NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ217
Library CH
(Link to library)
Clone ID CHQ217
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID CHQ217P
(Link to Original site)
Representative DNA sequence 
>CHQ217 (CHQ217Q) /CSM/CH/CHQ2-A/CHQ217Q.Seq.d/
ACATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGTGTCT
TCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATATGCCA
ACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGTATCG
GTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACCAACT
TTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCTACG
GTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCTCAA
TGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAACTG
ATTGGTTAGXXXXXXXXXXAAAACCAAAACATAAAATAATTAAAAATGACAACTGTTAAA
CCAACNTCCCCAGAAAACCCACGTGTCTTCTTTGATATCACCATCGGTGGTGTTGAAGCC
GGTAAAGTAGTTATGGAATTATATGCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGA
GCTTTATGTACTGGTGAAAAAGGTATCGGTAAATCAGGCAAACCATTATCATACAAAGGA
TCATCTTTCCATCGTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGT
AATGGTACTGGTGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTA
AAACATTTCGGTCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCA
CAATTCTTTATCTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGT
TTTGTCACTGAAGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGT
AAAACTACCAAACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAG
CTTTTTTATAATAATTAATAAGAATAAAAAGAATNATTCAATTTTTTTTTG
sequence update 2002.10.25
Translated Amino Acid sequence 
ik*LKMTTVKPTSPENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIG
KSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSM
ANAGANTNGSQFFICVAPTDWL---

---KPKHKIIKNDNC*tnxprkptcll*yhhrwc*sr*ssygiicqhcpkdc*klqsfmy
w*kryr*irqtiiiqriifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfr
srytlngqrwcqhqwftilylccsn*lvrr*trcirfch*rygcr*kdgscwftir*nyq
tsrhcqlwstlnyqhiafl**lirikrxiqfff
Translated Amino Acid sequence (All Frames) 
Frame A:
t*nn*k*qllnqppqkthvsslispsvvlkpvk*lwnymptlsqrllktselyvlvkkvs
vnqanhyhtkdhlsivlsptlcvkvvtlpwvmvlvvnqstvtnllmktsn*nisvkvhsq
wptlvptpmvhnslsvllqlig*---

---ktkt*nn*k*qllnqxpqkthvsslispsvvlkpvk*lwnymptlsqrllktselyv
lvkkvsvnqanhyhtkdhlsivlsptlcvkvvtlpwvmvlvvnqstvtnllmktsn*nis
vkvhsqwptlvptpmvhnslsvllqlig*tvntlysvlslkvwmslkrwkllvhnqvklp
nqsslptvvnfklstysffiiinknkknxsiff

Frame B:
hkiikndnc*tnlprkptcll*yhhrwc*sr*ssygiicqhcpkdc*klqsfmyw*kryr
*irqtiiiqriifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfrsrytln
gqrwcqhqwftilylccsn*lv---

---KPKHKIIKNDNC*tnxprkptcll*yhhrwc*sr*ssygiicqhcpkdc*klqsfmy
w*kryr*irqtiiiqriifpscyhqlyvsrw*lyhg*wyww*inlr*qic**klqiktfr
srytlngqrwcqhqwftilylccsn*lvrr*trcirfch*rygcr*kdgscwftir*nyq
tsrhcqlwstlnyqhiafl**lirikrxiqfff

Frame C:
ik*LKMTTVKPTSPENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIG
KSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSM
ANAGANTNGSQFFICVAPTDWL---

---nqnik*lkmttvkptspenprvffditiggveagkvvmelyantvpktaenfralct
gekgigksgkplsykgssfhrvitnfmcqggdftmgngtggesiygnkfadenfklkhfg
qgtlsmanagantngsqfficvaptdwldgkhvvfgfvtegmdvvkkmeaagsqsgkttk
pvviancgql*iini*lfynn**e*kexfnffl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ217 (CHQ217Q) /CSM/CH/CHQ2-A/CHQ217Q.Seq.d/                       2032   0.0
VSD755 (VSD755Q) /CSM/VS/VSD7-C/VSD755Q.Seq.d/                       1207   0.0
VHF401 (VHF401Q) /CSM/VH/VHF4-A/VHF401Q.Seq.d/                       1203   0.0
CHN256 (CHN256Q) /CSM/CH/CHN2-C/CHN256Q.Seq.d/                       1197   0.0
VHG230 (VHG230Q) /CSM/VH/VHG2-B/VHG230Q.Seq.d/                       1193   0.0
SSK338 (SSK338Q) /CSM/SS/SSK3-B/SSK338Q.Seq.d/                       1193   0.0
SSK846 (SSK846Q) /CSM/SS/SSK8-B/SSK846Q.Seq.d/                       1179   0.0
CHM129 (CHM129Q) /CSM/CH/CHM1-B/CHM129Q.Seq.d/                       1178   0.0
SLK488 (SLK488Q) /CSM/SL/SLK4-D/SLK488Q.Seq.d/                       1176   0.0
SSD343 (SSD343Q) /CSM/SS/SSD3-B/SSD343Q.Seq.d/                       1174   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M60628|M60628.1 C.albicans peptidyl-propyl cis-trans isomerase (CYP1) gene, complete cds.    88   8e-36  5
AX536868|AX536868.1 Sequence 469 from Patent WO02064766.           88   2e-34  4
AF123597|AF123597.1 Dictyostelium discoideum cyclophilin B (cypB) mRNA, complete cds.    74   3e-32  4
AF053068|AF053068.1 Dictyostelium discoideum cyclophilin B (CypB) gene, complete cds.    58   1e-27  5
CN589994|CN589994.1 TTE00000841 Non-normalized Tetrahymena thermophila cDNA, mRNA sequence.    84   1e-26  3
BM394528|BM394528.1 50072-2-4-E03.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    84   3e-26  3
BM393022|BM393022.1 50071-2-4-E03.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence.    84   3e-26  3
CX576109|CX576109.1 TTE00021479 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    84   3e-26  3
CX589358|CX589358.1 TTE00020153 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    84   3e-26  3
BM393790|BM393790.1 50072-2-11-B04.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    84   3e-26  3
dna update 2005.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47812_1(U47812|pid:none) Onchocerca volvulus cyclophilin Ovcyp-...   255   2e-66
EU401723_1(EU401723|pid:none) Capsicum annuum cyclophilin mRNA, ...   253   1e-65
EU126917_1(EU126917|pid:none) Gerbera hybrid cultivar cyclophili...   252   2e-65
EU284859_1(EU284859|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   251   4e-65
AF020434_1(AF020434|pid:none) Arabidopsis thaliana cyclophilin (...   250   5e-65
AF126551_1(AF126551|pid:none) Solanum tuberosum subsp. tuberosum...   250   6e-65
EF144376_1(EF144376|pid:none) Populus trichocarpa clone PX0019_B...   250   6e-65
FB823121_1(FB823121|pid:none) Sequence 42394 from Patent WO20080...   250   6e-65
EF122402_1(EF122402|pid:none) Citrus cv. Shiranuhi putative cycl...   250   6e-65
CSTO(A39252)peptidylprolyl isomerase (EC 5.2.1.8) - tomato            249   8e-65
protein update 2009. 4.11
PSORT 

