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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ238
Library CH
(Link to library)
Clone ID CHQ238
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID CHQ238P
(Link to Original site)
Representative DNA sequence 
>CHQ238 (CHQ238Q) /CSM/CH/CHQ2-B/CHQ238Q.Seq.d/
GTCAATAAATAAAAAAAAAAAAAAAAAATTAAAAAAAATTTTANTAGGTTTTAAAAGGGN
NTAGTTTTAATAAAAAAAAAAAAAAANCCCCTTTTTTTTTTTTTTAAAAAAAAANTAAAA
ATTAAAAAAAAAAXXXXXXXXXXAGAAAANAAAAAAGTTTTAAAAAAAAATNAAAAATNA
TNAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTG
CTTCTGTTAAGNATAATGATAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTC
AAGCTCA
sequence update 2002.10.25
Translated Amino Acid sequence 
vnk*kkkkkikknfxrf*KGXVLIKKKKXPLFFFFKKKXKIKKK---

---RKXKSFKKKXKXXKNKKKIKKKTFKTLLLLFGASVKXNDKVSLSPFALHYSPQA
Translated Amino Acid sequence (All Frames) 
Frame A:
vnk*kkkkkikknfxrf*KGXVLIKKKKXPLFFFFKKKXKIKKK---

---RKXKSFKKKXKXXKNKKKIKKKTFKTLLLLFGASVKXNDKVSLSPFALHYSPQA

Frame B:
sinkkkkkklkkilxgfkrx*f**kkkkxpfffflkkx*klkkk---

---exkkvlkknxkxxkikkk*kkkllklsfyflvlllximirclsppllcitllkl

Frame C:
q*ikkkkkn*kkfx*vlkgxsfnkkkkkxpffff*kkxkn*kk---

---kxkkf*kkxknxxk*kknkkknf*nspstfwcfc*x***gvslplcfallssss
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ238 (CHQ238Q) /CSM/CH/CHQ2-B/CHQ238Q.Seq.d/                        186   1e-46
VSC737 (VSC737Q) /CSM/VS/VSC7-B/VSC737Q.Seq.d/                        163   2e-39
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        163   2e-39
SSM803 (SSM803Q) /CSM/SS/SSM8-A/SSM803Q.Seq.d/                        163   2e-39
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        163   2e-39
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        163   2e-39
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        163   2e-39
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        163   2e-39
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        163   2e-39
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        163   2e-39
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    100   8e-36  2
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50   0.026  1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42   6.4    1
dna update 2005.11. 2
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 142,792,022
protein update 2009. 4.11
PSORT 

 psg: 0.84  gvh: 0.41  alm: 0.47  top: 0.80  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.87  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for CHQ238 is nuc
5' end seq. ID CHQ238F
5' end seq. 
>CHQ238F.Seq
GTCAATAAATAAAAAAAAAAAAAAAAAATTAAAAAAAATTTTANTAGGTTTTAAAAGGGN
NTAGTTTTAATAAAAAAAAAAAAAAANCCCCTTTTTTTTTTTTTTAAAAAAAAANTAAAA
ATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 143
3' end seq. ID CHQ238Z
3' end seq. 
>CHQ238Z.Seq
NNNNNNNNNNAGAAAANAAAAAAGTTTTAAAAAAAAATNAAAAATNATNAAAAATAAAAA
AAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGNA
TAATGATAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCA
Length of 3' end seq. 174
Connected seq. ID CHQ238P
Connected seq. 
>CHQ238P.Seq
GTCAATAAATAAAAAAAAAAAAAAAAAATTAAAAAAAATTTTANTAGGTTTTAAAAGGGN
NTAGTTTTAATAAAAAAAAAAAAAAANCCCCTTTTTTTTTTTTTTAAAAAAAAANTAAAA
ATTAAAAAAAAAA----------AGAAAANAAAAAAGTTTTAAAAAAAAATNAAAAATNA
TNAAAAATAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTG
CTTCTGTTAAGNATAATGATAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTC
AAGCTCA
Length of connected seq. 297
Full length Seq ID -
Full length Seq. -
Length of full length seq. -