GAAAGGANAGCTCCNAATCAA
Length of 3' end seq. 621
Connected seq. ID CHQ244P
Connected seq. 
>CHQ244P.Seq
AAATTAACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATT
TATTTATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAA
AAAAAAAA----------CCAATTTAATGGTAATTCAAATGATTTATCATTTTTAGGTGG
TGGTGGTGGTGGTGGTNAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGA
TAGATCACAAGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTT
AGAATTAAATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTA
TCAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGT
AGGCCAAAGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATT
GAATCCAGTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAA
GATGAATTTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTA
TTTATCCATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACG
TTTACCACATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTNTA
AATCGTTAGAAAGGANAGCTCCNAATCAA
Length of connected seq. 739
Full length Seq ID -
Full length Seq. -
Length of full length seq. -