 psg: 0.50  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for CHQ217 is cyt
5' end seq. ID CHQ217F
5' end seq. 
>CHQ217F.Seq
ACATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGTGTCT
TCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATATGCCA
ACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGTATCG
GTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACCAACT
TTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCTACG
GTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCTCAA
TGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAACTG
ATTGGTTAGNNNNNNNNNN
Length of 5' end seq. 439
3' end seq. ID CHQ217Z
3' end seq. 
>CHQ217Z.Seq
NNNNNNNNNNAAAACCAAAACATAAAATAATTAAAAATGACAACTGTTAAACCAACNTCC
CCAGAAAACCCACGTGTCTTCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTA
GTTATGGAATTATATGCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGT
ACTGGTGAAAAAGGTATCGGTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTC
CATCGTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACT
GGTGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTC
GGTCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTT
ATCTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGTTTTGTCACT
GAAGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGTAAAACTACC
AAACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAGCTTTTTTAT
AATAATTAATAAGAATAAAAAGAATNATTCAATTTTTTTTTG
Length of 3' end seq. 642
Connected seq. ID CHQ217P
Connected seq. 
>CHQ217P.Seq
ACATAAAATAATTAAAAATGACAACTGTTAAACCAACCTCCCCAGAAAACCCACGTGTCT
TCTTTGATATCACCATCGGTGGTGTTGAAGCCGGTAAAGTAGTTATGGAATTATATGCCA
ACACTGTCCCAAAGACTGCTGAAAACTTCAGAGCTTTATGTACTGGTGAAAAAGGTATCG
GTAAATCAGGCAAACCATTATCATACAAAGGATCATCTTTCCATCGTGTTATCACCAACT
TTATGTGTCAAGGTGGTGACTTTACCATGGGTAATGGTACTGGTGGTGAATCAATCTACG
GTAACAAATTTGCTGATGAAAACTTCAAATTAAAACATTTCGGTCAAGGTACACTCTCAA
TGGCCAACGCTGGTGCCAACACCAATGGTTCACAATTCTTTATCTGTGTTGCTCCAACTG
ATTGGTTAG----------AAAACCAAAACATAAAATAATTAAAAATGACAACTGTTAAA
CCAACNTCCCCAGAAAACCCACGTGTCTTCTTTGATATCACCATCGGTGGTGTTGAAGCC
GGTAAAGTAGTTATGGAATTATATGCCAACACTGTCCCAAAGACTGCTGAAAACTTCAGA
GCTTTATGTACTGGTGAAAAAGGTATCGGTAAATCAGGCAAACCATTATCATACAAAGGA
TCATCTTTCCATCGTGTTATCACCAACTTTATGTGTCAAGGTGGTGACTTTACCATGGGT
AATGGTACTGGTGGTGAATCAATCTACGGTAACAAATTTGCTGATGAAAACTTCAAATTA
AAACATTTCGGTCAAGGTACACTCTCAATGGCCAACGCTGGTGCCAACACCAATGGTTCA
CAATTCTTTATCTGTGTTGCTCCAACTGATTGGTTAGACGGTAAACACGTTGTATTCGGT
TTTGTCACTGAAGGTATGGATGTCGTTAAAAAGATGGAAGCTGCTGGTTCACAATCAGGT
AAAACTACCAAACCAGTCGTCATTGCCAACTGTGGTCAACTTTAAATTATCAACATATAG
CTTTTTTATAATAATTAATAAGAATAAAAAGAATNATTCAATTTTTTTTTG
Length of connected seq. 1061
Full length Seq ID -
Full length Seq. -
Length of full length seq. -