>CHQ239 (CHQ239Q) /CSM/CH/CHQ2-B/CHQ239Q.Seq.d/
GCACTCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACT
TCAAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGT
TCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAA
AGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGT
AGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTA
GATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCAT
TCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGXXXXXXXXXXGCA
CCAACTTATGCTGATATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAATTCA
TTGGCAGATGGTATTNTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGT
GATAAAGGTTTCTCGATTNCAACATTTANAACTCTACATATGGAATTAAGTAAGAGTGGT
CAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCT
TTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACN
TCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCT
GATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTA
TCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAA
GATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGT
TGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTT
GGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTT
GGTGGTGTTGTATTTGCAGCTGCAATGGTCGGCTACTGTTGTATGGTAAAGCGAAAGAAA
AACAAAAACAAAA

ALGANNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGE
SVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASH
SKGGNGKALTYDWSV---

---APTYADMVYNVSSDILVVSNSLADGIXQRTAIGEEPFTVASDKGFSIXTFXTLHMEL
SKSGQSIGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHF
NHKSDQTIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEW
LTDGCSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGYCCMV
KRKKNKNK

Frame A:
ALGANNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGE
SVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASH
SKGGNGKALTYDWSV---

---APTYADMVYNVSSDILVVSNSLADGIXQRTAIGEEPFTVASDKGFSIXTFXTLHMEL
SKSGQSIGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHF
NHKSDQTIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEW
LTDGCSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGYCCMV
KRKKNKNK

Frame B:
hsvqtmvislvvisllqlilqiglhvvlfsllqlyklwvvlqdvnillqtf*wlhwvvvk
vyqlannwnflkveslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhwy*mlvi
qkvvmekh*pmigrl---

---hqlmliwfimflqtf*wypihwqmvxfkelqlvknhlqlqvikvsrxqhlxlyiwn*
vrvvnrlvskrmmkvnllmvknllslqnsvfhqvfyqrin*nkxlkslvn*lqfhqifis
iinlikpfsqklfhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng
*qmvvqpik*mvifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqwsatvvw*
serktktk

Frame C:
trckqw*fl*l*ylfss*yfk*afm*fsflfcnftnfg*fskm*iycfkhsngyig*w*k
ciswptigifsrwnhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*sigirc*sf
krw*wksinl*lvg*---

---tnlc*ygl*cffrhfsgiqfigrwyxskncnw*rtiysck**rfldxnixnstygik
*ewsidwfqkg**rsis*w*ktcfhskiqysikcfike*iktnx*nhw*tnyssikysfq
s*i*snhfpkncft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmv
nrwlfnp*srw*ysm*m*psyrvwfn*ickilskhldhywtsswwccicscngrlllygk
akekqkq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ239 (CHQ239Q) /CSM/CH/CHQ2-B/CHQ239Q.Seq.d/                       2171   0.0
CHR330 (CHR330Q) /CSM/CH/CHR3-B/CHR330Q.Seq.d/                       1364   0.0
CHI765 (CHI765Q) /CSM/CH/CHI7-C/CHI765Q.Seq.d/                       1364   0.0
CFA721 (CFA721Q) /CSM/CF/CFA7-A/CFA721Q.Seq.d/                       1356   0.0
CHI163 (CHI163Q) /CSM/CH/CHI1-C/CHI163Q.Seq.d/                       1350   0.0
CHS340 (CHS340Q) /CSM/CH/CHS3-B/CHS340Q.Seq.d/                       1340   0.0
CHI747 (CHI747Q) /CSM/CH/CHI7-B/CHI747Q.Seq.d/                       1340   0.0
SHC445 (SHC445Q) /CSM/SH/SHC4-B/SHC445Q.Seq.d/                       1338   0.0
CHF612 (CHF612Q) /CSM/CH/CHF6-A/CHF612Q.Seq.d/                       1338   0.0
CHR576 (CHR576Q) /CSM/CH/CHR5-D/CHR576Q.Seq.d/                       1336   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFTSEQUENCE, 51 unordered pieces.    48   0.41   1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.41   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.41   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.41   1
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.68   2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.69   2
BI347313|BI347313.1 fbn-ek036 Cattle pUC18 mammary gland library Bos taurus cDNA, mRNA sequence.    46   1.6    1
CZ857443|CZ857443.1 OC__Ba0249B12.r OC__Ba Oryza coarctata genomic clone OC__Ba0249B12 3', genomic survey sequence.    46   1.6    1
AC114561|AC114561.7 Mus musculus chromosome 6, clone RP23-54F12, complete sequence.    46   1.6    1
AC092422|AC092422.3 Homo sapiens chromosome 3 clone RP11-537O8, complete sequence.    46   1.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    54   8e-06
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   5e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.003
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.003
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.006

 psg: 0.72  gvh: 0.59  alm: 0.22  top: 0.90  tms: 0.07  mit: 0.15  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHQ239 is cyt

>CHQ239F.Seq
GCACTCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACT
TCAAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGT
TCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAA
AGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGT
AGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTA
GATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCAT
TCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGNNNNNNNNNN

>CHQ239Z.Seq
NNNNNNNNNNGCACCAACTTATGCTGATATGGTTTATAATGTTTCTTCAGACATTTTAGT
GGTATCCAATTCATTGGCAGATGGTATTNTTCAAAGAACTGCAATTGGTGAAGAACCATT
TACAGTTGCAAGTGATAAAGGTTTCTCGATTNCAACATTTANAACTCTACATATGGAATT
AAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGG
TGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAA
ATTAAAACAAACNTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTT
CAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGG
TGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACA
TTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATG
GTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCA
TCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTAT
TGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTCGGCTACTGTTGTATGGT
AAAGCGAAAGAAAAACAAAAACAAAA

>CHQ239P.Seq
GCACTCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACT
TCAAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGT
TCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAA
AGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGT
AGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTA
GATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCAT
TCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAG----------GCA
CCAACTTATGCTGATATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAATTCA
TTGGCAGATGGTATTNTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGT
GATAAAGGTTTCTCGATTNCAACATTTANAACTCTACATATGGAATTAAGTAAGAGTGGT
CAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCT
TTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACN
TCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCT
GATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTA
TCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAA
GATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGT
TGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTT
GGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTT
GGTGGTGTTGTATTTGCAGCTGCAATGGTCGGCTACTGTTGTATGGTAAAGCGAAAGAAA
AACAAAAACAAAA