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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ236
Library CH
(Link to library)
Clone ID CHQ236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10713-1
Original site URL
Representative seq. ID CHQ236P
(Link to Original site)
Representative DNA sequence 
>CHQ236 (CHQ236Q) /CSM/CH/CHQ2-B/CHQ236Q.Seq.d/
GTTTATAAATTTTTTTTTGTGTGTATTTATTTCTTTATTGAATTAAAAATAATACCACAC
AATGGCAAAAAAAGCAAATAAAGAACAATCACCAAAAAAAACTTCACCTACATCATCACA
AGGCTCGACTGCGACAAAGAAAAAAACGAAAACATCTGAACCAGCAGGAACTGATATTAG
AAATTTCTTTGCAGTAATTAAACCATCAACTAGTGGTGAAAATGTTAAAAATGATTTATT
TAGCAAAGCAAAAGAGGATAGTAATAAAGAATTTTCATTGTCAGACAAAGAAAATGATGA
TGTTAATATCATTAGCAACAAAAAAGATACAACTAACAATGATAAAAAGAAGCCATCAGA
AAATAAATCACCTAAAAAGAAAGAACCATCAAAATCTATTGATTTAACTTCTGATGAAGA
TAAAAGTTCAAGXXXXXXXXXXACTACTCATATTTCTTTACCAACTCCAACTCCAACTCC
AACTCCAACCCCAGCATCATCATCATCATCATCAACTACTACTACTACTACTACTACTAC
TACTACTACAAATTCCACAGGAATAAAGGGACCATCATTACCAGTGAGATCTGGTAGTGG
TGGAAGTTCAACAGGAATTAAAGGACCATCATTACCTGTGAGATCTGGTAGTGGTGGAAC
GACATCATCATCACCACCTTTAACTTTTACGTCATCACNTCCAACTTCAACAACCACCGC
AACAACAACAACAACATCATCACCACCAATTAGTATGGCTTCGGTAATTGTGCCAAAATC
AATTTCAACAATACCAAAAGGACATGATATTTTATGGGTAGAAAAATATAGACCAAAAGT
AATTGAAGATATAGTTGGTAATCCAGGTATTTTCCAAGAGTTTGGTAAATGGTTAGATCA
ATGGAACTCTACAGCACCAAGAGATGCAAGTAAAAAGAATGCAGTTTTATTATCAGGACC
ACCAGGTATTGGTAAAACTTCAGCAGCTTTATTAATTTGTAAGCAAAAAGGCTTTGAAGC
AATTGAATTGAATGCAAGTGATGCAAGAAGTAAATCAGAGATTAAAAGATTATTATCTGG
TGTATCAGATAATCAAAACATTACCAAATTCTTGGTACAACCAATCAAGACACGGTAAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
finfflcvfislln*k*YHTMAKKANKEQSPKKTSPTSSQGSTATKKKTKTSEPAGTDIR
NFFAVIKPSTSGENVKNDLFSKAKEDSNKEFSLSDKENDDVNIISNKKDTTNNDKKKPSE
NKSPKKKEPSKSIDLTSDEDKSS---

---TTHISLPTPTPTPTPTPASSSSSSTTTTTTTTTTTTNSTGIKGPSLPVRSGSGGSST
GIKGPSLPVRSGSGGTTSSSPPLTFTSSXPTSTTTATTTTTSSPPISMASVIVPKSISTI
PKGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIG
KTSAALLICKQKGFEAIELNASDARSKSEIKRLLSGVSDNQNITKFLVQPIKTR*
Translated Amino Acid sequence (All Frames) 
Frame A:
vykfffvciyffielkiiphngkksk*rtitkknftyiitrldcdkekneni*tsrn*y*
kflcsn*tin*w*kc*k*fi*qskrg***rifivrqrk**c*yh*qqkryn*q**keair
k*it*kertikiy*fnf**r*kfk---

---TTHISLPTPTPTPTPTPASSSSSSTTTTTTTTTTTTNSTGIKGPSLPVRSGSGGSST
GIKGPSLPVRSGSGGTTSSSPPLTFTSSXPTSTTTATTTTTSSPPISMASVIVPKSISTI
PKGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIG
KTSAALLICKQKGFEAIELNASDARSKSEIKRLLSGVSDNQNITKFLVQPIKTR*

Frame B:
finfflcvfislln*k*YHTMAKKANKEQSPKKTSPTSSQGSTATKKKTKTSEPAGTDIR
NFFAVIKPSTSGENVKNDLFSKAKEDSNKEFSLSDKENDDVNIISNKKDTTNNDKKKPSE
NKSPKKKEPSKSIDLTSDEDKSS---

---lliflyqlqlqlqlqpqhhhhhhqlllllllllllqipqe*rdhhyq*dlvvvevqq
elkdhhyl*dlvvverhhhhhl*llrhhxqlqqppqqqqqhhhhqlvwlr*lcqnqfqqy
qkdmifyg*knidqk*lki*lviqvfskslvng*ingtlqhqemqvkrmqfyyqdhqvlv
klqqly*fvskkalkqln*mqvmqevnqrlkdyylvyqiiktlpnswynqsrhgk

Frame C:
l*iffcvylfly*iknnttqwqkkqiknnhqkklhlhhhkarlrqrkkrkhlnqqelile
islq*lnhqlvvkmlkmiylakqkriviknfhcqtkkmmmlislatkkiqltmikrshqk
inhlkrknhqnlli*llmkikvq---

---ysyfftnsnsnsnsnpsiiiiiinyyyyyyyyyyykfhrnkgtiitseiw*wwkfnr
n*rtiitceiw*wwndiiittfnfyvitsnfnnhrnnnnniittn*ygfgncakinfnnt
krt*yfmgrki*tksn*rysw*sryfprvw*mvrsmelystkrck*kecsfiirttryw*
nfssfinl*akrl*sn*ieck*ckk*ird*kiiiwcir*skhyqilgttnqdtvk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ236 (CHQ236Q) /CSM/CH/CHQ2-B/CHQ236Q.Seq.d/                        801   0.0
AHN632 (AHN632Q) /CSM/AH/AHN6-B/AHN632Q.Seq.d/                        801   0.0
AHE519 (AHE519Q) /CSM/AH/AHE5-A/AHE519Q.Seq.d/                        791   0.0
AHD613 (AHD613Q) /CSM/AH/AHD6-A/AHD613Q.Seq.d/                        777   0.0
SHE158 (SHE158Q) /CSM/SH/SHE1-C/SHE158Q.Seq.d/                        773   0.0
AHC395 (AHC395Q) /CSM/AH/AHC3-D/AHC395Q.Seq.d/                        682   0.0
SFA582 (SFA582Q) /CSM/SF/SFA5-D/SFA582Q.Seq.d/                        676   0.0
SHL125 (SHL125Q) /CSM/SH/SHL1-B/SHL125Q.Seq.d/                        674   0.0
AHF829 (AHF829Q) /CSM/AH/AHF8-B/AHF829Q.Seq.d/                        670   0.0
AHA563 (AHA563Q) /CSM/AH/AHA5-C/AHA563Q.Seq.d/                        670   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE016967|AE016967.1 Mycoplasma gallisepticum strain R section 1 of 4 of the complete genome.    66   2e-06  1
DT603436|DT603436.1 she01-30ms3-g04 She01 Saruma henryi cDNA clone she01-30ms3-g04 5', mRNA sequence.    62   3e-05  1
DT579363|DT579363.1 she01-1ms2-d05 She01 Saruma henryi cDNA clone she01-1ms2-d05 5', mRNA sequence.    62   3e-05  1
DT602831|DT602831.1 she01-26ms3-e02 She01 Saruma henryi cDNA clone she01-26ms3-e02 5', mRNA sequence.    62   3e-05  1
AF465309|AF465309.1 Dictyostelium discoideum ABC transporter ABCA.7 (abca7) gene, complete cds.    58   3e-05  2
CO121916|CO121916.1 GR__Eb03E23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb03E23 5', mRNA sequence.    60   1e-04  1
CO115541|CO115541.1 GR__Eb017F11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb017F11 3', mRNA sequence.    60   1e-04  1
BB271873|BB271873.2 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830059M14, 3' end partial sequence.    60   1e-04  1
BB641856|BB641856.1 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830059M14, 5' end partial sequence.    60   1e-04  1
BE688495|BE688495.1 uw46c08.x1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone IMAGE:3465038 3', mRNA sequence.    60   1e-04  1
dna update 2005.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U07157_1(U07157|pid:none) Mus musculus ISRE-binding protein (IBF...    90   2e-16
(P35601) RecName: Full=Replication factor C subunit 1; AltName: ...    89   2e-16
A49393(A49393;A56200;A56284;JC4236) activator 1 large chain - mo...    89   2e-16
CP000498_145(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    87   1e-15
AL589883_12(AL589883|pid:none) Arabidopsis thaliana DNA chromoso...    87   1e-15
FJ154842_1(FJ154842|pid:none) Hydra magnipapillata replication f...    85   4e-15
BC051786_1(BC051786|pid:none) Homo sapiens replication factor C ...    85   5e-15
A49651(A49651) replication factor C large subunit - human  &L233...    85   5e-15
AM270007_6(AM270007|pid:none) Aspergillus niger contig An02c0120...    83   1e-14
AP007159_376(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    83   1e-14
protein update 2009. 4.11
PSORT 

 psg: 0.55  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.18  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for CHQ236 is nuc
5' end seq. ID CHQ236F
5' end seq. 
>CHQ236F.Seq
GTTTATAAATTTTTTTTTGTGTGTATTTATTTCTTTATTGAATTAAAAATAATACCACAC
AATGGCAAAAAAAGCAAATAAAGAACAATCACCAAAAAAAACTTCACCTACATCATCACA
AGGCTCGACTGCGACAAAGAAAAAAACGAAAACATCTGAACCAGCAGGAACTGATATTAG
AAATTTCTTTGCAGTAATTAAACCATCAACTAGTGGTGAAAATGTTAAAAATGATTTATT
TAGCAAAGCAAAAGAGGATAGTAATAAAGAATTTTCATTGTCAGACAAAGAAAATGATGA
TGTTAATATCATTAGCAACAAAAAAGATACAACTAACAATGATAAAAAGAAGCCATCAGA
AAATAAATCACCTAAAAAGAAAGAACCATCAAAATCTATTGATTTAACTTCTGATGAAGA
TAAAAGTTCAAGNNNNNNNNNN
Length of 5' end seq. 442
3' end seq. ID CHQ236Z
3' end seq. 
>CHQ236Z.Seq
NNNNNNNNNNACTACTCATATTTCTTTACCAACTCCAACTCCAACTCCAACTCCAACCCC
AGCATCATCATCATCATCATCAACTACTACTACTACTACTACTACTACTACTACTACAAA
TTCCACAGGAATAAAGGGACCATCATTACCAGTGAGATCTGGTAGTGGTGGAAGTTCAAC
AGGAATTAAAGGACCATCATTACCTGTGAGATCTGGTAGTGGTGGAACGACATCATCATC
ACCACCTTTAACTTTTACGTCATCACNTCCAACTTCAACAACCACCGCAACAACAACAAC
AACATCATCACCACCAATTAGTATGGCTTCGGTAATTGTGCCAAAATCAATTTCAACAAT
ACCAAAAGGACATGATATTTTATGGGTAGAAAAATATAGACCAAAAGTAATTGAAGATAT
AGTTGGTAATCCAGGTATTTTCCAAGAGTTTGGTAAATGGTTAGATCAATGGAACTCTAC
AGCACCAAGAGATGCAAGTAAAAAGAATGCAGTTTTATTATCAGGACCACCAGGTATTGG
TAAAACTTCAGCAGCTTTATTAATTTGTAAGCAAAAAGGCTTTGAAGCAATTGAATTGAA
TGCAAGTGATGCAAGAAGTAAATCAGAGATTAAAAGATTATTATCTGGTGTATCAGATAA
TCAAAACATTACCAAATTCTTGGTACAACCAATCAAGACACGGTAAAG
Length of 3' end seq. 708
Connected seq. ID CHQ236P
Connected seq. 
>CHQ236P.Seq
GTTTATAAATTTTTTTTTGTGTGTATTTATTTCTTTATTGAATTAAAAATAATACCACAC
AATGGCAAAAAAAGCAAATAAAGAACAATCACCAAAAAAAACTTCACCTACATCATCACA
AGGCTCGACTGCGACAAAGAAAAAAACGAAAACATCTGAACCAGCAGGAACTGATATTAG
AAATTTCTTTGCAGTAATTAAACCATCAACTAGTGGTGAAAATGTTAAAAATGATTTATT
TAGCAAAGCAAAAGAGGATAGTAATAAAGAATTTTCATTGTCAGACAAAGAAAATGATGA
TGTTAATATCATTAGCAACAAAAAAGATACAACTAACAATGATAAAAAGAAGCCATCAGA
AAATAAATCACCTAAAAAGAAAGAACCATCAAAATCTATTGATTTAACTTCTGATGAAGA
TAAAAGTTCAAG----------ACTACTCATATTTCTTTACCAACTCCAACTCCAACTCC
AACTCCAACCCCAGCATCATCATCATCATCATCAACTACTACTACTACTACTACTACTAC
TACTACTACAAATTCCACAGGAATAAAGGGACCATCATTACCAGTGAGATCTGGTAGTGG
TGGAAGTTCAACAGGAATTAAAGGACCATCATTACCTGTGAGATCTGGTAGTGGTGGAAC
GACATCATCATCACCACCTTTAACTTTTACGTCATCACNTCCAACTTCAACAACCACCGC
AACAACAACAACAACATCATCACCACCAATTAGTATGGCTTCGGTAATTGTGCCAAAATC
AATTTCAACAATACCAAAAGGACATGATATTTTATGGGTAGAAAAATATAGACCAAAAGT
AATTGAAGATATAGTTGGTAATCCAGGTATTTTCCAAGAGTTTGGTAAATGGTTAGATCA
ATGGAACTCTACAGCACCAAGAGATGCAAGTAAAAAGAATGCAGTTTTATTATCAGGACC
ACCAGGTATTGGTAAAACTTCAGCAGCTTTATTAATTTGTAAGCAAAAAGGCTTTGAAGC
AATTGAATTGAATGCAAGTGATGCAAGAAGTAAATCAGAGATTAAAAGATTATTATCTGG
TGTATCAGATAATCAAAACATTACCAAATTCTTGGTACAACCAATCAAGACACGGTAAAG
Length of connected seq. 1130
Full length Seq ID -
Full length Seq. -
Length of full length seq. -