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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ235
Library CH
(Link to library)
Clone ID CHQ235
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11840-1|Contig-U13129-1
Original site URL
Representative seq. ID CHQ235P
(Link to Original site)
Representative DNA sequence 
>CHQ235 (CHQ235Q) /CSM/CH/CHQ2-B/CHQ235Q.Seq.d/
AGGGATAGTAGGAACTTTACTATCGTTAGTTATCAGAATGGAATTATCAACAGGAAACAT
GTTAGATGGAGACGGTCAACAATATAACGTAATCGTAACCGCACATGGATTAATAATGAT
ATTCTTCGTGGTTATGCCGGCAATGTTAGGAGGATTTGCAAACTGGTTCATACCAATAAT
GGTAGGATCACCAGATGTAGCTTTTCCAAGATTAAACAACATTAGCTTATGGTTAATCAT
TGTATCATTTTTCTTATTACTTACATCATCATGTGTAGGAATAGGAGTAGGAACAGGTTG
GACAGTTTATCCACCATTAAGTACGATGGAATATCACCCTGGACATGCAGTAGACGTAGG
AATATTAAGTTTACATATAGCAGGAGCATCATCATTACTAGGAGCAATAAACTTTTTAAC
AACAGTATTTAATATGAAAATAGCAGGATTAAGTTGGTCAAAAGTATCATTATTTGTATG
GTCAATATTAATAACTGCAGTATTATTAGTATTATCTTTACCTGTATTAGXXXXXXXXXX
CATATTAGATTAATAATAACNTCAGGAGATGTTTTACATAGTTGGGCGATTCCATCATTT
GGAATAAAAGTAGATGCCGTACCAGGACGATTAAATCAAATTGGATTGTATGTAAAAAGA
GAAGGTACATTCTATGGACAATGTAGTGAATTATGTGGAGTAGATCATGGATTTATGCCA
ATTAAAGTTCAAGCTGTTAAATTAGGAGAGTATTTTTCAAACTAAATGAAAAATAACATC
AATAATAATAAAGTCNTAAAGGCAGCCGTCGACCCATTCCTATTACAGGCCTTTGGATTT
ACAGGATTGGGCGTAATGGGTGGCGTAATGGGTGTAATTATAGTTGTGGTTACATTCAAG
TATGCGCTGGCATCTTACGAGATCCACGTAAATGTAATACAAAAGGGAACACAAATGCTA
TTAGAGGCGACATTAGGACATGAGGTAGGAGTAAAGAGAGACGTATTTGAGAAAGTATTC
GAATTATTTAAAACGAGCCAATTAAGCNATGGGCAGCAGGTAACGGCATTAAAGGCTTTA
CTGAATAACATAATAGAATACAGAGACACTCATGCAATATCCGAATGGAAGGGAAAAAGC
TACA
sequence update 2002.10.25
Translated Amino Acid sequence 
GIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIM
VGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVG
ILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVL---

---HIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHG
FMPIKVQAVKLGEYFSN*mknninnnkvxkaavdpfllqafgftglgvmggvmgviivvv
tfkyalasyeihvnviqkgtqmlleatlghevgvkrdvfekvfelfktsqlsxgqqvtal
kallnniieyrdthaisewkgksy
Translated Amino Acid sequence (All Frames) 
Frame A:
rdsrnftivsyqngiinrkhvrwrrsti*rnrnrtwinndilrgyagnvrricklvhtnn
gritrcsfskikqh*lmvnhciiflityiimcrnrsrnrldslstikydgispwtcsrrr
nikftysrsiiitrsnklfnnsi*yensriklvksiiicmvninncsiisiiftci---

---HIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHG
FMPIKVQAVKLGEYFSN*mknninnnkvxkaavdpfllqafgftglgvmggvmgviivvv
tfkyalasyeihvnviqkgtqmlleatlghevgvkrdvfekvfelfktsqlsxgqqvtal
kallnniieyrdthaisewkgksy

Frame B:
GIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIM
VGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVG
ILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVL---

---ild***xqemfyivgrfhhle*k*mpyqdd*ikldcm*kekvhsmdnvvnyve*imd
lcqlkfklln*esifqtk*kitsiiiks*rqpsthsyyrpldlqdwa*wva*wv*l*lwl
hssmrwhltrst*m*ykrehkcy*rrh*dmr*e*retylrkysnylkran*amgsr*rh*
rly*it**ntetlmqypngrekat

Frame C:
g**elyyr*lsewnyqqetc*metvnnit*s*phmd***ysswlcrqc*edlqtgsyq*w
*dhqm*lfqd*ttlayg*slyhfsyylhhhv*e*e*eqvgqfihh*vrwnitldmq*t*e
y*vyi*qehhhy*eq*tf*qqyli*k*qd*vgqkyhylygqy**lqyy*yylyly*---

