>CHQ211 (CHQ211Q) /CSM/CH/CHQ2-A/CHQ211Q.Seq.d/
AATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAACG
TATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGATGA
AGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGG
AAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTAAC
TCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACCTA
TGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGA
TAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATTAA
ACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGG
TTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACC
AACACCTCCACCXXXXXXXXXXCTTTGATAATCATAAAACAGGTCTTCATGACTATACCA
ATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACT
ATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAG
GTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAAC
AAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTG
GTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTT
CAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTAT
CCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAA
TTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTC
ATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTT
TTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAA
AAAAATAAAATAATAAAAAAATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAAT
AAATAAAAATATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATAT

ISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKG
NKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSAD
NLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPP
TPP---

---FDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLY
ITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITV
FLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTN
SDAFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nnkki*inkkikk*ikk*iki*
ink*ink*ink*iki

Frame A:
nikynfkycikyfitsi*styfgikrkmlfrfk*kciv**r*triwkc*nffrkcn*l*g
k*isntlfic*wyiyi*winstynl*iyiyqskrlll*nl*kdiglstrctmyssngfs*
*fgsrsfsckylcl*hsid*tswcfirliytys*n*c*fglc*ansttnsttysttystt
ntst---

---l**s*nrss*lyqcfwcn*rws*yycynwfrll*si*rfnslv*cnlw*ttkrllfi
ynlfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twyfrnhs
ilnlwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*snsskyk
**cflinc**clchffyff*cwwllf*wlfiwyyskkik**knink*knkkinkkinkni
nk*ink*ink*inkn

Frame B:
ISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKG
NKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSAD
NLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPP
TPP---

---FDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLY
ITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITV
FLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTN
SDAFLSTVDNVYVTSFTSSDAGGYYFNGCSFGIIPKK*nnkki*inkkikk*ikk*iki*
ink*ink*ink*iki

Frame C:
yqv*f*ily*ifhhkyminvfwh*kenvi*iqikmhcmmkvnqdlemlkfl*emqliire
iniqyvihllmvhlymmd*lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqli
iwqqif*lqiplpitfh*lnklvfhqahlylqlelvliwvmlsklnhqlnhllnhllnhq
hlh---

---liiikqvfmtipmllvqlkvvvilllqlvsitmkhlkvqfvgimqplvnn*kvtlyi
*plqmvvphlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlvfqesqy
s*smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliqliqiqi
vmlsyqllimfmsllllllmlvviilmvvhlvlfqknkiikkyk*ikk*knk*knk*kyk
*ink*ink*ink*ky

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                       1261   0.0
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/                       1261   0.0
SHL852 (SHL852Q) /CSM/SH/SHL8-C/SHL852Q.Seq.d/                       1261   0.0
SHL833 (SHL833Q) /CSM/SH/SHL8-B/SHL833Q.Seq.d/                       1261   0.0
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/                       1261   0.0
SHL804 (SHL804Q) /CSM/SH/SHL8-A/SHL804Q.Seq.d/                       1261   0.0
SHL785 (SHL785Q) /CSM/SH/SHL7-D/SHL785Q.Seq.d/                       1261   0.0
SHL727 (SHL727Q) /CSM/SH/SHL7-B/SHL727Q.Seq.d/                       1261   0.0
SHL696 (SHL696Q) /CSM/SH/SHL6-D/SHL696Q.Seq.d/                       1261   0.0
SHL664 (SHL664Q) /CSM/SH/SHL6-C/SHL664Q.Seq.d/                       1261   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.47   1
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    36   0.94   2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    36   0.96   2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   0.96   2
CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNA sequence.    46   1.9    1
BB047825|BB047825.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430562L22, 3' end partial sequence.    46   1.9    1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    46   1.9    1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   1.9    1
BH078802|BH078802.1 RPCI-24-244F17.TV RPCI-24 Mus musculus genomic clone RPCI-24-244F17 , DNA sequence.    46   1.9    1
AC148334|AC148334.3 Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence.    46   1.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   2e-08
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    61   7e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    59   4e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   4e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   3e-05

 psg: 0.87  gvh: 0.46  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHQ211 is mit

>CHQ211F.Seq
AATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAACG
TATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGATGA
AGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGG
AAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTAAC
TCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACCTA
TGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGA
TAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATTAA
ACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGG
TTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACC
AACACCTCCACCNNNNNNNNNN

>CHQ211Z.Seq
NNNNNNNNNNCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTG
CAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTG
AAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTAT
ATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTG
GTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGC
TTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAG
TATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATG
GTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCAT
TCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAA
ATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTG
ATGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAAAAAAATAAAATA
ATAAAAAAATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAATAAATAAAAATAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATAT

>CHQ211P.Seq
AATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAACG
TATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGATGA
AGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGG
AAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTAAC
TCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACCTA
TGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGA
TAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATTAA
ACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGG
TTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACC
AACACCTCCACC----------CTTTGATAATCATAAAACAGGTCTTCATGACTATACCA
ATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACT
ATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAG
GTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAAC
AAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTG
GTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTT
CAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTAT
CCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAA
TTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTC
ATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTT
TTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTTGGTATTATTCCAA
AAAAATAAAATAATAAAAAAATATAAATAAATAAAAAAATAAAAAAATAAATAAAAAAAT
AAATAAAAATATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAATAT