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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ230
Library CH
(Link to library)
Clone ID CHQ230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16248-1
Original site URL
Representative seq. ID CHQ230P
(Link to Original site)
Representative DNA sequence 
>CHQ230 (CHQ230Q) /CSM/CH/CHQ2-B/CHQ230Q.Seq.d/
ACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAA
AAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATG
GAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCT
GATGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGC
AGTTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTC
GTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAA
GATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAAT
GTTTATGTTGCCGACGCTTCXXXXXXXXXXAAACCAACCAAAGGTAAATAAATAATAAAT
TAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAAGATTTCACTGTTGATGAAA
ATAAATTCAGAGTTGCACCAAGCAATGAAACNTTAATGGAAACTGTCAAGAATTTAGAAG
CCAAGAACCACAGGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTA
AATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATC
GGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATT
TTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATAC
TTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAGATGTTTATGTTGCCGACGCTTC
AGGTACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAA
CAAGATTGTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATG
TGAAAGTGTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAAGGATTCAAAATCTTTT
GGGTATGAAACATGGTGCTCCAAACAAACATCACATTATCCTCATTAAAAAATTATTAGG
TTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
tkvnk**IKMLTFKQLKETEKDFTVDENKFRVAPSNETLMETVKNLEAKNHRVSVVENEA
DALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADKQADARK
DALTSQYFLSSVTAISKTGNVYVADA---

---NQPKVNK**ikmltfkqlketekrfhc**k*iqsctkq*nxngncqefrsqepqefq
slkmklml*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlin
klmlvkml*phntfyhl*lqspkledvyvadasgtrvggftaaknliivsgynkivdsde
lavqrteqfclpcesvrarwaykvpgsriqnllgmkhgapnkhhiilikkllgy
Translated Amino Acid sequence (All Frames) 
Frame A:
tkvnk**IKMLTFKQLKETEKDFTVDENKFRVAPSNETLMETVKNLEAKNHRVSVVENEA
DALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADKQADARK
DALTSQYFLSSVTAISKTGNVYVADA---

---kptkgk*iin*dvniqtikrnrkkisllmkinselhqamkx*wklsri*kprttgvs
vveneadalnlllneipkgsevmcassctideigfkkiyfsddspfvnvhkkilalpadk
qadarkdaltsqyflssvtaisktgrclccrrfryqswrfhcc*kfnhrfwl*qdc*f**
isrpkn*tilftm*kcscslglqssrfkdsksfgyetwcskqtshyph*kiirl

Frame B:
qr*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*kprttefqslkmkl
ml*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklmlvk
ml*phntfyhl*lqspklemfmlptl---

---NQPKVNK**ikmltfkqlketekrfhc**k*iqsctkq*nxngncqefrsqepqefq
slkmklml*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlin
klmlvkml*phntfyhl*lqspkledvyvadasgtrvggftaaknliivsgynkivdsde
lavqrteqfclpcesvrarwaykvpgsriqnllgmkhgapnkhhiilikkllgy

Frame C:
kgk*iin*dvniqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfsr*k*s*
cfkfiik*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts*cs*r
cfnltilfiicncnlqnwkclccrrf---

---tnqr*innklrc*hsnn*kkpkkdftvdenkfrvapsnetlmetvknleaknhrsfs
r*k*s*cfkfiik*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**t
s*cs*rcfnltilfiicncnlqnwkmfmlptlqvpelavslllki*ssflvitrllilmn
*pskelnnsvyhvkvfvlvgltkfqvqgfkifwv*nmvlqtnitlsslkny*v
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ230 (CHQ230Q) /CSM/CH/CHQ2-B/CHQ230Q.Seq.d/                       2202   0.0
VFE226 (VFE226Q) /CSM/VF/VFE2-B/VFE226Q.Seq.d/                       1285   0.0
SHF652 (SHF652Q) /CSM/SH/SHF6-C/SHF652Q.Seq.d/                       1281   0.0
CHG794 (CHG794Q) /CSM/CH/CHG7-D/CHG794Q.Seq.d/                       1275   0.0
CHM787 (CHM787Q) /CSM/CH/CHM7-D/CHM787Q.Seq.d/                       1273   0.0
SHD839 (SHD839Q) /CSM/SH/SHD8-B/SHD839Q.Seq.d/                       1269   0.0
SHI307 (SHI307Q) /CSM/SH/SHI3-A/SHI307Q.Seq.d/                       1263   0.0
VSJ656 (VSJ656Q) /CSM/VS/VSJ6-C/VSJ656Q.Seq.d/                       1261   0.0
SHK631 (SHK631Q) /CSM/SH/SHK6-B/SHK631Q.Seq.d/                       1261   0.0
CHL558 (CHL558Q) /CSM/CH/CHL5-C/CHL558Q.Seq.d/                       1261   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   686   0.0    5
AJ310674|AJ310674.1 Dictyostelium discoideum 3B gene for prespore-specific protein 3B,.   686   0.0    2
AJ838024|AJ838024.1 Arabidopsis thaliana T-DNA flanking sequence, left border, clone  333C12.    40   7e-04  2
AR723874|AR723874.1 Sequence 51 from patent US 6951923.            38   0.027  2
BD269370|BD269370.1 Gene showing enhanced expression in association with aging of cells and final differentiation of cells and utilization thereof.    38   0.027  2
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   0.056  10
CG965154|CG965154.1 MBEBC61TFB mth2 Medicago truncatula genomic clone 17L1, genomic survey sequence.    40   0.059  3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   0.072  12
DU263853|DU263853.1 1098574266233 CHORI-243 Ovis aries genomic clone CH243-477O6, genomic survey sequence.    38   0.083  2
BV269071|BV269071.1 S235P6495FH1.T0 ItalianGreyhound Canis familiaris STS genomic, sequence tagged site.    34   0.11   3
dna update 2005.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115605_5(AC115605|pid:none) Dictyostelium discoideum chromosom...   119   9e-39
AC115605_4(AC115605|pid:none) Dictyostelium discoideum chromosom...   110   3e-38
AY596296_161(AY596296|pid:none) Haloarcula marismortui ATCC 4304...    69   2e-16
AM412317_887(AM412317|pid:none) Clostridium botulinum A str. ATC...    43   5e-05
AE015927_490(AE015927|pid:none) Clostridium tetani E88, complete...    42   1e-04
CP001197_25(CP001197|pid:none) Desulfovibrio vulgaris str. 'Miya...    38   0.011
CP000312_2508(CP000312|pid:none) Clostridium perfringens SM101, ...    44   0.013
BA000016_2602(BA000016|pid:none) Clostridium perfringens str. 13...    44   0.013
CP000246_2818(CP000246|pid:none) Clostridium perfringens ATCC 13...    44   0.013
CP001393_2285(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    39   0.030
protein update 2009. 4.11
PSORT 

 psg: 0.48  gvh: 0.23  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHQ230 is cyt
5' end seq. ID CHQ230F
5' end seq. 
>CHQ230F.Seq
ACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAA
AAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATG
GAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCT
GATGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGC
AGTTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTC
GTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAA
GATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAAT
GTTTATGTTGCCGACGCTTCNNNNNNNNNN
Length of 5' end seq. 450
3' end seq. ID CHQ230Z
3' end seq. 
>CHQ230Z.Seq
NNNNNNNNNNAAACCAACCAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAAC
AATTAAAAGAAACCGAAAAAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCA
AGCAATGAAACNTTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGGAGTTTC
AGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTC
TGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTT
CAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAA
ACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGC
AATCTCCAAAACTGGAAGATGTTTATGTTGCCGACGCTTCAGGTACCAGAGTTGGCGGTT
TCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGATTCTGATG
AATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAAAGTGTTCGTGCTCGTT
GGGCTTACAAAGTTCCAGGTTCAAGGATTCAAAATCTTTTGGGTATGAAACATGGTGCTC
CAAACAAACATCACATTATCCTCATTAAAAAATTATTAGGTTAT
Length of 3' end seq. 704
Connected seq. ID CHQ230P
Connected seq. 
>CHQ230P.Seq
ACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAA
AAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATG
GAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCT
GATGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGC
AGTTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTC
GTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAA
GATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAAT
GTTTATGTTGCCGACGCTTC----------AAACCAACCAAAGGTAAATAAATAATAAAT
TAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAAGATTTCACTGTTGATGAAA
ATAAATTCAGAGTTGCACCAAGCAATGAAACNTTAATGGAAACTGTCAAGAATTTAGAAG
CCAAGAACCACAGGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTA
AATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATC
GGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATT
TTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATAC
TTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAGATGTTTATGTTGCCGACGCTTC
AGGTACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAA
CAAGATTGTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATG
TGAAAGTGTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAAGGATTCAAAATCTTTT
GGGTATGAAACATGGTGCTCCAAACAAACATCACATTATCCTCATTAAAAAATTATTAGG
TTAT
Length of connected seq. 1134
Full length Seq ID -
Full length Seq. -
Length of full length seq. -