---y*innnxrrcft*lgdsiiwnksrcrtrtiksnwivckkrryilwtm**imwsrswi
yan*sssc*irrvffklnek*hq***sxkgsrrpipitglwiyrigrngwrngcnyscgy
iqvcagilrdprkcntkgntnairgdirt*grskerri*esirii*nepikxwaagngik
gfte*hnriqrhscnirmegkkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ235 (CHQ235Q) /CSM/CH/CHQ2-B/CHQ235Q.Seq.d/                       2190   0.0
VHB379 (VHB379Q) /CSM/VH/VHB3-D/VHB379Q.Seq.d/                       1144   0.0
VFN289 (VFN289Q) /CSM/VF/VFN2-D/VFN289Q.Seq.d/                       1136   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1128   0.0
VHD502 (VHD502Q) /CSM/VH/VHD5-A/VHD502Q.Seq.d/                       1063   0.0
SHH491 (SHH491Q) /CSM/SH/SHH4-D/SHH491Q.Seq.d/                       1043   0.0
VSG457 (VSG457Q) /CSM/VS/VSG4-C/VSG457Q.Seq.d/                        894   0.0
VHF682 (VHF682Q) /CSM/VH/VHF6-D/VHF682Q.Seq.d/                        882   0.0
VSG767 (VSG767Q) /CSM/VS/VSG7-C/VSG767Q.Seq.d/                        676   0.0
AFD890 (AFD890Q) /CSM/AF/AFD8-D/AFD890Q.Seq.d/                        402   e-111
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D50297|D50297.1 Dictyostelium discoideum mitochondrial DNA for cytochrome oxidase subunit 1 and subunit 2, ai4, ai3, ai2b, ai2a,complete cds.   789   0.0    4
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   789   0.0    6
U87391|U87391.1 Dictyostelium discoideum cytochrome c oxidase 1 (Ddmco) mRNA, mitochondrial gene encoding mitochondrial protein, partial cds.   593   0.0    2
X81884|X81884.1 D.discoideum mitochondrial cox1 gene and cox2 gene.   432   e-135  2
AY700145|AY700145.1 Polysphondylium pallidum mitochondrion DNA, complete sequence.   149   2e-93  11
AF288090|AF288090.1 Rhodomonas salina mitochondrial DNA, complete genome.    88   8e-16  2
AY369367|AY369367.1 Phytophthora syringae strain 469 cytochrome c oxidase subunit II gene, partial cds; mitochondrial.    74   1e-14  2
AF007261|AF007261.1 Reclinomonas americana mitochondrial DNA, complete genome.    70   2e-14  4
AY611801|AY611801.1 Stegodyphus lineatus strain A2b cytochrome oxidase subunit I (CO1) gene, partial cds; mitochondrial.    70   2e-14  2
AY611800|AY611800.1 Stegodyphus lineatus strain A2a cytochrome oxidase subunit I (CO1) gene, partial cds; mitochondrial.    70   2e-14  2
dna update 2005.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O21042) RecName: Full=Cytochrome c oxidase subunit 1+2;        ...   333   6e-90
DQ336395_6(DQ336395|pid:none) Dictyostelium citrinum mitochondri...   312   2e-83
EU275726_6(EU275726|pid:none) Polysphondylium pallidum strain PN...   285   3e-75
AY700145_35(AY700145|pid:none) Polysphondylium pallidum mitochon...   284   3e-75
EU275727_7(EU275727|pid:none) Dictyostelium fasciculatum strain ...   280   6e-74
U87391_1(U87391|pid:none) Dictyostelium discoideum cytochrome c ...   235   2e-60
(Q37370) RecName: Full=Cytochrome c oxidase subunit 1+2;        ...   229   2e-58
DQ662399_2(DQ662399|pid:none) Ceriantheopsis americana NADH dehy...   226   8e-58
AB009419_1(AB009419|pid:none) Cryptomonas ovata mitochondrial CO...   224   3e-57
AF110138_23(AF110138|pid:none) Nephroselmis olivacea mitochondri...   224   5e-57
protein update 2009. 4.11
PSORT 

 psg: 0.93  gvh: 0.55  alm: 0.18  top: 0.63  tms: 0.27  mit: 0.19  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 16.0 %: endoplasmic reticulum
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHQ235 is pla
5' end seq. ID CHQ235F
5' end seq. 
>CHQ235F.Seq
AGGGATAGTAGGAACTTTACTATCGTTAGTTATCAGAATGGAATTATCAACAGGAAACAT
GTTAGATGGAGACGGTCAACAATATAACGTAATCGTAACCGCACATGGATTAATAATGAT
ATTCTTCGTGGTTATGCCGGCAATGTTAGGAGGATTTGCAAACTGGTTCATACCAATAAT
GGTAGGATCACCAGATGTAGCTTTTCCAAGATTAAACAACATTAGCTTATGGTTAATCAT
TGTATCATTTTTCTTATTACTTACATCATCATGTGTAGGAATAGGAGTAGGAACAGGTTG
GACAGTTTATCCACCATTAAGTACGATGGAATATCACCCTGGACATGCAGTAGACGTAGG
AATATTAAGTTTACATATAGCAGGAGCATCATCATTACTAGGAGCAATAAACTTTTTAAC
AACAGTATTTAATATGAAAATAGCAGGATTAAGTTGGTCAAAAGTATCATTATTTGTATG
GTCAATATTAATAACTGCAGTATTATTAGTATTATCTTTACCTGTATTAGNNNNNNNNNN
Length of 5' end seq. 540
3' end seq. ID CHQ235Z
3' end seq. 
>CHQ235Z.Seq
NNNNNNNNNNCATATTAGATTAATAATAACNTCAGGAGATGTTTTACATAGTTGGGCGAT
TCCATCATTTGGAATAAAAGTAGATGCCGTACCAGGACGATTAAATCAAATTGGATTGTA
TGTAAAAAGAGAAGGTACATTCTATGGACAATGTAGTGAATTATGTGGAGTAGATCATGG
ATTTATGCCAATTAAAGTTCAAGCTGTTAAATTAGGAGAGTATTTTTCAAACTAAATGAA
AAATAACATCAATAATAATAAAGTCNTAAAGGCAGCCGTCGACCCATTCCTATTACAGGC
CTTTGGATTTACAGGATTGGGCGTAATGGGTGGCGTAATGGGTGTAATTATAGTTGTGGT
TACATTCAAGTATGCGCTGGCATCTTACGAGATCCACGTAAATGTAATACAAAAGGGAAC
ACAAATGCTATTAGAGGCGACATTAGGACATGAGGTAGGAGTAAAGAGAGACGTATTTGA
GAAAGTATTCGAATTATTTAAAACGAGCCAATTAAGCNATGGGCAGCAGGTAACGGCATT
AAAGGCTTTACTGAATAACATAATAGAATACAGAGACACTCATGCAATATCCGAATGGAA
GGGAAAAAGCTACA
Length of 3' end seq. 614
Connected seq. ID CHQ235P
Connected seq. 
>CHQ235P.Seq
AGGGATAGTAGGAACTTTACTATCGTTAGTTATCAGAATGGAATTATCAACAGGAAACAT
GTTAGATGGAGACGGTCAACAATATAACGTAATCGTAACCGCACATGGATTAATAATGAT
ATTCTTCGTGGTTATGCCGGCAATGTTAGGAGGATTTGCAAACTGGTTCATACCAATAAT
GGTAGGATCACCAGATGTAGCTTTTCCAAGATTAAACAACATTAGCTTATGGTTAATCAT
TGTATCATTTTTCTTATTACTTACATCATCATGTGTAGGAATAGGAGTAGGAACAGGTTG
GACAGTTTATCCACCATTAAGTACGATGGAATATCACCCTGGACATGCAGTAGACGTAGG
AATATTAAGTTTACATATAGCAGGAGCATCATCATTACTAGGAGCAATAAACTTTTTAAC
AACAGTATTTAATATGAAAATAGCAGGATTAAGTTGGTCAAAAGTATCATTATTTGTATG
GTCAATATTAATAACTGCAGTATTATTAGTATTATCTTTACCTGTATTAG----------
CATATTAGATTAATAATAACNTCAGGAGATGTTTTACATAGTTGGGCGATTCCATCATTT
GGAATAAAAGTAGATGCCGTACCAGGACGATTAAATCAAATTGGATTGTATGTAAAAAGA
GAAGGTACATTCTATGGACAATGTAGTGAATTATGTGGAGTAGATCATGGATTTATGCCA
ATTAAAGTTCAAGCTGTTAAATTAGGAGAGTATTTTTCAAACTAAATGAAAAATAACATC
AATAATAATAAAGTCNTAAAGGCAGCCGTCGACCCATTCCTATTACAGGCCTTTGGATTT
ACAGGATTGGGCGTAATGGGTGGCGTAATGGGTGTAATTATAGTTGTGGTTACATTCAAG
TATGCGCTGGCATCTTACGAGATCCACGTAAATGTAATACAAAAGGGAACACAAATGCTA
TTAGAGGCGACATTAGGACATGAGGTAGGAGTAAAGAGAGACGTATTTGAGAAAGTATTC
GAATTATTTAAAACGAGCCAATTAAGCNATGGGCAGCAGGTAACGGCATTAAAGGCTTTA
CTGAATAACATAATAGAATACAGAGACACTCATGCAATATCCGAATGGAAGGGAAAAAGC
TACA
Length of connected seq. 1134
Full length Seq ID -
Full length Seq. -
Length of full length seq. -